Wall clock time and date at job start Wed Apr 1 2020 02:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.53001 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47084 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47084 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99963 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99944 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99872 * 179.97438 * 13 11 10 15 15 H 1.08999 * 110.88630 * 34.30339 * 14 13 11 16 16 C 1.54901 * 111.00639 * 270.42027 * 14 13 11 17 17 N 1.47467 * 104.81142 * 204.95068 * 16 14 13 18 18 C 1.36940 * 125.62901 * 204.04743 * 17 16 14 19 19 H 1.07997 * 120.00020 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99915 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00404 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99971 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47294 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47229 * 120.00237 * 22 20 18 25 25 H 1.48501 * 109.47621 * 240.00359 * 22 20 18 26 26 C 1.47020 * 108.72239 * 24.07076 * 17 16 14 27 27 C 1.54325 * 107.27239 * 358.97539 * 26 17 16 28 28 H 1.09005 * 110.71815 * 96.16785 * 27 26 17 29 29 O 1.42893 * 110.71759 * 219.44473 * 27 26 17 30 30 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 31 31 H 1.09000 * 109.47330 * 59.99777 * 1 2 3 32 32 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46621 * 60.00032 * 3 2 1 34 34 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 35 35 H 1.09001 * 109.46652 * 60.00333 * 4 3 2 36 36 H 1.08992 * 109.47514 * 300.00423 * 4 3 2 37 37 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 38 38 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 39 39 H 0.97000 * 120.00420 * 0.02562 * 6 5 4 40 40 H 1.09002 * 109.47152 * 300.00160 * 9 7 6 41 41 H 1.09001 * 109.46980 * 60.00059 * 9 7 6 42 42 H 1.09002 * 109.47045 * 299.99967 * 10 9 7 43 43 H 1.09001 * 109.47375 * 60.00042 * 10 9 7 44 44 H 0.97000 * 119.99708 * 0.02562 * 13 11 10 45 45 H 1.09008 * 110.36754 * 323.75238 * 16 14 13 46 46 H 1.09001 * 110.37100 * 86.07657 * 16 14 13 47 47 H 0.96992 * 120.00012 * 179.97438 * 21 20 18 48 48 H 1.08995 * 109.88296 * 239.55452 * 26 17 16 49 49 H 1.08999 * 110.00969 * 118.46668 * 26 17 16 50 50 H 0.96704 * 114.00518 * 293.51811 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4666 0.0000 7 6 6.3822 3.5769 0.0000 8 8 5.8606 4.6718 -0.0005 9 6 7.8845 3.4579 -0.0006 10 6 8.5068 4.8556 0.0002 11 6 10.0091 4.7366 -0.0010 12 8 10.5306 3.6417 -0.0019 13 7 10.7731 5.8469 -0.0011 14 6 12.2335 5.7312 -0.0018 15 1 12.5542 4.8620 -0.5760 16 6 12.7868 5.6765 1.4440 17 7 14.1720 6.1708 1.3365 18 6 15.1900 5.8875 2.2076 19 1 15.0089 5.2510 3.0610 20 6 16.4548 6.4175 1.9929 21 7 16.6756 7.1928 0.9524 22 14 17.8436 6.0304 3.1807 23 1 17.3397 5.1425 4.2591 24 1 18.9428 5.3481 2.4516 25 1 18.3527 7.2923 3.7754 26 6 14.2790 7.0185 0.1401 27 6 12.8938 7.0279 -0.5402 28 1 12.3222 7.9057 -0.2387 29 8 13.0284 6.9741 -1.9618 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6435 -0.8892 36 1 3.8568 0.6438 0.8907 37 1 3.8364 3.1227 -0.8904 38 1 3.8359 3.1237 0.8896 39 1 6.0354 1.5909 0.0000 40 1 8.2064 2.9167 0.8891 41 1 8.2058 2.9172 -0.8908 42 1 8.1849 5.3971 -0.8893 43 1 8.1855 5.3959 0.8907 44 1 10.3559 6.7226 -0.0001 45 1 12.2030 6.3240 2.0984 46 1 12.7767 4.6518 1.8156 47 1 17.5594 7.5635 0.8027 48 1 15.0236 6.6062 -0.5408 49 1 14.5589 8.0326 0.4252 50 1 13.4360 7.7612 -2.3484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001197656683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:47 Heat of formation + Delta-G solvation = -151.412556 kcal Electronic energy + Delta-G solvation = -29079.897515 eV Core-core repulsion = 24721.799032 eV Total energy + Delta-G solvation = -4358.098484 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.23933 -39.49944 -38.51904 -37.83670 -35.84941 -35.06871 -34.02574 -33.12197 -32.24499 -31.60694 -28.56262 -27.79026 -27.14647 -26.05477 -24.75860 -23.94179 -22.24643 -20.93624 -20.53390 -20.26356 -19.91983 -17.82270 -17.22685 -17.04388 -16.92118 -16.81495 -16.22396 -16.19592 -15.87766 -15.66719 -15.31060 -15.25874 -14.65196 -14.44277 -14.10609 -13.96425 -13.54666 -13.31980 -12.95682 -12.78422 -12.67220 -12.50441 -12.42357 -12.37076 -12.10760 -12.04524 -11.66974 -11.65516 -11.51296 -11.30164 -11.25139 -10.88458 -10.82902 -10.24444 -10.15874 -10.12744 -9.89885 -9.84552 -9.76448 -9.47156 -9.29773 -8.81851 -8.62682 -6.91120 -5.76338 -3.10795 2.37098 2.62511 2.81665 3.24078 3.38682 3.43721 3.46088 3.48221 4.34327 4.34383 4.44351 4.50350 4.54222 4.63106 4.78745 4.80672 4.81950 4.88329 4.90555 4.96337 5.03013 5.14090 5.16510 5.21662 5.44018 5.46286 5.50800 5.55616 5.58808 5.65270 5.69974 5.76205 5.83430 6.03149 6.09179 6.14848 6.53826 6.56785 6.62251 6.89907 7.10996 7.32858 7.47082 7.69151 7.75389 7.90017 8.11981 8.17458 8.41832 9.15247 9.75309 10.38374 11.35533 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025792 B = 0.001455 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.331085 B =19241.469589 C =19992.798329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.733 5.733 7 C 0.516 3.484 8 O -0.542 6.542 9 C -0.124 4.124 10 C -0.124 4.124 11 C 0.513 3.487 12 O -0.543 6.543 13 N -0.715 5.715 14 C 0.138 3.862 15 H 0.103 0.897 16 C 0.130 3.870 17 N -0.600 5.600 18 C -0.228 4.228 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.924 5.924 22 Si 0.915 3.085 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.153 3.847 27 C 0.068 3.932 28 H 0.058 0.942 29 O -0.563 6.563 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.404 0.596 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.398 0.602 45 H 0.024 0.976 46 H 0.050 0.950 47 H 0.253 0.747 48 H 0.061 0.939 49 H 0.049 0.951 50 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.240 -7.724 -4.288 30.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.013 4.013 4 C -0.170 4.170 5 C -0.002 4.002 6 N -0.386 5.386 7 C 0.303 3.697 8 O -0.419 6.419 9 C -0.165 4.165 10 C -0.165 4.165 11 C 0.299 3.701 12 O -0.421 6.421 13 N -0.365 5.365 14 C 0.033 3.967 15 H 0.121 0.879 16 C 0.003 3.997 17 N -0.328 5.328 18 C -0.356 4.356 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.572 5.572 22 Si 0.745 3.255 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.028 3.972 27 C 0.008 3.992 28 H 0.075 0.925 29 O -0.368 6.368 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.239 0.761 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.232 0.768 45 H 0.041 0.959 46 H 0.068 0.932 47 H 0.063 0.937 48 H 0.079 0.921 49 H 0.067 0.933 50 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -29.184 -8.418 -4.177 30.660 hybrid contribution 0.792 0.705 0.524 1.183 sum -28.392 -7.712 -3.653 29.647 Atomic orbital electron populations 1.22763 0.80613 1.02969 1.00153 1.87862 1.20046 1.27811 1.95481 1.22379 0.93231 0.84927 1.00781 1.21685 0.93996 0.96965 1.04358 1.21158 0.79935 0.96365 1.02743 1.45963 1.06629 1.09534 1.76509 1.20814 0.89827 0.83924 0.75126 1.90710 1.75353 1.26569 1.49220 1.21370 0.89960 0.98938 1.06207 1.21356 0.91430 0.97897 1.05781 1.20555 0.89201 0.84481 0.75900 1.90711 1.75182 1.26491 1.49676 1.45932 1.07051 1.08746 1.74772 1.22250 0.77576 0.98813 0.98096 0.87869 1.21858 0.87056 0.98200 0.92621 1.44260 1.04698 1.56195 1.27636 1.19146 0.87761 1.25384 1.03320 0.90080 1.24812 0.97536 0.99729 0.98296 1.69933 1.21459 1.36905 1.28857 0.85998 0.82094 0.77468 0.79927 1.20414 1.21665 1.21721 1.21814 0.90415 0.96255 0.88734 1.23455 0.98931 0.95854 0.80954 0.92453 1.86463 1.84525 1.45668 1.20177 0.93907 0.93921 0.89459 0.92838 0.92841 0.90202 0.90177 0.91237 0.91216 0.76127 0.87803 0.87863 0.88244 0.88162 0.76775 0.95872 0.93152 0.93708 0.92130 0.93337 0.77669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.25 16 2 O -0.39 -2.80 10.70 -35.23 -0.38 -3.18 16 3 C 0.06 0.34 5.94 37.16 0.22 0.56 16 4 C -0.13 -0.65 5.70 -26.73 -0.15 -0.80 16 5 C 0.12 0.76 5.67 -4.04 -0.02 0.74 16 6 N -0.73 -5.05 5.56 -60.29 -0.33 -5.38 16 7 C 0.52 5.01 7.83 -10.98 -0.09 4.92 16 8 O -0.54 -7.10 15.98 5.56 0.09 -7.01 16 9 C -0.12 -1.16 4.99 -27.88 -0.14 -1.30 16 10 C -0.12 -1.31 4.99 -27.88 -0.14 -1.45 16 11 C 0.51 7.42 7.83 -10.98 -0.09 7.33 16 12 O -0.54 -9.88 15.67 5.56 0.09 -9.79 16 13 N -0.71 -10.45 5.21 -51.73 -0.27 -10.72 16 14 C 0.14 2.59 3.09 -65.79 -0.20 2.39 16 15 H 0.10 2.24 7.63 -51.93 -0.40 1.84 16 16 C 0.13 2.78 6.93 -2.51 -0.02 2.77 16 17 N -0.60 -15.39 3.40 -170.04 -0.58 -15.97 16 18 C -0.23 -6.39 10.28 -15.06 -0.15 -6.55 16 19 H 0.08 2.21 7.83 -52.49 -0.41 1.79 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.81 10.31 55.49 0.57 -26.24 16 22 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.15 3.64 5.15 -3.06 -0.02 3.63 16 27 C 0.07 1.25 3.97 -24.89 -0.10 1.16 16 28 H 0.06 0.93 8.00 -51.93 -0.42 0.51 16 29 O -0.56 -9.74 13.39 -35.23 -0.47 -10.21 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.04 0.15 8.14 -51.93 -0.42 -0.28 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.40 1.85 8.47 -40.82 -0.35 1.50 16 40 H 0.10 0.93 8.10 -51.93 -0.42 0.51 16 41 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 42 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16 43 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 44 H 0.40 4.65 8.54 -40.82 -0.35 4.30 16 45 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 46 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 48 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 49 H 0.05 1.24 7.50 -51.93 -0.39 0.85 16 50 H 0.38 4.93 9.12 45.56 0.42 5.35 16 LS Contribution 414.61 15.07 6.25 6.25 Total: -1.00 -36.55 414.61 -7.67 -44.22 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -7.74 Total: 6.61 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: 0.12 Total: 14.32 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.61 Total: -58.31 kcal Atomic # 8 Polarization: -29.52 SS G_CDS: -0.67 Total: -30.19 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -36.55 -7.67 -44.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197656683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.190 kcal (2) G-P(sol) polarization free energy of solvation -36.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds