Wall clock time and date at job start Wed Apr 1 2020 02:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.42904 * 109.47434 * 2 1 4 4 C 1.42892 * 114.00139 * 180.02562 * 3 2 1 5 5 C 1.50710 * 109.46910 * 179.97438 * 4 3 2 6 6 O 1.21277 * 119.99729 * 359.97438 * 5 4 3 7 7 N 1.34776 * 119.99931 * 179.97438 * 5 4 3 8 8 C 1.47516 * 118.75777 * 359.97438 * 7 5 4 9 9 C 1.53569 * 111.02816 * 138.09444 * 8 7 5 10 10 C 1.51537 * 109.58194 * 320.02556 * 9 8 7 11 11 O 1.42147 * 108.75924 * 91.40019 * 10 9 8 12 12 C 1.38024 * 119.43748 * 272.76935 * 11 10 9 13 13 H 1.08995 * 109.46682 * 303.43060 * 12 11 10 14 14 C 1.53001 * 109.46872 * 183.43443 * 12 11 10 15 15 N 1.46896 * 109.47464 * 64.99725 * 14 12 11 16 16 C 1.46900 * 111.00265 * 179.97438 * 15 14 12 17 17 C 1.50694 * 109.47162 * 180.02562 * 16 15 14 18 18 O 1.21292 * 120.00215 * 359.97438 * 17 16 15 19 19 N 1.34782 * 120.00041 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00033 * 179.97438 * 19 17 16 21 21 H 1.08001 * 120.00051 * 359.97438 * 20 19 17 22 22 C 1.38946 * 119.99697 * 179.97438 * 20 19 17 23 23 N 1.31416 * 120.00237 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99825 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47316 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47168 * 119.99966 * 24 22 20 27 27 H 1.48505 * 109.46947 * 239.99880 * 24 22 20 28 28 C 1.45121 * 118.75620 * 179.73054 * 7 5 4 29 29 H 1.09005 * 109.47632 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47577 * 300.00096 * 1 2 3 31 31 H 1.09005 * 109.47449 * 60.00317 * 1 2 3 32 32 H 1.09004 * 109.47429 * 240.00182 * 2 1 3 33 33 H 1.09005 * 109.47028 * 120.00014 * 2 1 3 34 34 H 1.08996 * 109.47577 * 60.00225 * 4 3 2 35 35 H 1.08997 * 109.47293 * 299.99395 * 4 3 2 36 36 H 1.09004 * 109.16520 * 258.49568 * 8 7 5 37 37 H 1.09001 * 109.16363 * 17.69564 * 8 7 5 38 38 H 1.09001 * 109.45237 * 80.05784 * 9 8 7 39 39 H 1.08997 * 109.45497 * 200.01242 * 9 8 7 40 40 H 1.09001 * 109.58927 * 211.18332 * 10 9 8 41 41 H 1.08998 * 109.59121 * 331.46526 * 10 9 8 42 42 H 1.08996 * 109.47123 * 185.00233 * 14 12 11 43 43 H 1.09002 * 109.46962 * 304.99943 * 14 12 11 44 44 H 1.00901 * 111.00202 * 303.95553 * 15 14 12 45 45 H 1.08996 * 109.46928 * 300.00243 * 16 15 14 46 46 H 1.09002 * 109.46900 * 60.00541 * 16 15 14 47 47 H 0.96999 * 119.99943 * 359.97438 * 19 17 16 48 48 H 0.96998 * 119.99945 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.45957 * 29.58493 * 28 7 5 50 50 H 1.09005 * 109.45658 * 149.53940 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8194 2.9162 -0.0012 6 8 2.9609 3.7729 -0.0016 7 7 5.1209 3.2663 -0.0013 8 6 6.1422 2.2019 -0.0002 9 6 7.2936 2.5420 -0.9577 10 6 6.7363 3.1688 -2.2198 11 8 6.7035 4.5801 -2.0533 12 6 5.6000 5.1688 -1.4696 13 1 4.7048 4.8972 -2.0290 14 6 5.7671 6.6896 -1.4817 15 7 5.7754 7.1703 -2.8698 16 6 5.9339 8.6299 -2.9206 17 6 5.9372 9.0851 -4.3571 18 8 5.8197 8.2735 -5.2508 19 7 6.0719 10.3940 -4.6489 20 6 6.0755 10.8081 -5.9559 21 1 5.9708 10.0855 -6.7517 22 6 6.2138 12.1576 -6.2567 23 7 6.3407 13.0370 -5.2884 24 14 6.2179 12.7219 -8.0374 25 1 6.0606 11.5455 -8.9299 26 1 5.0940 13.6666 -8.2599 27 1 7.5033 13.4023 -8.3380 28 6 5.4646 4.6762 -0.0078 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.8332 0.9767 -0.8908 35 1 3.8339 0.9765 0.8892 36 1 6.5379 2.0867 1.0089 37 1 5.6822 1.2643 -0.3124 38 1 7.9731 3.2435 -0.4735 39 1 7.8343 1.6308 -1.2135 40 1 7.3746 2.9154 -3.0662 41 1 5.7277 2.7961 -2.3983 42 1 4.9394 7.1504 -0.9426 43 1 6.7077 6.9556 -0.9995 44 1 6.4938 6.7094 -3.4078 45 1 5.1071 9.1037 -2.3916 46 1 6.8756 8.9097 -2.4482 47 1 6.1663 11.0431 -3.9343 48 1 6.4376 13.9790 -5.4984 49 1 4.6816 5.2432 0.4958 50 1 6.4106 4.8218 0.5137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199753713.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:34:10 Heat of formation + Delta-G solvation = -149.452744 kcal Electronic energy + Delta-G solvation = -30320.089072 eV Core-core repulsion = 25962.075572 eV Total energy + Delta-G solvation = -4358.013500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.95583 -39.14522 -38.17300 -37.87022 -36.06788 -35.21200 -33.83469 -32.99654 -31.99161 -31.15221 -30.20181 -28.62218 -26.80487 -26.44449 -24.62139 -23.27220 -23.11611 -22.13072 -21.41656 -19.56998 -19.16333 -17.88371 -17.82348 -17.41165 -17.04358 -16.82440 -16.53102 -16.07284 -15.77072 -15.33628 -15.22300 -14.84565 -14.46772 -14.30811 -14.26677 -14.00415 -13.58305 -13.49349 -13.32895 -13.20120 -13.05083 -12.79508 -12.57845 -12.49977 -11.96714 -11.87574 -11.81659 -11.68065 -11.57173 -11.53156 -11.42096 -11.30808 -11.00619 -10.71135 -10.29606 -10.16604 -10.15928 -10.01409 -9.82057 -9.45716 -8.93942 -8.36653 -7.95453 -7.88263 -6.35653 -3.76095 2.22271 2.30054 3.20892 3.30834 3.32271 3.38663 3.49743 3.98914 4.08054 4.12253 4.25155 4.31775 4.43481 4.53922 4.57069 4.66406 4.70490 4.78844 4.90400 4.91537 4.96967 5.06184 5.10916 5.15819 5.20773 5.23422 5.25491 5.32149 5.40633 5.49355 5.53750 5.58807 5.66911 5.73982 5.82610 5.87897 5.97023 6.07571 6.17942 6.34907 6.58882 6.89196 7.30434 7.50756 7.61398 7.82085 7.83034 8.13577 8.68571 9.24567 9.61595 10.13575 10.82348 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.001857 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.398134 B =15076.421407 C =15862.046714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.364 6.364 4 C 0.046 3.954 5 C 0.507 3.493 6 O -0.507 6.507 7 N -0.611 5.611 8 C 0.103 3.897 9 C -0.168 4.168 10 C 0.077 3.923 11 O -0.381 6.381 12 C 0.094 3.906 13 H 0.065 0.935 14 C 0.073 3.927 15 N -0.666 5.666 16 C 0.051 3.949 17 C 0.443 3.557 18 O -0.582 6.582 19 N -0.566 5.566 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.083 3.917 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.086 0.914 43 H 0.036 0.964 44 H 0.356 0.644 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.270 0.730 49 H 0.096 0.904 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 -27.656 17.100 32.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.282 6.282 4 C -0.034 4.034 5 C 0.294 3.706 6 O -0.380 6.380 7 N -0.347 5.347 8 C -0.019 4.019 9 C -0.206 4.206 10 C 0.000 4.000 11 O -0.300 6.300 12 C 0.034 3.966 13 H 0.083 0.917 14 C -0.057 4.057 15 N -0.299 5.299 16 C -0.082 4.082 17 C 0.228 3.772 18 O -0.466 6.466 19 N -0.203 5.203 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.041 4.041 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.104 0.896 43 H 0.054 0.946 44 H 0.177 0.823 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.114 0.886 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.526 -27.244 16.383 31.827 hybrid contribution 1.091 0.343 0.036 1.144 sum -0.436 -26.901 16.420 31.519 Atomic orbital electron populations 1.21736 0.93214 1.02321 1.03655 1.22563 0.96186 0.83179 1.00133 1.88049 1.18277 1.26537 1.95379 1.22251 0.84220 0.94655 1.02257 1.20362 0.82501 0.90780 0.76960 1.90772 1.48729 1.51636 1.46849 1.47849 1.05420 1.07012 1.74424 1.22048 0.89684 0.89733 1.00444 1.22514 0.98038 1.02726 0.97304 1.22120 1.00669 0.80685 0.96528 1.86267 1.42229 1.20999 1.80493 1.22063 0.89676 0.93092 0.91763 0.91697 1.21880 1.00921 0.91403 0.91511 1.60035 1.55699 1.04351 1.09853 1.21672 1.00619 0.89050 0.96872 1.19823 0.84185 0.83416 0.89739 1.90523 1.54831 1.53033 1.48181 1.41869 1.63866 1.05760 1.08777 1.19760 1.46556 0.92341 0.84012 0.87893 1.25257 0.97457 0.95612 0.99742 1.69625 1.50276 1.02523 1.32020 0.85799 0.77637 0.78720 0.82172 1.19246 1.20784 1.20830 1.22386 1.02465 0.80589 0.98654 0.90893 0.91644 0.91506 0.93119 0.93219 0.90314 0.90369 0.91039 0.90059 0.89797 0.89330 0.88899 0.93168 0.89557 0.94620 0.82344 0.89605 0.93848 0.77465 0.92001 0.88606 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 37.15 0.38 -0.57 16 2 C 0.06 0.37 6.66 37.15 0.25 0.62 16 3 O -0.36 -3.87 9.88 -55.14 -0.54 -4.41 16 4 C 0.05 0.36 4.75 36.01 0.17 0.53 16 5 C 0.51 5.71 7.71 -10.98 -0.08 5.63 16 6 O -0.51 -8.19 15.93 -14.35 -0.23 -8.42 16 7 N -0.61 -5.45 2.19 -172.43 -0.38 -5.83 16 8 C 0.10 0.53 6.00 -3.19 -0.02 0.51 16 9 C -0.17 -0.93 5.79 -27.18 -0.16 -1.09 16 10 C 0.08 0.67 6.37 36.42 0.23 0.90 16 11 O -0.38 -4.66 8.98 -26.57 -0.24 -4.89 16 12 C 0.09 1.19 2.88 -25.76 -0.07 1.11 16 13 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 14 C 0.07 1.00 5.39 -3.83 -0.02 0.98 16 15 N -0.67 -11.92 6.12 -115.07 -0.70 -12.63 16 16 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 17 C 0.44 11.00 7.82 -10.99 -0.09 10.91 16 18 O -0.58 -16.58 15.78 5.55 0.09 -16.50 16 19 N -0.57 -14.89 5.29 -10.96 -0.06 -14.95 16 20 C -0.30 -8.55 9.68 -14.93 -0.14 -8.69 16 21 H 0.10 3.11 7.16 -52.49 -0.38 2.73 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -25.15 13.05 55.50 0.72 -24.42 16 24 Si 0.93 21.58 29.55 -169.99 -5.02 16.56 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 C 0.08 0.84 4.87 -3.81 -0.02 0.82 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.08 0.44 7.42 -51.93 -0.39 0.05 16 35 H 0.08 0.39 8.04 -51.93 -0.42 -0.03 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.25 5.87 -51.93 -0.30 -0.05 16 38 H 0.08 0.54 8.01 -51.93 -0.42 0.12 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.46 7.41 -51.93 -0.38 0.08 16 42 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.36 6.75 7.99 -39.29 -0.31 6.44 16 45 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.10 1.08 7.28 -51.93 -0.38 0.71 16 50 H 0.08 0.72 8.11 -51.93 -0.42 0.30 16 LS Contribution 407.28 15.07 6.14 6.14 Total: -1.00 -36.96 407.28 -8.28 -45.24 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -8.35 Total: 11.07 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 0.30 Total: 13.05 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: -0.42 Total: -57.82 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.92 Total: -34.22 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.96 -8.28 -45.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199753713.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.214 kcal (2) G-P(sol) polarization free energy of solvation -36.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds