Wall clock time and date at job start Wed Apr 1 2020 02:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 113.99785 * 2 1 4 4 C 1.50705 * 109.47313 * 179.97438 * 3 2 1 5 5 O 1.21284 * 119.99405 * 0.02562 * 4 3 2 6 6 N 1.34768 * 120.00177 * 180.02562 * 4 3 2 7 7 C 1.46500 * 120.00056 * 180.02562 * 6 4 3 8 8 H 1.09001 * 109.47049 * 324.99889 * 7 6 4 9 9 C 1.52997 * 109.47473 * 84.99704 * 7 6 4 10 10 C 1.50706 * 109.47187 * 205.00100 * 7 6 4 11 11 O 1.21282 * 119.99865 * 359.97438 * 10 7 6 12 12 N 1.34774 * 120.00164 * 179.97438 * 10 7 6 13 13 C 1.47508 * 118.75563 * 359.73199 * 12 10 7 14 14 C 1.53204 * 111.23875 * 221.51034 * 13 12 10 15 15 C 1.51536 * 109.42834 * 40.26383 * 14 13 12 16 16 O 1.42162 * 108.76333 * 268.50498 * 15 14 13 17 17 C 1.38015 * 119.43155 * 87.21789 * 16 15 14 18 18 H 1.09006 * 109.46981 * 56.57650 * 17 16 15 19 19 C 1.53009 * 109.46520 * 176.56591 * 17 16 15 20 20 N 1.46499 * 109.47190 * 300.01723 * 19 17 16 21 21 C 1.36928 * 119.99793 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00785 * 359.97438 * 21 20 19 23 23 C 1.38817 * 120.00021 * 179.97438 * 21 20 19 24 24 N 1.31615 * 119.99800 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 120.00174 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47240 * 59.99597 * 25 23 21 27 27 H 1.48496 * 109.47069 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47095 * 299.99537 * 25 23 21 29 29 C 1.45113 * 118.75793 * 179.97438 * 12 10 7 30 30 H 1.09001 * 109.47109 * 59.99996 * 1 2 3 31 31 H 1.08997 * 109.46916 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47452 * 299.99494 * 1 2 3 33 33 H 1.09000 * 109.46920 * 60.00504 * 3 2 1 34 34 H 1.08996 * 109.47469 * 300.00104 * 3 2 1 35 35 H 0.97001 * 120.00396 * 0.02562 * 6 4 3 36 36 H 1.09001 * 109.46832 * 60.00052 * 9 7 6 37 37 H 1.09004 * 109.47261 * 180.02562 * 9 7 6 38 38 H 1.09002 * 109.47153 * 300.00243 * 9 7 6 39 39 H 1.09003 * 109.17046 * 342.03023 * 13 12 10 40 40 H 1.09005 * 109.16859 * 101.22612 * 13 12 10 41 41 H 1.09006 * 109.60380 * 280.22778 * 14 13 12 42 42 H 1.08998 * 109.42977 * 160.19497 * 14 13 12 43 43 H 1.09001 * 109.58948 * 148.72713 * 15 14 13 44 44 H 1.08994 * 109.70794 * 28.36009 * 15 14 13 45 45 H 1.08997 * 109.46891 * 60.01423 * 19 17 16 46 46 H 1.08999 * 109.46814 * 180.02562 * 19 17 16 47 47 H 0.97006 * 120.00059 * 359.97438 * 20 19 17 48 48 H 0.97000 * 119.99915 * 180.02562 * 24 23 21 49 49 H 1.09009 * 109.46428 * 210.72976 * 29 12 10 50 50 H 1.09002 * 109.46487 * 330.70046 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 8 4.0340 0.0916 0.0006 6 7 4.2763 2.2969 0.0013 7 6 5.7368 2.1813 0.0013 8 1 6.0325 1.3131 0.5904 9 6 6.2354 2.0164 -1.4357 10 6 6.3391 3.4251 0.6025 11 8 5.6194 4.3201 0.9921 12 7 7.6776 3.5428 0.7072 13 6 8.5269 2.4350 0.2302 14 6 9.6874 2.1704 1.1947 15 6 9.1929 2.2868 2.6223 16 8 9.3772 3.6260 3.0623 17 6 8.3925 4.5617 2.8179 18 1 7.4502 4.2174 3.2442 19 6 8.7853 5.8945 3.4586 20 7 8.9404 5.7145 4.9042 21 6 9.2908 6.7776 5.6927 22 1 9.4534 7.7488 5.2491 23 6 9.4373 6.6072 7.0626 24 7 9.2388 5.4239 7.6035 25 14 9.9147 8.0577 8.1385 26 1 8.8875 9.1232 8.0173 27 1 10.0045 7.6160 9.5534 28 1 11.2311 8.5870 7.7002 29 6 8.2287 4.7521 1.2899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.6885 1.8463 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8592 3.1726 0.0017 36 1 5.9397 2.8846 -2.0247 37 1 7.3220 1.9299 -1.4356 38 1 5.7998 1.1168 -1.8705 39 1 7.9220 1.5325 0.1423 40 1 8.9314 2.6903 -0.7493 41 1 10.4787 2.9005 1.0238 42 1 10.0772 1.1665 1.0262 43 1 9.7604 1.6108 3.2619 44 1 8.1346 2.0299 2.6669 45 1 9.7275 6.2389 3.0322 46 1 8.0075 6.6334 3.2659 47 1 8.7941 4.8423 5.3028 48 1 9.3408 5.3049 8.5607 49 1 9.2012 4.9600 0.8434 50 1 7.5551 5.5874 1.0980 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200583241.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:34 Heat of formation + Delta-G solvation = -124.201894 kcal Electronic energy + Delta-G solvation = -31316.345350 eV Core-core repulsion = 26959.426809 eV Total energy + Delta-G solvation = -4356.918541 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.15146 -39.95992 -38.64607 -37.74852 -35.94849 -35.27931 -34.60545 -32.90484 -31.77300 -30.91717 -29.13854 -28.59757 -26.70687 -26.29871 -25.65065 -24.12005 -22.55400 -21.69301 -21.02708 -20.79968 -19.68416 -18.25475 -17.36551 -17.14550 -16.84257 -16.68381 -16.56490 -16.36000 -16.05541 -15.54870 -15.19979 -15.04355 -14.66481 -14.38723 -14.34097 -13.96711 -13.81360 -13.52115 -13.23498 -13.15655 -12.98252 -12.71262 -12.60722 -12.58759 -12.20681 -11.99338 -11.94626 -11.87158 -11.67849 -11.36560 -10.98713 -10.80941 -10.75225 -10.27840 -10.23426 -10.17722 -10.09207 -9.95088 -9.66370 -9.50783 -9.42930 -8.81515 -8.66410 -6.83562 -5.67923 -2.96231 2.17552 2.25854 2.33280 2.81775 3.49173 3.52754 3.54347 3.65351 3.92173 3.99284 4.33934 4.51827 4.60436 4.61166 4.66197 4.68407 4.71346 4.77074 4.88688 4.90768 4.96036 5.14386 5.18297 5.22382 5.26262 5.31521 5.35821 5.41770 5.45045 5.56405 5.64530 5.72065 5.81008 5.91953 5.94725 5.97039 6.08371 6.34060 6.37395 6.52661 6.65033 6.77956 7.01346 7.11888 7.74968 7.81209 7.86957 7.99585 8.50329 9.61698 10.20196 10.56180 11.54919 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013032 B = 0.002401 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.029347 B =11658.492571 C =12867.765864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.519 3.481 5 O -0.519 6.519 6 N -0.712 5.712 7 C 0.127 3.873 8 H 0.115 0.885 9 C -0.172 4.172 10 C 0.505 3.495 11 O -0.528 6.528 12 N -0.601 5.601 13 C 0.098 3.902 14 C -0.168 4.168 15 C 0.072 3.928 16 O -0.366 6.366 17 C 0.089 3.911 18 H 0.051 0.949 19 C 0.167 3.833 20 N -0.725 5.725 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.932 5.932 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 C 0.080 3.920 30 H 0.044 0.956 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.411 0.589 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.045 0.955 45 H 0.026 0.974 46 H 0.034 0.966 47 H 0.387 0.613 48 H 0.255 0.745 49 H 0.086 0.914 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.869 -10.437 -23.189 27.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.304 3.696 5 O -0.394 6.394 6 N -0.368 5.368 7 C 0.019 3.981 8 H 0.133 0.867 9 C -0.231 4.231 10 C 0.292 3.708 11 O -0.404 6.404 12 N -0.334 5.334 13 C -0.024 4.024 14 C -0.207 4.207 15 C -0.005 4.005 16 O -0.284 6.284 17 C 0.029 3.971 18 H 0.069 0.931 19 C 0.038 3.962 20 N -0.369 5.369 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.581 5.581 25 Si 0.739 3.261 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.043 4.043 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.248 0.752 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.052 0.948 47 H 0.221 0.779 48 H 0.064 0.936 49 H 0.104 0.896 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.549 -10.717 -22.834 27.341 hybrid contribution -0.403 1.037 0.582 1.255 sum -10.952 -9.680 -22.252 26.624 Atomic orbital electron populations 1.22856 0.80141 1.03428 1.00268 1.88007 1.19966 1.25036 1.95468 1.22197 0.91126 0.87177 1.03073 1.20248 0.88835 0.84253 0.76270 1.90738 1.74533 1.26365 1.47738 1.45601 1.05353 1.09842 1.75996 1.20740 0.81233 0.97511 0.98625 0.86743 1.22436 1.02851 1.03574 0.94189 1.20620 0.82761 0.88488 0.78956 1.90729 1.59784 1.41249 1.48663 1.47841 1.05421 1.18957 1.61143 1.22256 0.93188 0.89328 0.97678 1.22481 0.98293 1.03590 0.96295 1.22131 1.00136 0.84574 0.93611 1.86456 1.44869 1.17479 1.79595 1.22283 0.91509 0.91136 0.92216 0.93139 1.20610 0.98085 0.90779 0.86701 1.42198 1.83710 1.10887 1.00144 1.19182 1.38782 0.89927 0.89046 0.91248 1.24743 1.02809 0.96763 0.96762 1.69668 1.56122 1.21357 1.10951 0.86254 0.78310 0.81783 0.79748 1.21327 1.21744 1.21300 1.22501 1.00027 0.86717 0.95048 0.93759 0.88987 0.93603 0.89759 0.89991 0.75186 0.91630 0.89804 0.90646 0.89357 0.90830 0.89713 0.89400 0.89113 0.93637 0.95577 0.94848 0.77858 0.93550 0.89553 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.37 -3.76 10.24 -55.14 -0.56 -4.33 16 3 C 0.04 0.35 6.42 36.01 0.23 0.58 16 4 C 0.52 5.64 7.87 -10.99 -0.09 5.55 16 5 O -0.52 -7.65 16.16 -14.36 -0.23 -7.88 16 6 N -0.71 -6.85 4.95 -54.93 -0.27 -7.12 16 7 C 0.13 1.25 2.16 -69.08 -0.15 1.10 16 8 H 0.11 1.21 6.83 -51.93 -0.35 0.85 16 9 C -0.17 -1.27 9.00 37.16 0.33 -0.94 16 10 C 0.51 6.14 7.10 -10.98 -0.08 6.06 16 11 O -0.53 -8.11 15.27 5.56 0.08 -8.02 16 12 N -0.60 -6.76 2.20 -172.67 -0.38 -7.14 16 13 C 0.10 0.79 4.43 -3.38 -0.01 0.77 16 14 C -0.17 -1.54 5.78 -27.37 -0.16 -1.70 16 15 C 0.07 0.95 6.37 36.42 0.23 1.18 16 16 O -0.37 -6.46 9.18 -26.54 -0.24 -6.70 16 17 C 0.09 1.56 2.74 -25.75 -0.07 1.49 16 18 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 19 C 0.17 3.52 5.95 -4.04 -0.02 3.49 16 20 N -0.73 -19.43 5.49 -59.91 -0.33 -19.76 16 21 C -0.24 -6.92 9.99 -15.06 -0.15 -7.07 16 22 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 23 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 24 N -0.93 -29.22 13.06 55.49 0.72 -28.50 16 25 Si 0.91 22.99 29.55 -169.99 -5.02 17.97 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 C 0.08 1.08 4.87 -3.81 -0.02 1.06 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.41 3.50 7.79 -40.82 -0.32 3.18 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.48 4.63 -51.93 -0.24 0.24 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.60 4.97 -51.93 -0.26 0.34 16 40 H 0.07 0.45 7.54 -51.93 -0.39 0.06 16 41 H 0.08 0.85 8.01 -51.93 -0.42 0.43 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.60 7.41 -51.93 -0.38 0.22 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.39 11.10 7.53 -40.82 -0.31 10.79 16 48 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 49 H 0.09 1.04 8.12 -51.92 -0.42 0.62 16 50 H 0.09 1.34 7.27 -51.93 -0.38 0.97 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -37.91 400.55 -7.22 -45.13 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -8.09 Total: 7.96 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 1.06 Total: 12.35 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.26 Total: -62.52 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.96 Total: -26.94 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.91 -7.22 -45.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200583241.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.070 kcal (2) G-P(sol) polarization free energy of solvation -37.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds