Wall clock time and date at job start Wed Apr 1 2020 02:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99572 * 2 1 4 4 C 1.50708 * 109.46833 * 180.02562 * 3 2 1 5 5 O 1.21283 * 119.99726 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99992 * 179.97438 * 4 3 2 7 7 C 1.46495 * 120.00208 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.46964 * 35.00362 * 7 6 4 9 9 C 1.52994 * 109.47536 * 275.00651 * 7 6 4 10 10 C 1.50696 * 109.47492 * 155.00156 * 7 6 4 11 11 O 1.21284 * 119.99783 * 0.02562 * 10 7 6 12 12 N 1.34776 * 120.00407 * 180.02562 * 10 7 6 13 13 C 1.47503 * 118.75472 * 359.73420 * 12 10 7 14 14 C 1.53574 * 111.03205 * 138.65432 * 13 12 10 15 15 C 1.51533 * 109.57401 * 320.01721 * 14 13 12 16 16 O 1.42151 * 108.76417 * 91.39956 * 15 14 13 17 17 C 1.38015 * 119.43523 * 272.77582 * 16 15 14 18 18 H 1.09003 * 109.47070 * 303.42523 * 17 16 15 19 19 C 1.53002 * 109.46921 * 183.43198 * 17 16 15 20 20 N 1.46499 * 109.47203 * 64.99324 * 19 17 16 21 21 C 1.36932 * 120.00494 * 180.02562 * 20 19 17 22 22 H 1.07997 * 119.99758 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00195 * 179.97438 * 21 20 19 24 24 N 1.31624 * 119.99596 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00129 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.47252 * 90.00095 * 25 23 21 27 27 H 1.48500 * 109.47139 * 209.99966 * 25 23 21 28 28 H 1.48506 * 109.46955 * 329.99854 * 25 23 21 29 29 C 1.45126 * 118.75873 * 180.02562 * 12 10 7 30 30 H 1.09000 * 109.46991 * 299.99860 * 1 2 3 31 31 H 1.09000 * 109.47248 * 59.99760 * 1 2 3 32 32 H 1.09001 * 109.46954 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.47107 * 60.00648 * 3 2 1 34 34 H 1.09001 * 109.47081 * 300.00149 * 3 2 1 35 35 H 0.97010 * 120.00147 * 0.02562 * 6 4 3 36 36 H 1.08999 * 109.47232 * 59.99739 * 9 7 6 37 37 H 1.08997 * 109.47699 * 179.97438 * 9 7 6 38 38 H 1.09003 * 109.46758 * 299.99837 * 9 7 6 39 39 H 1.09006 * 109.16761 * 259.04873 * 13 12 10 40 40 H 1.08997 * 109.16592 * 18.25156 * 13 12 10 41 41 H 1.09002 * 109.45191 * 199.98442 * 14 13 12 42 42 H 1.08998 * 109.43470 * 80.04041 * 14 13 12 43 43 H 1.08994 * 109.59368 * 331.60807 * 15 14 13 44 44 H 1.09002 * 109.58351 * 211.17723 * 15 14 13 45 45 H 1.09001 * 109.46805 * 184.98525 * 19 17 16 46 46 H 1.08997 * 109.47029 * 304.99195 * 19 17 16 47 47 H 0.97002 * 119.99794 * 359.97438 * 20 19 17 48 48 H 0.97004 * 119.99154 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.45962 * 29.02355 * 29 12 10 50 50 H 1.08996 * 109.45920 * 149.00240 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1866 -0.0006 5 8 4.0341 0.0916 -0.0015 6 7 4.2764 2.2969 -0.0013 7 6 5.7368 2.1813 -0.0013 8 1 6.0325 1.3131 -0.5904 9 6 6.2354 2.0163 1.4356 10 6 6.3392 3.4250 -0.6024 11 8 5.6194 4.3201 -0.9920 12 7 7.6777 3.5427 -0.7071 13 6 8.5273 2.4400 -0.2192 14 6 9.6922 2.1735 -1.1838 15 6 9.2033 2.2863 -2.6137 16 8 9.3867 3.6250 -3.0553 17 6 8.3992 4.5592 -2.8168 18 1 7.4594 4.2123 -3.2464 19 6 8.7920 5.8916 -3.4582 20 7 8.8369 5.7380 -4.9145 21 6 9.1684 6.8053 -5.7057 22 1 9.3965 7.7605 -5.2561 23 6 9.2114 6.6597 -7.0855 24 7 9.5296 7.6858 -7.8459 25 14 8.8176 5.0075 -7.8630 26 1 7.3625 4.9292 -8.1491 27 1 9.5796 4.8621 -9.1293 28 1 9.1978 3.9176 -6.9286 29 6 8.2288 4.7522 -1.2898 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8592 3.1727 -0.0009 36 1 5.7998 1.1167 1.8704 37 1 7.3220 1.9298 1.4356 38 1 5.9397 2.8845 2.0247 39 1 8.9269 2.7026 0.7604 40 1 7.9241 1.5368 -0.1283 41 1 10.0836 1.1707 -1.0120 42 1 10.4810 2.9056 -1.0110 43 1 8.1454 2.0279 -2.6597 44 1 9.7747 1.6102 -3.2496 45 1 8.0566 6.6520 -3.1956 46 1 9.7738 6.1945 -3.0944 47 1 8.6324 4.8801 -5.3182 48 1 9.5593 7.5840 -8.8101 49 1 7.5528 5.5864 -1.1020 50 1 9.1990 4.9625 -0.8398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200583242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:25:37 Heat of formation + Delta-G solvation = -120.471884 kcal Electronic energy + Delta-G solvation = -31431.393335 eV Core-core repulsion = 27074.636540 eV Total energy + Delta-G solvation = -4356.756796 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.23352 -40.03294 -38.76525 -37.79869 -36.05690 -35.34805 -34.81368 -32.97103 -31.83804 -31.17480 -29.30755 -28.81153 -26.85409 -26.36780 -25.82685 -24.16946 -22.31725 -21.75588 -21.12917 -20.89223 -19.75895 -18.32447 -17.68958 -17.40533 -16.90906 -16.72940 -16.68263 -16.47564 -16.13709 -15.65031 -15.27089 -15.08752 -14.74054 -14.44466 -14.35334 -14.08794 -13.89867 -13.60489 -13.47073 -13.20389 -12.99294 -12.72925 -12.66932 -12.64557 -12.32361 -12.08467 -12.05236 -11.91890 -11.90010 -11.49202 -11.22319 -10.95089 -10.82748 -10.40657 -10.27520 -10.23137 -10.11841 -10.02525 -9.59505 -9.56228 -9.53511 -8.85594 -8.78319 -7.16839 -5.71292 -3.05828 2.11663 2.18781 2.26781 2.74200 3.43924 3.49140 3.50511 3.60678 3.77871 3.90372 4.28467 4.41697 4.53524 4.55088 4.63172 4.64003 4.66092 4.71757 4.77595 4.87234 4.92261 5.00645 5.08040 5.13331 5.19831 5.22844 5.28857 5.30634 5.34305 5.44440 5.58781 5.66210 5.67677 5.75055 5.83598 5.88037 5.94212 5.97123 6.27092 6.48307 6.53943 6.65871 6.92734 7.06220 7.73870 7.80589 7.82120 8.04208 8.47691 9.27139 9.99779 10.20293 11.47094 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011944 B = 0.002655 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2343.635137 B =10544.607623 C =11773.033842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.519 3.481 5 O -0.520 6.520 6 N -0.712 5.712 7 C 0.127 3.873 8 H 0.115 0.885 9 C -0.173 4.173 10 C 0.505 3.495 11 O -0.527 6.527 12 N -0.602 5.602 13 C 0.097 3.903 14 C -0.168 4.168 15 C 0.071 3.929 16 O -0.371 6.371 17 C 0.084 3.916 18 H 0.051 0.949 19 C 0.171 3.829 20 N -0.750 5.750 21 C -0.241 4.241 22 H 0.090 0.910 23 C 0.004 3.996 24 N -0.935 5.935 25 Si 0.883 3.117 26 H -0.285 1.285 27 H -0.291 1.291 28 H -0.274 1.274 29 C 0.081 3.919 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.412 0.588 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.044 0.956 46 H 0.036 0.964 47 H 0.364 0.636 48 H 0.259 0.741 49 H 0.097 0.903 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.397 -15.499 24.106 30.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.304 3.696 5 O -0.394 6.394 6 N -0.368 5.368 7 C 0.019 3.981 8 H 0.132 0.868 9 C -0.231 4.231 10 C 0.291 3.709 11 O -0.403 6.403 12 N -0.335 5.335 13 C -0.025 4.025 14 C -0.206 4.206 15 C -0.006 4.006 16 O -0.289 6.289 17 C 0.024 3.976 18 H 0.069 0.931 19 C 0.043 3.957 20 N -0.396 5.396 21 C -0.371 4.371 22 H 0.108 0.892 23 C -0.192 4.192 24 N -0.584 5.584 25 Si 0.713 3.287 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.200 1.200 29 C -0.042 4.042 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.249 0.751 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.064 0.936 44 H 0.109 0.891 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.196 0.804 48 H 0.069 0.931 49 H 0.115 0.885 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -11.056 -15.706 23.744 30.540 hybrid contribution -0.870 -0.569 -0.498 1.153 sum -11.925 -16.275 23.245 30.781 Atomic orbital electron populations 1.22860 0.80104 1.03444 1.00291 1.88007 1.19997 1.25016 1.95474 1.22197 0.91083 0.87200 1.03101 1.20257 0.88854 0.84236 0.76239 1.90737 1.74539 1.26374 1.47748 1.45607 1.05327 1.09874 1.76020 1.20733 0.81280 0.97437 0.98653 0.86787 1.22447 1.02860 1.03645 0.94168 1.20637 0.82754 0.88513 0.78952 1.90737 1.59776 1.41194 1.48582 1.47845 1.05430 1.19204 1.61008 1.22346 0.93106 0.89459 0.97598 1.22531 0.98341 1.03671 0.96077 1.22148 1.00212 0.84383 0.93811 1.86436 1.44870 1.17750 1.79824 1.22352 0.91357 0.91103 0.92800 0.93107 1.20587 0.99129 0.90860 0.85120 1.42572 1.85214 1.11043 1.00726 1.19050 1.38837 0.90827 0.88360 0.89174 1.24647 1.01685 0.96924 0.95930 1.69710 1.55171 1.29340 1.04138 0.86545 0.78008 0.85218 0.78890 1.21208 1.21766 1.20027 1.22472 1.00259 0.86811 0.94665 0.93719 0.93608 0.88975 0.89952 0.89760 0.75147 0.90615 0.89783 0.91571 0.90681 0.89305 0.89354 0.89632 0.93559 0.89136 0.93863 0.94599 0.80359 0.93130 0.88467 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.65 10.24 -55.14 -0.56 -4.21 16 3 C 0.04 0.34 6.42 36.01 0.23 0.57 16 4 C 0.52 5.42 7.87 -10.98 -0.09 5.33 16 5 O -0.52 -7.43 16.16 -14.36 -0.23 -7.66 16 6 N -0.71 -6.51 4.95 -54.94 -0.27 -6.78 16 7 C 0.13 1.18 2.16 -69.09 -0.15 1.03 16 8 H 0.11 1.13 6.85 -51.93 -0.36 0.77 16 9 C -0.17 -1.19 9.00 37.15 0.33 -0.86 16 10 C 0.51 5.79 7.11 -10.99 -0.08 5.72 16 11 O -0.53 -7.75 15.26 5.55 0.08 -7.67 16 12 N -0.60 -6.30 2.19 -172.44 -0.38 -6.68 16 13 C 0.10 0.71 4.46 -3.20 -0.01 0.69 16 14 C -0.17 -1.38 5.79 -27.18 -0.16 -1.53 16 15 C 0.07 0.85 6.37 36.42 0.23 1.08 16 16 O -0.37 -6.03 9.38 -26.54 -0.25 -6.28 16 17 C 0.08 1.38 2.68 -25.75 -0.07 1.31 16 18 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 19 C 0.17 3.42 5.92 -4.04 -0.02 3.40 16 20 N -0.75 -18.82 5.34 -59.91 -0.32 -19.14 16 21 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 22 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 23 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 24 N -0.94 -30.09 13.97 55.49 0.78 -29.31 16 25 Si 0.88 23.04 27.73 -169.99 -4.71 18.33 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 28 H -0.27 -6.85 6.52 56.52 0.37 -6.49 16 29 C 0.08 1.02 4.87 -3.80 -0.02 1.01 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.41 3.32 7.79 -40.82 -0.32 3.00 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.44 4.59 -51.93 -0.24 0.20 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.41 7.55 -51.93 -0.39 0.02 16 40 H 0.09 0.53 4.96 -51.93 -0.26 0.28 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.77 8.01 -51.93 -0.42 0.36 16 43 H 0.05 0.56 7.40 -51.93 -0.38 0.17 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.36 9.13 5.52 -40.82 -0.23 8.90 16 48 H 0.26 7.91 8.31 -40.82 -0.34 7.57 16 49 H 0.10 1.30 7.26 -51.93 -0.38 0.92 16 50 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 LS Contribution 397.71 15.07 5.99 5.99 Total: -1.00 -38.60 397.71 -6.87 -45.46 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -8.05 Total: 6.13 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 1.06 Total: 11.81 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: -0.19 Total: -61.91 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.96 Total: -25.82 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.71 Total: 18.33 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.60 -6.87 -45.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200583242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.009 kcal (2) G-P(sol) polarization free energy of solvation -38.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds