Wall clock time and date at job start Wed Apr 1 2020 02:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.53001 * 109.47145 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.46886 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47084 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47084 * 180.02562 * 10 9 7 12 12 O 1.21273 * 119.99963 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99944 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99872 * 179.97438 * 13 11 10 15 15 H 1.08999 * 110.88630 * 34.30339 * 14 13 11 16 16 C 1.54901 * 111.00639 * 270.42027 * 14 13 11 17 17 N 1.47467 * 104.81142 * 204.95068 * 16 14 13 18 18 C 1.36940 * 125.62901 * 204.04743 * 17 16 14 19 19 H 1.07997 * 120.00020 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99915 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00404 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99971 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47294 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47229 * 120.00237 * 22 20 18 25 25 H 1.48501 * 109.47621 * 240.00359 * 22 20 18 26 26 C 1.47020 * 108.72239 * 24.07076 * 17 16 14 27 27 C 1.54325 * 107.27239 * 358.97539 * 26 17 16 28 28 H 1.09005 * 110.71815 * 96.16785 * 27 26 17 29 29 O 1.42893 * 110.71759 * 219.44473 * 27 26 17 30 30 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 31 31 H 1.09000 * 109.47330 * 59.99777 * 1 2 3 32 32 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46621 * 60.00032 * 3 2 1 34 34 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 35 35 H 1.09001 * 109.46652 * 60.00333 * 4 3 2 36 36 H 1.08992 * 109.47514 * 300.00423 * 4 3 2 37 37 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 38 38 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 39 39 H 0.97000 * 120.00420 * 0.02562 * 6 5 4 40 40 H 1.09002 * 109.47152 * 300.00160 * 9 7 6 41 41 H 1.09001 * 109.46980 * 60.00059 * 9 7 6 42 42 H 1.09002 * 109.47045 * 299.99967 * 10 9 7 43 43 H 1.09001 * 109.47375 * 60.00042 * 10 9 7 44 44 H 0.97000 * 119.99708 * 0.02562 * 13 11 10 45 45 H 1.09008 * 110.36754 * 323.75238 * 16 14 13 46 46 H 1.09001 * 110.37100 * 86.07657 * 16 14 13 47 47 H 0.96992 * 120.00012 * 179.97438 * 21 20 18 48 48 H 1.08995 * 109.88296 * 239.55452 * 26 17 16 49 49 H 1.08999 * 110.00969 * 118.46668 * 26 17 16 50 50 H 0.96704 * 114.00518 * 293.51811 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4666 0.0000 7 6 6.3822 3.5769 0.0000 8 8 5.8606 4.6718 -0.0005 9 6 7.8845 3.4579 -0.0006 10 6 8.5068 4.8556 0.0002 11 6 10.0091 4.7366 -0.0010 12 8 10.5306 3.6417 -0.0019 13 7 10.7731 5.8469 -0.0011 14 6 12.2335 5.7312 -0.0018 15 1 12.5542 4.8620 -0.5760 16 6 12.7868 5.6765 1.4440 17 7 14.1720 6.1708 1.3365 18 6 15.1900 5.8875 2.2076 19 1 15.0089 5.2510 3.0610 20 6 16.4548 6.4175 1.9929 21 7 16.6756 7.1928 0.9524 22 14 17.8436 6.0304 3.1807 23 1 17.3397 5.1425 4.2591 24 1 18.9428 5.3481 2.4516 25 1 18.3527 7.2923 3.7754 26 6 14.2790 7.0185 0.1401 27 6 12.8938 7.0279 -0.5402 28 1 12.3222 7.9057 -0.2387 29 8 13.0284 6.9741 -1.9618 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6435 -0.8892 36 1 3.8568 0.6438 0.8907 37 1 3.8364 3.1227 -0.8904 38 1 3.8359 3.1237 0.8896 39 1 6.0354 1.5909 0.0000 40 1 8.2064 2.9167 0.8891 41 1 8.2058 2.9172 -0.8908 42 1 8.1849 5.3971 -0.8893 43 1 8.1855 5.3959 0.8907 44 1 10.3559 6.7226 -0.0001 45 1 12.2030 6.3240 2.0984 46 1 12.7767 4.6518 1.8156 47 1 17.5594 7.5635 0.8027 48 1 15.0236 6.6062 -0.5408 49 1 14.5589 8.0326 0.4252 50 1 13.4360 7.7612 -2.3484 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197656683.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:51:46 Heat of formation + Delta-G solvation = -182.822651 kcal Electronic energy + Delta-G solvation = -29081.259559 eV Core-core repulsion = 24721.799032 eV Total energy + Delta-G solvation = -4359.460528 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.22683 -40.58724 -39.37014 -38.94132 -36.67414 -36.45954 -35.54226 -34.03965 -33.53169 -32.74170 -30.26691 -28.95383 -28.15052 -26.96699 -26.14390 -24.97662 -22.72150 -22.44571 -21.97584 -21.53657 -20.97808 -19.11424 -18.70120 -18.17356 -17.67437 -17.40144 -17.33353 -17.16449 -16.95604 -16.57617 -16.40062 -16.08045 -15.77767 -15.71400 -15.34980 -15.18330 -14.78422 -14.48525 -14.33887 -14.09920 -13.91195 -13.72816 -13.33440 -13.16297 -13.12787 -13.04283 -12.88126 -12.76846 -12.73694 -12.69077 -12.14024 -12.06091 -12.05429 -12.05182 -11.89152 -11.52852 -11.12615 -10.94448 -10.79379 -10.76718 -10.63903 -10.13777 -10.09988 -8.96864 -7.89100 -5.26264 1.45753 1.47080 1.57354 1.62496 1.65304 1.90429 2.28815 2.48531 2.90867 3.13391 3.32062 3.55733 3.58100 3.85882 3.93420 3.94500 4.03785 4.07072 4.15163 4.17220 4.19784 4.25090 4.44506 4.46432 4.49712 4.51103 4.56722 4.57687 4.68289 4.71811 4.83241 4.86629 4.89978 4.99684 5.04563 5.09321 5.11422 5.37117 5.43468 5.44045 5.49311 5.66459 6.13388 6.20021 6.50562 6.57500 6.86858 7.04658 7.21663 7.28043 7.69243 8.31598 9.20867 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.025792 B = 0.001455 C = 0.001400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.331085 B =19241.469589 C =19992.798329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.060 3.940 4 C -0.122 4.122 5 C 0.124 3.876 6 N -0.722 5.722 7 C 0.519 3.481 8 O -0.578 6.578 9 C -0.121 4.121 10 C -0.112 4.112 11 C 0.513 3.487 12 O -0.582 6.582 13 N -0.704 5.704 14 C 0.153 3.847 15 H 0.072 0.928 16 C 0.131 3.869 17 N -0.622 5.622 18 C -0.248 4.248 19 H 0.082 0.918 20 C -0.061 4.061 21 N -0.949 5.949 22 Si 0.980 3.020 23 H -0.267 1.267 24 H -0.292 1.292 25 H -0.288 1.288 26 C 0.161 3.839 27 C 0.090 3.910 28 H 0.094 0.906 29 O -0.569 6.569 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.416 0.584 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.417 0.583 45 H 0.042 0.958 46 H 0.035 0.965 47 H 0.249 0.751 48 H 0.020 0.980 49 H 0.025 0.975 50 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.140 -7.741 -4.083 32.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.017 4.017 4 C -0.160 4.160 5 C 0.000 4.000 6 N -0.374 5.374 7 C 0.307 3.693 8 O -0.458 6.458 9 C -0.161 4.161 10 C -0.153 4.153 11 C 0.301 3.699 12 O -0.462 6.462 13 N -0.355 5.355 14 C 0.046 3.954 15 H 0.090 0.910 16 C 0.004 3.996 17 N -0.350 5.350 18 C -0.376 4.376 19 H 0.100 0.900 20 C -0.254 4.254 21 N -0.597 5.597 22 Si 0.808 3.192 23 H -0.192 1.192 24 H -0.219 1.219 25 H -0.214 1.214 26 C 0.035 3.965 27 C 0.030 3.970 28 H 0.112 0.888 29 O -0.377 6.377 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.113 0.887 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.253 0.747 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.131 0.869 43 H 0.131 0.869 44 H 0.254 0.746 45 H 0.060 0.940 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.038 0.962 49 H 0.043 0.957 50 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -31.139 -8.444 -3.980 32.508 hybrid contribution 1.332 0.659 0.438 1.549 sum -29.807 -7.785 -3.542 31.010 Atomic orbital electron populations 1.22919 0.79436 1.03796 1.00917 1.87817 1.21497 1.28791 1.95651 1.22459 0.93262 0.84527 1.01424 1.21572 0.93859 0.96000 1.04522 1.21162 0.79381 0.97083 1.02333 1.45899 1.06955 1.09569 1.75017 1.20791 0.89920 0.83898 0.74714 1.90698 1.75891 1.27908 1.51260 1.21336 0.89732 0.98348 1.06704 1.21317 0.87917 0.99035 1.06988 1.21246 0.90670 0.83555 0.74398 1.90702 1.76186 1.28019 1.51287 1.45740 1.05073 1.10092 1.74644 1.21712 0.80113 0.97814 0.95745 0.91003 1.21955 0.85535 0.97415 0.94704 1.44529 1.05940 1.56724 1.27790 1.19499 0.88902 1.25333 1.03897 0.90021 1.25642 0.99799 0.99913 1.00062 1.70136 1.21584 1.37718 1.30284 0.84989 0.78792 0.77299 0.78105 1.19155 1.21928 1.21431 1.21621 0.92911 0.94168 0.87810 1.23152 0.95754 0.96900 0.81176 0.88813 1.86428 1.84617 1.47407 1.19207 0.93159 0.93137 0.88709 0.92246 0.92194 0.89985 0.90023 0.91625 0.91674 0.74680 0.87412 0.87374 0.86909 0.86880 0.74571 0.94023 0.94647 0.94161 0.96182 0.95670 0.75384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.42 -5.50 10.70 -148.98 -1.59 -7.10 16 3 C 0.06 0.56 5.94 71.98 0.43 0.98 16 4 C -0.12 -1.01 5.70 30.59 0.17 -0.84 16 5 C 0.12 1.37 5.67 86.38 0.49 1.86 16 6 N -0.72 -8.68 5.56 -463.05 -2.57 -11.26 16 7 C 0.52 9.15 7.83 87.66 0.69 9.84 16 8 O -0.58 -14.21 15.98 -3.02 -0.05 -14.26 16 9 C -0.12 -2.03 4.99 29.85 0.15 -1.88 16 10 C -0.11 -2.12 4.99 29.85 0.15 -1.97 16 11 C 0.51 14.00 7.83 87.66 0.69 14.69 16 12 O -0.58 -20.81 15.67 -3.01 -0.05 -20.86 16 13 N -0.70 -19.11 5.21 -435.98 -2.27 -21.38 16 14 C 0.15 5.64 3.09 46.38 0.14 5.78 16 15 H 0.07 3.15 7.63 -2.39 -0.02 3.13 16 16 C 0.13 5.56 6.93 86.84 0.60 6.16 16 17 N -0.62 -32.41 3.40 -691.90 -2.35 -34.76 16 18 C -0.25 -14.11 10.28 84.03 0.86 -13.24 16 19 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 20 C -0.06 -3.47 5.49 84.86 0.47 -3.01 16 21 N -0.95 -56.40 10.31 21.65 0.22 -56.18 16 22 Si 0.98 45.92 29.55 68.60 2.03 47.95 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 25 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 26 C 0.16 7.77 5.15 86.73 0.45 8.22 16 27 C 0.09 3.22 3.97 31.78 0.13 3.34 16 28 H 0.09 2.72 8.00 -2.38 -0.02 2.70 16 29 O -0.57 -18.82 13.39 -148.98 -1.99 -20.81 16 30 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.42 3.00 8.47 -92.71 -0.79 2.21 16 40 H 0.11 1.75 8.10 -2.39 -0.02 1.73 16 41 H 0.11 1.73 8.10 -2.39 -0.02 1.71 16 42 H 0.11 1.90 8.10 -2.39 -0.02 1.88 16 43 H 0.11 1.91 8.10 -2.39 -0.02 1.89 16 44 H 0.42 8.36 8.54 -92.71 -0.79 7.57 16 45 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 46 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 48 H 0.02 1.12 7.30 -2.39 -0.02 1.10 16 49 H 0.03 1.31 7.50 -2.39 -0.02 1.30 16 50 H 0.40 9.68 9.12 -74.05 -0.68 9.00 16 Total: -1.00 -80.51 414.61 -3.26 -83.77 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -1.29 Total: 23.52 kcal Atomic # 6 Polarization: 24.72 SS G_CDS: 6.66 Total: 31.38 kcal Atomic # 7 Polarization: -116.61 SS G_CDS: -6.97 Total: -123.58 kcal Atomic # 8 Polarization: -59.35 SS G_CDS: -3.68 Total: -63.03 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -80.51 -3.26 -83.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197656683.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.057 kcal (2) G-P(sol) polarization free energy of solvation -80.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds