Wall clock time and date at job start Wed Apr 1 2020 02:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99763 * 2 1 4 4 C 1.53003 * 109.46944 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47060 * 179.97438 * 4 3 2 6 6 O 1.21289 * 120.00182 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99976 * 179.97438 * 5 4 3 8 8 C 1.47509 * 118.75669 * 0.02562 * 7 5 4 9 9 C 1.53572 * 111.02843 * 138.34842 * 8 7 5 10 10 C 1.51530 * 109.57842 * 320.01810 * 9 8 7 11 11 O 1.42153 * 108.75046 * 91.40682 * 10 9 8 12 12 C 1.38020 * 119.44077 * 272.76251 * 11 10 9 13 13 H 1.08997 * 109.46898 * 303.43434 * 12 11 10 14 14 C 1.52997 * 109.47101 * 183.43383 * 12 11 10 15 15 N 1.46901 * 109.47125 * 64.99157 * 14 12 11 16 16 C 1.46898 * 110.99614 * 179.97438 * 15 14 12 17 17 C 1.50706 * 109.46984 * 180.02562 * 16 15 14 18 18 O 1.21295 * 119.99863 * 359.97438 * 17 16 15 19 19 N 1.34773 * 120.00080 * 180.02562 * 17 16 15 20 20 C 1.37105 * 119.99873 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99509 * 359.71860 * 20 19 17 22 22 C 1.38950 * 120.00048 * 179.72298 * 20 19 17 23 23 N 1.31413 * 119.99930 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99918 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47151 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47086 * 119.99941 * 24 22 20 27 27 H 1.48500 * 109.46879 * 239.99997 * 24 22 20 28 28 C 1.45125 * 118.75857 * 180.02562 * 7 5 4 29 29 H 1.09004 * 109.47330 * 299.99855 * 1 2 3 30 30 H 1.09003 * 109.47515 * 60.00178 * 1 2 3 31 31 H 1.09007 * 109.47325 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47259 * 60.00347 * 3 2 1 33 33 H 1.09000 * 109.47138 * 299.99804 * 3 2 1 34 34 H 1.09002 * 109.46864 * 60.00100 * 4 3 2 35 35 H 1.09000 * 109.47039 * 299.99859 * 4 3 2 36 36 H 1.08999 * 109.16729 * 258.74365 * 8 7 5 37 37 H 1.09002 * 109.16710 * 17.99575 * 8 7 5 38 38 H 1.08993 * 109.45421 * 80.05693 * 9 8 7 39 39 H 1.09005 * 109.44887 * 199.99092 * 9 8 7 40 40 H 1.09003 * 109.59387 * 211.18337 * 10 9 8 41 41 H 1.08996 * 109.59629 * 331.47637 * 10 9 8 42 42 H 1.09002 * 109.46945 * 304.99415 * 14 12 11 43 43 H 1.09000 * 109.47247 * 184.99777 * 14 12 11 44 44 H 1.00897 * 110.99725 * 56.05049 * 15 14 12 45 45 H 1.09004 * 109.47320 * 60.00702 * 16 15 14 46 46 H 1.09001 * 109.47291 * 299.99999 * 16 15 14 47 47 H 0.96996 * 119.99858 * 359.72084 * 19 17 16 48 48 H 0.96999 * 119.99993 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.46214 * 149.28664 * 28 7 5 50 50 H 1.08998 * 109.44699 * 29.31608 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1483 2.5614 -0.0013 6 8 3.4354 3.5426 -0.0008 7 7 5.4887 2.7023 -0.0014 8 6 6.3297 1.4904 -0.0015 9 6 7.5237 1.6483 -0.9542 10 6 7.0764 2.3590 -2.2155 11 8 7.2656 3.7574 -2.0436 12 6 6.2666 4.5106 -1.4609 13 1 5.3418 4.3852 -2.0240 14 6 6.6711 5.9861 -1.4666 15 7 6.7601 6.4641 -2.8528 16 6 7.1467 7.8806 -2.8974 17 6 7.2270 8.3345 -4.3322 18 8 6.9864 7.5545 -5.2294 19 7 7.5672 9.6068 -4.6185 20 6 7.6397 10.0198 -5.9238 21 1 7.4286 9.3244 -6.7227 22 6 7.9848 11.3331 -6.2188 23 7 8.2412 12.1793 -5.2467 24 14 8.0843 11.8956 -7.9974 25 1 7.7528 10.7600 -8.8950 26 1 7.1196 13.0022 -8.2212 27 1 9.4602 12.3716 -8.2897 28 6 6.0501 4.0405 -0.0014 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8463 -0.8900 34 1 3.8566 0.6439 -0.8909 35 1 3.8574 0.6436 0.8891 36 1 6.6989 1.3109 1.0083 37 1 5.7292 0.6381 -0.3195 38 1 8.3034 2.2323 -0.4654 39 1 7.9153 0.6641 -1.2116 40 1 7.6698 2.0112 -3.0611 41 1 6.0223 2.1504 -2.3984 42 1 7.6402 6.0990 -0.9805 43 1 5.9244 6.5697 -0.9282 44 1 5.8926 6.3108 -3.3445 45 1 8.1190 8.0071 -2.4210 46 1 6.4029 8.4770 -2.3691 47 1 7.7564 10.2314 -3.9009 48 1 8.4825 13.0959 -5.4526 49 1 7.0054 4.0337 0.5234 50 1 5.3641 4.7219 0.5019 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199653615.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:16 Heat of formation + Delta-G solvation = -151.280782 kcal Electronic energy + Delta-G solvation = -30277.837280 eV Core-core repulsion = 25919.744510 eV Total energy + Delta-G solvation = -4358.092770 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.98144 -39.06532 -38.19673 -38.03731 -36.06331 -35.26103 -33.85079 -33.07656 -32.28795 -31.16604 -29.81290 -27.79528 -26.81193 -26.46907 -25.01628 -23.91120 -22.80497 -22.00541 -21.47866 -19.32639 -19.18232 -18.03335 -17.83616 -16.98797 -16.88712 -16.85674 -16.40693 -16.17670 -15.76012 -15.30676 -15.25100 -15.00114 -14.60860 -14.40928 -14.28173 -14.22777 -13.76436 -13.44298 -13.37966 -13.25332 -13.05830 -12.84853 -12.43119 -12.36823 -11.95317 -11.86640 -11.80539 -11.77331 -11.55225 -11.46053 -11.40581 -11.28405 -11.01177 -10.60301 -10.30636 -10.19115 -10.16770 -10.10976 -9.74966 -9.46905 -8.93683 -8.38184 -7.95669 -7.89268 -6.36920 -3.77387 2.19122 2.42629 3.19902 3.29927 3.32265 3.37693 3.56287 3.97467 4.10494 4.14697 4.28231 4.35883 4.46933 4.54582 4.57455 4.72530 4.88917 4.92562 4.94642 4.95524 5.03059 5.06858 5.15583 5.19568 5.24837 5.26037 5.28360 5.30216 5.31925 5.36155 5.38679 5.52399 5.57602 5.70327 5.82009 5.88140 5.91503 6.05463 6.18020 6.33123 6.66920 6.85683 7.27454 7.59927 7.60304 7.73677 7.76518 8.12186 8.67205 9.23318 9.60241 10.12205 10.81069 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016723 B = 0.001840 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.924239 B =15215.018453 C =15989.045341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.075 3.925 4 C -0.140 4.140 5 C 0.512 3.488 6 O -0.535 6.535 7 N -0.609 5.609 8 C 0.102 3.898 9 C -0.168 4.168 10 C 0.074 3.926 11 O -0.363 6.363 12 C 0.099 3.901 13 H 0.051 0.949 14 C 0.070 3.930 15 N -0.659 5.659 16 C 0.051 3.949 17 C 0.443 3.557 18 O -0.581 6.581 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.079 3.921 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.047 0.953 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.348 0.652 45 H 0.087 0.913 46 H 0.042 0.958 47 H 0.392 0.608 48 H 0.270 0.730 49 H 0.086 0.914 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.547 -24.514 17.091 30.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.315 6.315 3 C -0.002 4.002 4 C -0.179 4.179 5 C 0.300 3.700 6 O -0.411 6.411 7 N -0.342 5.342 8 C -0.020 4.020 9 C -0.206 4.206 10 C -0.003 4.003 11 O -0.280 6.280 12 C 0.039 3.961 13 H 0.069 0.931 14 C -0.060 4.060 15 N -0.292 5.292 16 C -0.082 4.082 17 C 0.228 3.772 18 O -0.465 6.465 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.045 4.045 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.065 0.935 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.167 0.833 45 H 0.105 0.895 46 H 0.060 0.940 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.104 0.896 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.101 -24.626 16.330 30.389 hybrid contribution -0.964 1.197 0.093 1.540 sum -8.065 -23.429 16.422 29.726 Atomic orbital electron populations 1.22748 0.80401 1.02815 1.00354 1.87785 1.20237 1.27923 1.95601 1.22175 0.91759 0.84320 1.01949 1.21533 0.95640 0.95242 1.05518 1.20527 0.82217 0.91225 0.75989 1.90742 1.60463 1.40780 1.49162 1.47893 1.05740 1.07099 1.73483 1.22079 0.93023 0.86451 1.00426 1.22521 0.98099 1.02614 0.97385 1.22139 1.00502 0.81122 0.96522 1.86445 1.42760 1.18600 1.80235 1.21956 0.91282 0.91355 0.91531 0.93108 1.21895 1.01413 0.91513 0.91170 1.59978 1.39649 1.17355 1.12173 1.21680 1.01193 0.88536 0.96760 1.19819 0.84302 0.83292 0.89765 1.90525 1.54558 1.53598 1.47855 1.41866 1.60507 1.09107 1.08783 1.19761 1.43572 0.95308 0.84049 0.87892 1.25257 0.97314 0.95756 0.99726 1.69624 1.47428 1.05466 1.31919 0.85800 0.77725 0.78652 0.82158 1.19241 1.20825 1.20776 1.22431 1.00028 0.83288 0.98747 0.93908 0.93792 0.89462 0.92338 0.92232 0.87902 0.87973 0.91118 0.89557 0.89848 0.89366 0.88930 0.93452 0.90078 0.93839 0.83324 0.89516 0.93966 0.77474 0.91995 0.89563 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.40 -3.43 10.70 -35.23 -0.38 -3.80 16 3 C 0.07 0.64 5.23 37.16 0.19 0.83 16 4 C -0.14 -0.99 4.41 -27.88 -0.12 -1.11 16 5 C 0.51 5.08 7.63 -10.99 -0.08 5.00 16 6 O -0.53 -7.33 15.41 5.55 0.09 -7.25 16 7 N -0.61 -5.22 2.19 -172.44 -0.38 -5.59 16 8 C 0.10 0.56 6.00 -3.19 -0.02 0.54 16 9 C -0.17 -1.04 5.78 -27.18 -0.16 -1.20 16 10 C 0.07 0.70 6.37 36.41 0.23 0.93 16 11 O -0.36 -4.72 9.40 -26.55 -0.25 -4.97 16 12 C 0.10 1.22 2.82 -25.76 -0.07 1.15 16 13 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 14 C 0.07 0.94 5.35 -3.83 -0.02 0.92 16 15 N -0.66 -11.56 6.06 -115.05 -0.70 -12.26 16 16 C 0.05 0.95 6.17 -4.97 -0.03 0.92 16 17 C 0.44 10.89 7.82 -10.98 -0.09 10.81 16 18 O -0.58 -16.45 15.78 5.54 0.09 -16.36 16 19 N -0.57 -14.78 5.29 -10.96 -0.06 -14.84 16 20 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 21 H 0.10 3.10 7.16 -52.49 -0.38 2.72 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -25.02 13.05 55.50 0.72 -24.30 16 24 Si 0.93 21.48 29.55 -169.99 -5.02 16.45 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 C 0.08 0.77 4.87 -3.80 -0.02 0.76 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.06 0.56 8.10 -51.93 -0.42 0.13 16 34 H 0.10 0.60 7.41 -51.93 -0.38 0.22 16 35 H 0.10 0.55 8.04 -51.93 -0.42 0.13 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.33 5.88 -51.93 -0.31 0.02 16 38 H 0.08 0.59 8.01 -51.93 -0.42 0.18 16 39 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.45 7.41 -51.93 -0.38 0.07 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.35 6.40 8.43 -39.29 -0.33 6.07 16 45 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.39 9.76 7.90 -40.82 -0.32 9.44 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 50 H 0.09 1.00 7.27 -51.93 -0.38 0.62 16 LS Contribution 407.08 15.07 6.13 6.13 Total: -1.00 -35.59 407.08 -7.43 -43.02 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -8.36 Total: 11.10 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 0.69 Total: 12.66 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.41 Total: -56.99 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.45 Total: -32.38 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.59 -7.43 -43.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199653615.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.262 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds