Wall clock time and date at job start Wed Apr 1 2020 02:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42899 * 114.00107 * 2 1 4 4 C 1.50709 * 109.47277 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99384 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99919 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99440 * 180.02562 * 6 4 3 8 8 H 1.09005 * 109.47521 * 324.99545 * 7 6 4 9 9 C 1.52996 * 109.47558 * 85.00346 * 7 6 4 10 10 C 1.50704 * 109.46773 * 205.00122 * 7 6 4 11 11 O 1.21284 * 120.00161 * 346.33067 * 10 7 6 12 12 N 1.34776 * 120.00109 * 166.33558 * 10 7 6 13 13 C 1.47512 * 118.75612 * 353.77011 * 12 10 7 14 14 C 1.53567 * 111.03362 * 138.34658 * 13 12 10 15 15 C 1.51540 * 109.57961 * 320.02520 * 14 13 12 16 16 O 1.42151 * 108.75351 * 91.39438 * 15 14 13 17 17 C 1.38013 * 119.44797 * 272.76797 * 16 15 14 18 18 H 1.09001 * 109.46929 * 303.43621 * 17 16 15 19 19 C 1.52992 * 109.47416 * 183.43381 * 17 16 15 20 20 N 1.46497 * 109.47286 * 64.99370 * 19 17 16 21 21 C 1.36931 * 120.00303 * 180.27756 * 20 19 17 22 22 H 1.08003 * 119.99925 * 359.72270 * 21 20 19 23 23 C 1.38808 * 120.00388 * 179.72293 * 21 20 19 24 24 N 1.31624 * 119.99890 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00485 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46904 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47114 * 119.99858 * 25 23 21 28 28 H 1.48499 * 109.47448 * 240.00034 * 25 23 21 29 29 C 1.45124 * 118.76103 * 173.74904 * 12 10 7 30 30 H 1.08996 * 109.47284 * 59.99875 * 1 2 3 31 31 H 1.09003 * 109.47568 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47171 * 300.00098 * 1 2 3 33 33 H 1.08998 * 109.47196 * 60.00267 * 3 2 1 34 34 H 1.09001 * 109.47383 * 299.99649 * 3 2 1 35 35 H 0.96994 * 120.00147 * 0.02562 * 6 4 3 36 36 H 1.08997 * 109.47452 * 176.73475 * 9 7 6 37 37 H 1.09003 * 109.46698 * 296.72965 * 9 7 6 38 38 H 1.08997 * 109.47464 * 56.72561 * 9 7 6 39 39 H 1.08998 * 109.16845 * 258.74630 * 13 12 10 40 40 H 1.09006 * 109.16791 * 17.99884 * 13 12 10 41 41 H 1.09003 * 109.45337 * 80.05142 * 14 13 12 42 42 H 1.08992 * 109.45616 * 200.00911 * 14 13 12 43 43 H 1.08995 * 109.59274 * 211.18030 * 15 14 13 44 44 H 1.08997 * 109.58818 * 331.47076 * 15 14 13 45 45 H 1.09007 * 109.47180 * 304.99220 * 19 17 16 46 46 H 1.09005 * 109.47425 * 184.99459 * 19 17 16 47 47 H 0.97007 * 119.99969 * 0.02562 * 20 19 17 48 48 H 0.96997 * 119.99985 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.45806 * 149.28397 * 29 12 10 50 50 H 1.08999 * 109.44269 * 29.31421 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 8 4.0340 0.0915 -0.0006 6 7 4.2765 2.2968 -0.0013 7 6 5.7369 2.1810 -0.0025 8 1 6.0331 1.3131 0.5868 9 6 6.2343 2.0154 -1.4398 10 6 6.3398 3.4250 0.5976 11 8 5.6558 4.4136 0.7586 12 7 7.6392 3.4391 0.9552 13 6 8.4102 2.1840 0.8777 14 6 9.8137 2.4336 0.3064 15 6 9.7300 3.4381 -0.8252 16 8 9.9161 4.7429 -0.2927 17 6 8.8272 5.4408 0.1888 18 1 8.0744 5.5254 -0.5950 19 6 9.2695 6.8392 0.6241 20 7 9.7267 7.5931 -0.5459 21 6 10.1785 8.8774 -0.3992 22 1 10.1936 9.3361 0.5784 23 6 10.6171 9.5897 -1.5069 24 7 10.5991 9.0304 -2.6983 25 14 11.2328 11.3419 -1.3069 26 1 11.1522 11.7347 0.1229 27 1 12.6432 11.4262 -1.7642 28 1 10.3932 12.2576 -2.1204 29 6 8.2271 4.6887 1.4015 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8593 3.1724 -0.0009 36 1 7.3239 1.9875 -1.4463 37 1 5.8446 1.0856 -1.8542 38 1 5.8887 2.8550 -2.0429 39 1 8.5012 1.7576 1.8767 40 1 7.8831 1.4792 0.2346 41 1 10.4610 2.8244 1.0915 42 1 10.2244 1.4967 -0.0698 43 1 10.5086 3.2281 -1.5585 44 1 8.7519 3.3714 -1.3014 45 1 10.0843 6.7552 1.3433 46 1 8.4297 7.3588 1.0856 47 1 9.7127 7.1812 -1.4241 48 1 10.9052 9.5283 -3.4724 49 1 9.0145 4.4811 2.1260 50 1 7.4584 5.3054 1.8672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200583240.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:30 Heat of formation + Delta-G solvation = -129.260913 kcal Electronic energy + Delta-G solvation = -31326.632661 eV Core-core repulsion = 26969.494745 eV Total energy + Delta-G solvation = -4357.137916 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.14204 -39.97756 -38.65958 -37.77980 -35.86280 -35.31350 -34.62556 -32.92196 -31.71813 -30.93787 -29.12119 -28.67759 -26.81398 -26.33777 -25.50211 -24.13338 -22.60609 -21.72699 -21.01975 -20.88590 -19.51234 -18.30648 -17.39094 -17.17284 -16.88144 -16.72705 -16.60674 -16.39140 -15.82965 -15.65444 -15.25757 -15.10140 -14.73459 -14.44817 -14.25318 -14.11112 -13.65472 -13.43381 -13.16705 -13.11913 -13.02639 -12.77309 -12.64403 -12.51232 -12.34355 -12.07437 -11.97588 -11.91466 -11.69110 -11.36067 -10.99666 -10.82378 -10.79952 -10.28829 -10.26705 -10.19932 -10.06964 -9.94077 -9.69344 -9.51483 -9.45450 -8.84614 -8.66762 -6.85902 -5.70635 -2.98865 2.15787 2.25244 2.29416 2.82233 3.46833 3.52014 3.54557 3.63281 3.90462 3.99706 4.32247 4.51223 4.60401 4.62868 4.65114 4.67545 4.71820 4.75422 4.88100 4.89153 4.92396 5.13531 5.17207 5.20032 5.22797 5.34052 5.39433 5.42805 5.45602 5.55569 5.62624 5.76921 5.80660 5.91506 5.93623 5.97577 6.06605 6.31230 6.37343 6.49670 6.63338 6.75941 7.01449 7.10823 7.74333 7.80049 7.85093 7.96552 8.47592 9.59219 10.17093 10.52822 11.52338 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016772 B = 0.002245 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.033957 B =12469.973565 C =13364.565389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.518 3.482 5 O -0.520 6.520 6 N -0.713 5.713 7 C 0.127 3.873 8 H 0.112 0.888 9 C -0.166 4.166 10 C 0.507 3.493 11 O -0.529 6.529 12 N -0.602 5.602 13 C 0.095 3.905 14 C -0.167 4.167 15 C 0.071 3.929 16 O -0.367 6.367 17 C 0.090 3.910 18 H 0.051 0.949 19 C 0.166 3.834 20 N -0.726 5.726 21 C -0.236 4.236 22 H 0.071 0.929 23 C -0.016 4.016 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.079 3.921 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.412 0.588 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.048 0.952 45 H 0.028 0.972 46 H 0.035 0.965 47 H 0.386 0.614 48 H 0.254 0.746 49 H 0.086 0.914 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 -20.844 6.443 26.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.304 3.696 5 O -0.395 6.395 6 N -0.369 5.369 7 C 0.019 3.981 8 H 0.130 0.870 9 C -0.224 4.224 10 C 0.293 3.707 11 O -0.405 6.405 12 N -0.335 5.335 13 C -0.027 4.027 14 C -0.205 4.205 15 C -0.006 4.006 16 O -0.285 6.285 17 C 0.029 3.971 18 H 0.069 0.931 19 C 0.038 3.962 20 N -0.370 5.370 21 C -0.368 4.368 22 H 0.089 0.911 23 C -0.211 4.211 24 N -0.581 5.581 25 Si 0.739 3.261 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.044 4.044 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.250 0.750 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.066 0.934 45 H 0.046 0.954 46 H 0.052 0.948 47 H 0.220 0.780 48 H 0.063 0.937 49 H 0.104 0.896 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.596 -21.056 6.645 26.468 hybrid contribution -0.275 1.301 -0.218 1.348 sum -14.871 -19.754 6.427 25.548 Atomic orbital electron populations 1.22856 0.80143 1.03413 1.00288 1.88003 1.19963 1.25062 1.95473 1.22202 0.91149 0.87146 1.03104 1.20248 0.88816 0.84259 0.76298 1.90732 1.74551 1.26365 1.47835 1.45664 1.05444 1.09909 1.75925 1.20791 0.81154 0.97387 0.98791 0.86996 1.22254 1.02178 1.03947 0.94018 1.20615 0.82424 0.89513 0.78122 1.90717 1.60175 1.35625 1.53954 1.47845 1.09680 1.10489 1.65460 1.22204 0.93293 0.85128 1.02043 1.22518 0.96106 1.01209 1.00693 1.22179 1.01483 0.82451 0.94478 1.86449 1.34755 1.28200 1.79094 1.22276 0.88583 0.92311 0.93883 0.93116 1.20610 0.97091 0.86688 0.91858 1.42230 1.77145 1.12845 1.04783 1.19275 1.34309 0.89420 0.93768 0.91105 1.24744 1.02396 0.98554 0.95436 1.69687 1.53585 1.36766 0.98064 0.86106 0.78152 0.84711 0.77164 1.20565 1.21916 1.21944 1.22505 0.99111 0.84522 0.98310 0.93660 0.88994 0.93695 0.89887 0.89853 0.75043 0.90447 0.90396 0.91165 0.90985 0.89406 0.89748 0.89435 0.89141 0.93372 0.95424 0.94763 0.77968 0.93657 0.89581 0.88574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.58 10.24 -55.14 -0.56 -4.15 16 3 C 0.04 0.33 6.42 36.01 0.23 0.56 16 4 C 0.52 5.43 7.87 -10.98 -0.09 5.34 16 5 O -0.52 -7.38 16.16 -14.35 -0.23 -7.61 16 6 N -0.71 -6.82 5.02 -54.93 -0.28 -7.09 16 7 C 0.13 1.27 2.11 -69.08 -0.15 1.13 16 8 H 0.11 1.08 6.44 -51.93 -0.33 0.75 16 9 C -0.17 -1.50 9.07 37.16 0.34 -1.17 16 10 C 0.51 6.22 6.92 -10.98 -0.08 6.14 16 11 O -0.53 -8.09 15.25 5.55 0.08 -8.01 16 12 N -0.60 -6.87 2.19 -172.46 -0.38 -7.25 16 13 C 0.10 0.80 5.44 -3.19 -0.02 0.78 16 14 C -0.17 -1.48 5.79 -27.18 -0.16 -1.64 16 15 C 0.07 0.87 6.37 36.42 0.23 1.10 16 16 O -0.37 -6.25 9.38 -26.53 -0.25 -6.50 16 17 C 0.09 1.53 2.68 -25.78 -0.07 1.47 16 18 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 19 C 0.17 3.45 5.92 -4.05 -0.02 3.43 16 20 N -0.73 -19.15 5.54 -59.91 -0.33 -19.48 16 21 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 22 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 23 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -28.87 13.06 55.49 0.72 -28.15 16 25 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 C 0.08 1.07 4.92 -3.83 -0.02 1.05 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.19 8.14 -51.92 -0.42 -0.23 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.41 3.60 7.71 -40.82 -0.31 3.28 16 36 H 0.08 0.63 4.89 -51.93 -0.25 0.37 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.61 4.37 -51.93 -0.23 0.38 16 41 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.58 5.89 -51.93 -0.31 0.27 16 45 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 46 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.39 10.86 7.65 -40.82 -0.31 10.55 16 48 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 50 H 0.10 1.39 7.19 -51.93 -0.37 1.02 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -37.22 399.98 -7.15 -44.37 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -8.00 Total: 8.08 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 1.07 Total: 11.96 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.26 Total: -61.97 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.96 Total: -26.26 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.22 -7.15 -44.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200583240.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.891 kcal (2) G-P(sol) polarization free energy of solvation -37.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds