Wall clock time and date at job start Wed Apr 1 2020 02:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42900 * 114.00097 * 2 1 4 4 C 1.50700 * 109.47143 * 179.97438 * 3 2 1 5 5 O 1.21288 * 120.00032 * 0.02562 * 4 3 2 6 6 N 1.34778 * 120.00366 * 179.97438 * 4 3 2 7 7 C 1.46501 * 119.99457 * 0.02562 * 6 4 3 8 8 C 1.46495 * 120.00220 * 180.02562 * 6 4 3 9 9 C 1.50703 * 109.47103 * 90.00297 * 8 6 4 10 10 O 1.21275 * 119.99991 * 359.97438 * 9 8 6 11 11 N 1.34770 * 119.99978 * 179.97438 * 9 8 6 12 12 C 1.47509 * 118.75751 * 0.02562 * 11 9 8 13 13 C 1.53582 * 111.02632 * 221.62539 * 12 11 9 14 14 C 1.51532 * 109.58168 * 39.97857 * 13 12 11 15 15 O 1.42159 * 108.76184 * 268.60204 * 14 13 12 16 16 C 1.38014 * 119.43761 * 87.22179 * 15 14 13 17 17 H 1.09002 * 109.46972 * 56.57667 * 16 15 14 18 18 C 1.53006 * 109.46968 * 176.57389 * 16 15 14 19 19 N 1.46501 * 109.46935 * 300.00487 * 18 16 15 20 20 C 1.36933 * 119.99817 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00077 * 0.02562 * 20 19 18 22 22 C 1.38817 * 120.00184 * 179.97438 * 20 19 18 23 23 N 1.31621 * 119.99533 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00147 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47229 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.47175 * 120.00571 * 24 22 20 27 27 H 1.48504 * 109.47269 * 240.00118 * 24 22 20 28 28 C 1.45124 * 118.76047 * 180.02562 * 11 9 8 29 29 H 1.09008 * 109.46883 * 59.99415 * 1 2 3 30 30 H 1.08992 * 109.47154 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46949 * 300.00312 * 1 2 3 32 32 H 1.09000 * 109.47003 * 60.00338 * 3 2 1 33 33 H 1.09000 * 109.47353 * 299.99969 * 3 2 1 34 34 H 1.09002 * 109.47002 * 269.99337 * 7 6 4 35 35 H 1.08998 * 109.47748 * 29.99406 * 7 6 4 36 36 H 1.09001 * 109.47024 * 150.00221 * 7 6 4 37 37 H 1.08997 * 109.47452 * 330.00079 * 8 6 4 38 38 H 1.09001 * 109.46961 * 210.00390 * 8 6 4 39 39 H 1.09000 * 109.16886 * 101.22941 * 12 11 9 40 40 H 1.08996 * 109.13025 * 341.99504 * 12 11 9 41 41 H 1.09004 * 109.45107 * 279.94683 * 13 12 11 42 42 H 1.09004 * 109.43440 * 160.00223 * 13 12 11 43 43 H 1.08992 * 109.59220 * 148.81559 * 14 13 12 44 44 H 1.09005 * 109.58794 * 28.37902 * 14 13 12 45 45 H 1.09002 * 109.47046 * 60.00324 * 18 16 15 46 46 H 1.09001 * 109.47183 * 180.02562 * 18 16 15 47 47 H 0.96996 * 120.00097 * 359.97438 * 19 18 16 48 48 H 0.96998 * 119.99666 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.45582 * 330.68899 * 28 11 9 50 50 H 1.09000 * 109.46145 * 210.73726 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 8 4.0341 0.0914 0.0006 6 7 4.2765 2.2967 0.0002 7 6 3.6465 3.6193 -0.0003 8 6 5.7369 2.1810 0.0003 9 6 6.2377 2.1409 -1.4205 10 8 5.4520 2.2024 -2.3424 11 7 7.5586 2.0366 -1.6668 12 6 8.4897 1.9632 -0.5250 13 6 9.7393 2.8198 -0.7770 14 6 9.3386 4.1166 -1.4508 15 8 9.4028 3.9387 -2.8597 16 6 8.3046 3.4410 -3.5313 17 1 7.4399 4.0745 -3.3334 18 6 8.5907 3.4235 -5.0343 19 7 8.8683 4.7864 -5.4944 20 6 9.1543 5.0188 -6.8132 21 1 9.1748 4.1974 -7.5142 22 6 9.4168 6.3102 -7.2494 23 7 9.3912 7.3112 -6.3952 24 14 9.8076 6.6272 -9.0483 25 1 9.7740 5.3444 -9.7956 26 1 8.7998 7.5576 -9.6173 27 1 11.1592 7.2317 -9.1621 28 6 8.0113 2.0009 -3.0451 29 1 -0.3633 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.4903 3.9470 -1.0281 35 1 2.6867 3.5649 0.5135 36 1 4.2937 4.3303 0.5133 37 1 6.0289 1.2653 0.5144 38 1 6.1694 3.0397 0.5139 39 1 8.7909 0.9264 -0.3749 40 1 7.9845 2.3224 0.3715 41 1 10.4295 2.2744 -1.4208 42 1 10.2260 3.0397 0.1732 43 1 10.0225 4.9106 -1.1512 44 1 8.3210 4.3794 -1.1617 45 1 9.4554 2.7900 -5.2321 46 1 7.7232 3.0308 -5.5647 47 1 8.8494 5.5241 -4.8649 48 1 9.5750 8.2136 -6.6999 49 1 7.2364 1.5573 -3.6704 50 1 8.9196 1.4023 -3.1137 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200642394.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:15 Heat of formation + Delta-G solvation = -118.079965 kcal Electronic energy + Delta-G solvation = -31417.750226 eV Core-core repulsion = 27061.097152 eV Total energy + Delta-G solvation = -4356.653074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.90296 -39.96883 -38.47159 -37.67561 -35.77521 -35.61542 -34.55915 -32.85952 -30.96479 -30.73326 -29.08358 -28.06675 -26.91958 -26.58645 -25.75520 -24.69970 -22.69396 -21.74160 -20.93007 -20.24484 -18.96971 -17.82729 -17.71172 -17.19146 -17.04111 -16.60689 -16.53563 -16.36166 -15.83031 -15.66642 -15.25214 -14.79992 -14.72113 -14.36427 -14.12650 -13.88874 -13.61700 -13.38167 -13.25886 -13.08097 -12.99694 -12.85419 -12.68275 -12.57492 -12.41039 -12.16726 -11.92651 -11.80867 -11.64530 -11.36538 -10.98189 -10.79975 -10.77359 -10.27560 -10.20177 -10.15302 -10.06450 -9.93732 -9.66245 -9.39043 -8.98505 -8.81567 -8.55364 -6.82406 -5.68006 -2.95721 2.12946 2.37542 2.50383 2.92034 3.48608 3.52017 3.53899 3.56438 3.96515 4.19088 4.25946 4.53542 4.55407 4.62891 4.67220 4.70646 4.75747 4.80411 4.91679 4.94275 4.98184 4.98587 5.09363 5.26045 5.28693 5.30555 5.34500 5.40483 5.43903 5.50662 5.61521 5.65590 5.83592 5.89654 5.97202 6.01876 6.10920 6.35897 6.49710 6.55874 6.69074 6.81201 6.92888 7.18112 7.77106 7.82647 8.01783 8.07766 8.50581 9.62172 10.20701 10.57036 11.55105 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013581 B = 0.002449 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.223791 B =11432.000646 C =12631.450888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.047 3.953 4 C 0.522 3.478 5 O -0.516 6.516 6 N -0.601 5.601 7 C 0.075 3.925 8 C 0.099 3.901 9 C 0.491 3.509 10 O -0.522 6.522 11 N -0.608 5.608 12 C 0.105 3.895 13 C -0.167 4.167 14 C 0.075 3.925 15 O -0.367 6.367 16 C 0.091 3.909 17 H 0.050 0.950 18 C 0.166 3.834 19 N -0.725 5.725 20 C -0.235 4.235 21 H 0.071 0.929 22 C -0.016 4.016 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C 0.081 3.919 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.044 0.956 45 H 0.027 0.973 46 H 0.034 0.966 47 H 0.387 0.613 48 H 0.253 0.747 49 H 0.092 0.908 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.051 -10.173 22.680 27.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.032 4.032 4 C 0.309 3.691 5 O -0.390 6.390 6 N -0.336 5.336 7 C -0.068 4.068 8 C -0.027 4.027 9 C 0.277 3.723 10 O -0.397 6.397 11 N -0.343 5.343 12 C -0.018 4.018 13 C -0.206 4.206 14 C -0.002 4.002 15 O -0.285 6.285 16 C 0.031 3.969 17 H 0.068 0.932 18 C 0.037 3.963 19 N -0.369 5.369 20 C -0.366 4.366 21 H 0.089 0.911 22 C -0.212 4.212 23 N -0.582 5.582 24 Si 0.739 3.261 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.219 1.219 28 C -0.042 4.042 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.104 0.896 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.052 0.948 47 H 0.221 0.779 48 H 0.063 0.937 49 H 0.111 0.889 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -11.915 -10.923 21.914 27.231 hybrid contribution -0.143 0.779 -0.571 0.976 sum -12.057 -10.143 21.344 26.530 Atomic orbital electron populations 1.22849 0.80210 1.03413 1.00187 1.88013 1.19916 1.25194 1.95426 1.22251 0.91285 0.87038 1.02673 1.20228 0.88855 0.83952 0.76063 1.90729 1.74452 1.26167 1.47633 1.47320 1.05146 1.06823 1.74276 1.21946 0.98542 0.83188 1.03129 1.21405 0.80977 1.05436 0.94886 1.21195 0.82409 0.76644 0.92074 1.90725 1.54738 1.48292 1.45963 1.47946 1.05958 1.73207 1.07174 1.22023 0.91106 1.00750 0.87907 1.22524 0.97495 0.98061 1.02470 1.22104 1.00639 0.95851 0.81642 1.86449 1.39177 1.83918 1.18949 1.22249 0.88877 0.91949 0.93849 0.93233 1.20620 0.98037 0.89983 0.87615 1.42212 1.84567 1.02412 1.07751 1.19290 1.39085 0.92788 0.85438 0.91140 1.24736 1.02995 0.95704 0.97762 1.69691 1.56495 0.98957 1.33049 0.86105 0.77512 0.77660 0.84872 1.20572 1.21967 1.21932 1.22423 1.01125 0.99233 0.81435 0.93634 0.89009 0.93810 0.90180 0.89789 0.91421 0.90756 0.90474 0.86815 0.87297 0.91150 0.90218 0.89805 0.89596 0.89246 0.93726 0.95551 0.94814 0.77904 0.93709 0.88944 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -4.14 10.24 -55.14 -0.56 -4.71 16 3 C 0.05 0.42 4.97 36.01 0.18 0.60 16 4 C 0.52 6.44 7.75 -10.98 -0.09 6.35 16 5 O -0.52 -8.58 16.08 -14.36 -0.23 -8.81 16 6 N -0.60 -6.02 2.36 -182.95 -0.43 -6.45 16 7 C 0.07 0.48 10.28 59.85 0.62 1.10 16 8 C 0.10 0.96 4.27 -5.20 -0.02 0.94 16 9 C 0.49 6.71 7.70 -10.99 -0.08 6.63 16 10 O -0.52 -9.37 15.86 5.56 0.09 -9.28 16 11 N -0.61 -7.60 2.19 -172.47 -0.38 -7.97 16 12 C 0.10 0.89 6.00 -3.19 -0.02 0.87 16 13 C -0.17 -1.52 5.79 -27.17 -0.16 -1.68 16 14 C 0.07 0.94 6.37 36.41 0.23 1.17 16 15 O -0.37 -6.51 9.18 -26.53 -0.24 -6.75 16 16 C 0.09 1.64 2.73 -25.78 -0.07 1.57 16 17 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 18 C 0.17 3.60 5.95 -4.04 -0.02 3.58 16 19 N -0.73 -19.58 5.49 -59.90 -0.33 -19.91 16 20 C -0.23 -6.87 9.99 -15.06 -0.15 -7.02 16 21 H 0.07 2.00 7.83 -52.49 -0.41 1.58 16 22 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 23 N -0.93 -29.16 13.06 55.49 0.72 -28.43 16 24 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 C 0.08 1.21 4.86 -3.83 -0.02 1.20 16 29 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.44 7.40 -51.93 -0.38 0.06 16 33 H 0.08 0.64 8.11 -51.93 -0.42 0.22 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.28 6.44 -51.93 -0.33 -0.06 16 36 H 0.08 0.36 7.89 -51.93 -0.41 -0.05 16 37 H 0.11 1.07 7.32 -51.93 -0.38 0.69 16 38 H 0.11 0.66 7.16 -51.93 -0.37 0.29 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.46 5.87 -51.93 -0.30 0.15 16 41 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 42 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.04 0.54 7.40 -51.93 -0.38 0.16 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.39 11.08 7.53 -40.82 -0.31 10.77 16 48 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.09 1.52 7.27 -51.93 -0.38 1.14 16 50 H 0.08 1.14 8.11 -51.93 -0.42 0.72 16 LS Contribution 404.59 15.07 6.10 6.10 Total: -1.00 -40.43 404.59 -7.17 -47.60 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -8.29 Total: 4.51 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: 1.41 Total: 16.02 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: -0.41 Total: -62.76 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.95 Total: -29.55 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -40.43 -7.17 -47.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200642394.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.479 kcal (2) G-P(sol) polarization free energy of solvation -40.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds