Wall clock time and date at job start Wed Apr 1 2020 02:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99697 * 2 1 4 4 C 1.53000 * 109.46848 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47398 * 54.99843 * 4 3 2 6 6 O 1.42903 * 109.46726 * 294.99599 * 4 3 2 7 7 C 1.42909 * 113.99516 * 150.00349 * 6 4 3 8 8 C 1.50699 * 109.47083 * 174.99789 * 4 3 2 9 9 O 1.21286 * 119.99722 * 114.99713 * 8 4 3 10 10 N 1.34777 * 120.00178 * 294.99658 * 8 4 3 11 11 C 1.46500 * 120.00097 * 179.97438 * 10 8 4 12 12 H 1.08994 * 110.27510 * 32.91340 * 11 10 8 13 13 C 1.53996 * 110.30954 * 270.71812 * 11 10 8 14 14 N 1.47894 * 107.05784 * 242.31077 * 13 11 10 15 15 C 1.46901 * 111.00185 * 214.15877 * 14 13 11 16 16 C 1.50709 * 109.46655 * 307.39138 * 15 14 13 17 17 O 1.21290 * 120.00100 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99853 * 179.97438 * 16 15 14 19 19 C 1.37099 * 119.99906 * 180.02562 * 18 16 15 20 20 H 1.07996 * 119.99844 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99931 * 180.02562 * 19 18 16 22 22 N 1.31418 * 119.99880 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00054 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47095 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46894 * 119.99939 * 23 21 19 26 26 H 1.48499 * 109.47318 * 239.99962 * 23 21 19 27 27 C 1.48534 * 105.82433 * 334.66631 * 14 13 11 28 28 C 1.54594 * 110.30937 * 155.00363 * 11 10 8 29 29 H 1.08998 * 110.72351 * 22.33299 * 28 11 10 30 30 C 1.53005 * 110.72098 * 259.23234 * 28 11 10 31 31 H 1.08995 * 109.46929 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46836 * 299.99784 * 1 2 3 33 33 H 1.08998 * 109.47394 * 60.00226 * 1 2 3 34 34 H 1.08990 * 109.47416 * 60.00374 * 3 2 1 35 35 H 1.09001 * 109.47100 * 300.00056 * 3 2 1 36 36 H 1.08996 * 109.46835 * 299.99639 * 7 6 4 37 37 H 1.08994 * 109.47272 * 60.00221 * 7 6 4 38 38 H 1.09002 * 109.46835 * 179.97438 * 7 6 4 39 39 H 0.97004 * 119.99587 * 0.02562 * 10 8 4 40 40 H 1.09004 * 109.91578 * 1.65930 * 13 11 10 41 41 H 1.08998 * 109.91669 * 122.95183 * 13 11 10 42 42 H 1.08997 * 109.47442 * 67.39377 * 15 14 13 43 43 H 1.09005 * 109.47739 * 187.39910 * 15 14 13 44 44 H 0.97006 * 120.00188 * 0.02562 * 18 16 15 45 45 H 0.96999 * 119.99465 * 180.02562 * 22 21 19 46 46 H 1.08999 * 110.66988 * 280.77925 * 27 14 13 47 47 H 1.08994 * 110.67443 * 157.63613 * 27 14 13 48 48 H 1.08995 * 109.47011 * 60.00045 * 30 28 11 49 49 H 1.08999 * 109.46765 * 179.97438 * 30 28 11 50 50 H 1.08995 * 109.47138 * 299.99614 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8508 0.5686 -0.8427 6 8 3.9658 0.5794 1.2202 7 6 5.1691 -0.1819 1.0988 8 6 4.1479 2.5561 -0.1245 9 8 4.8068 3.0105 0.7867 10 7 3.9634 3.2776 -1.2479 11 6 4.5584 4.6109 -1.3681 12 1 5.5071 4.6508 -0.8330 13 6 3.5908 5.6789 -0.8252 14 7 3.2512 6.5710 -1.9548 15 6 3.0623 7.9535 -1.4954 16 6 2.0701 7.9748 -0.3613 17 8 1.5699 6.9401 0.0265 18 7 1.7393 9.1435 0.2228 19 6 0.8371 9.1629 1.2549 20 1 0.3917 8.2416 1.6001 21 6 0.4956 10.3678 1.8567 22 7 1.0372 11.4890 1.4362 23 14 -0.7331 10.3941 3.2634 24 1 -1.1928 9.0104 3.5451 25 1 -0.0857 10.9566 4.4758 26 1 -1.8973 11.2362 2.8882 27 6 4.3909 6.4762 -2.9026 28 6 4.7661 4.9736 -2.8564 29 1 4.1025 4.3878 -3.4924 30 6 6.2260 4.7673 -3.2652 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6887 1.8464 0.8899 35 1 1.6886 1.8464 -0.8900 36 1 5.0198 -0.9847 0.3769 37 1 5.9766 0.4667 0.7593 38 1 5.4288 -0.6079 2.0680 39 1 3.4361 2.9142 -1.9765 40 1 2.6876 5.2022 -0.4440 41 1 4.0749 6.2502 -0.0332 42 1 4.0154 8.3557 -1.1520 43 1 2.6866 8.5618 -2.3182 44 1 2.1396 9.9711 -0.0870 45 1 0.7991 12.3301 1.8566 46 1 5.2247 7.0914 -2.5645 47 1 4.0811 6.7645 -3.9070 48 1 6.5011 3.7233 -3.1156 49 1 6.3492 5.0281 -4.3164 50 1 6.8675 5.4032 -2.6552 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208541270.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:32 Heat of formation + Delta-G solvation = -177.010951 kcal Electronic energy + Delta-G solvation = -31283.673615 eV Core-core repulsion = 26924.465101 eV Total energy + Delta-G solvation = -4359.208514 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.60632 -40.65469 -39.49920 -38.78903 -38.00012 -36.12592 -35.51638 -33.79853 -33.29776 -32.06758 -30.04698 -28.66388 -27.71901 -27.08315 -26.81629 -25.50244 -24.53258 -22.65498 -21.83346 -21.15775 -20.88606 -19.85099 -18.77860 -18.42146 -17.67788 -17.52779 -17.45551 -16.80136 -16.64468 -16.50269 -16.36375 -16.19441 -15.81715 -15.59402 -15.35779 -15.29966 -15.05200 -14.66517 -14.18804 -14.14653 -14.04838 -13.56626 -13.46532 -13.32101 -13.24217 -13.05696 -12.95588 -12.77884 -12.66392 -12.44388 -12.38395 -12.30920 -12.15497 -12.11232 -11.85132 -11.70764 -11.63488 -11.51714 -10.77020 -10.48442 -10.33719 -10.13642 -10.02585 -9.38355 -8.50247 -5.98758 1.30680 1.33094 1.38329 1.52479 1.89362 2.01179 2.25741 2.64892 2.75167 2.83429 3.16365 3.23556 3.54098 3.65886 3.70161 3.77628 3.90236 3.99534 4.18221 4.23582 4.31793 4.33746 4.34477 4.45376 4.50019 4.50600 4.52018 4.54111 4.58061 4.59273 4.69842 4.79613 4.82440 4.85143 4.85755 4.97981 5.11481 5.19611 5.35170 5.37957 5.48587 5.78358 5.89208 5.93451 6.04692 6.06449 6.44139 6.56792 7.09441 7.10235 7.51906 8.07872 8.67536 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009136 B = 0.002993 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3064.185354 B = 9352.251713 C =11280.805208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.396 6.396 3 C 0.070 3.930 4 C 0.083 3.917 5 H 0.130 0.870 6 O -0.382 6.382 7 C 0.026 3.974 8 C 0.491 3.509 9 O -0.568 6.568 10 N -0.698 5.698 11 C 0.139 3.861 12 H 0.080 0.920 13 C 0.049 3.951 14 N -0.504 5.504 15 C 0.046 3.954 16 C 0.436 3.564 17 O -0.616 6.616 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.271 1.271 26 H -0.267 1.267 27 C 0.035 3.965 28 C -0.084 4.084 29 H 0.109 0.891 30 C -0.137 4.137 31 H 0.107 0.893 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.037 0.963 38 H 0.097 0.903 39 H 0.418 0.582 40 H 0.066 0.934 41 H 0.008 0.992 42 H 0.066 0.934 43 H 0.118 0.882 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.054 0.946 47 H 0.111 0.889 48 H 0.063 0.937 49 H 0.083 0.917 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.414 -19.351 -13.756 25.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.315 6.315 3 C -0.007 4.007 4 C 0.022 3.978 5 H 0.148 0.852 6 O -0.299 6.299 7 C -0.069 4.069 8 C 0.277 3.723 9 O -0.446 6.446 10 N -0.352 5.352 11 C 0.033 3.967 12 H 0.098 0.902 13 C -0.080 4.080 14 N -0.229 5.229 15 C -0.085 4.085 16 C 0.223 3.777 17 O -0.502 6.502 18 N -0.210 5.210 19 C -0.462 4.462 20 H 0.094 0.906 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.197 1.197 26 H -0.192 1.192 27 C -0.093 4.093 28 C -0.104 4.104 29 H 0.128 0.872 30 C -0.195 4.195 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.116 0.884 39 H 0.256 0.744 40 H 0.084 0.916 41 H 0.027 0.973 42 H 0.083 0.917 43 H 0.136 0.864 44 H 0.230 0.770 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.129 0.871 48 H 0.082 0.918 49 H 0.102 0.898 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.047 -19.824 -12.841 24.952 hybrid contribution -0.049 1.354 1.118 1.757 sum 7.998 -18.469 -11.723 23.292 Atomic orbital electron populations 1.22985 0.79083 1.04284 1.00851 1.87828 1.21566 1.26477 1.95602 1.22460 0.90128 0.86007 1.02090 1.22057 0.94064 0.90783 0.90926 0.85229 1.88012 1.43357 1.67489 1.31081 1.23026 0.85275 0.94466 1.04181 1.21602 0.80527 0.88050 0.82093 1.90722 1.41671 1.72176 1.40042 1.45963 1.53859 1.16829 1.18561 1.21958 0.95217 0.81271 0.98225 0.90180 1.23044 0.98186 0.94545 0.92213 1.64617 1.40108 1.05258 1.12889 1.22032 0.97441 0.92333 0.96717 1.20821 0.86610 0.83651 0.86572 1.90482 1.58728 1.33313 1.67710 1.41924 1.39586 1.08087 1.31450 1.19659 1.20453 0.94682 1.11373 0.90578 1.26022 0.99987 0.94018 1.01162 1.69676 1.44394 0.98699 1.43292 0.84900 0.77864 0.78221 0.77526 1.20013 1.19651 1.19208 1.23562 0.91337 0.96259 0.98101 1.22339 0.99537 0.95838 0.92642 0.87246 1.21753 0.92785 1.02218 1.02697 0.87478 0.94414 0.92419 0.94139 0.88944 0.91279 0.94398 0.88447 0.74432 0.91585 0.97342 0.91657 0.86399 0.76995 0.91247 0.92765 0.87106 0.91824 0.89834 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.64 16 2 O -0.40 -8.64 10.67 -144.34 -1.54 -10.18 16 3 C 0.07 1.59 5.57 71.98 0.40 1.99 16 4 C 0.08 1.89 2.80 29.85 0.08 1.98 16 5 H 0.13 1.95 7.79 -2.39 -0.02 1.93 16 6 O -0.38 -10.56 9.85 -125.59 -1.24 -11.79 16 7 C 0.03 0.51 10.81 113.37 1.23 1.74 16 8 C 0.49 13.74 7.13 87.66 0.63 14.36 16 9 O -0.57 -21.84 16.16 15.94 0.26 -21.58 16 10 N -0.70 -15.59 4.91 -438.37 -2.15 -17.75 16 11 C 0.14 3.58 2.92 45.87 0.13 3.71 16 12 H 0.08 2.32 7.26 -2.39 -0.02 2.30 16 13 C 0.05 1.78 4.86 86.45 0.42 2.20 16 14 N -0.50 -15.93 5.26 -887.56 -4.67 -20.61 16 15 C 0.05 1.63 5.48 85.56 0.47 2.10 16 16 C 0.44 21.34 7.36 87.66 0.64 21.98 16 17 O -0.62 -34.67 13.37 -3.06 -0.04 -34.71 16 18 N -0.57 -30.23 5.29 -306.98 -1.62 -31.86 16 19 C -0.33 -19.38 9.68 84.04 0.81 -18.56 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 22 N -0.92 -50.48 13.05 21.66 0.28 -50.19 16 23 Si 0.99 44.08 29.55 68.60 2.03 46.11 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 27 C 0.03 0.71 6.00 86.65 0.52 1.23 16 28 C -0.08 -1.44 3.37 -9.59 -0.03 -1.47 16 29 H 0.11 1.48 7.75 -2.39 -0.02 1.46 16 30 C -0.14 -1.73 9.16 71.98 0.66 -1.07 16 31 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 1.64 7.77 -2.39 -0.02 1.62 16 36 H 0.07 0.96 8.08 -2.39 -0.02 0.94 16 37 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.42 6.25 8.08 -92.71 -0.75 5.50 16 40 H 0.07 2.90 6.53 -2.38 -0.02 2.88 16 41 H 0.01 0.35 7.59 -2.39 -0.02 0.33 16 42 H 0.07 2.11 7.89 -2.39 -0.02 2.09 16 43 H 0.12 3.56 8.14 -2.38 -0.02 3.54 16 44 H 0.40 19.79 7.90 -92.70 -0.73 19.05 16 45 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 46 H 0.05 1.08 7.73 -2.39 -0.02 1.06 16 47 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 50 H 0.05 0.74 8.10 -2.39 -0.02 0.72 16 Total: -1.00 -81.47 410.44 -1.55 -83.01 By element: Atomic # 1 Polarization: 38.43 SS G_CDS: -0.53 Total: 37.90 kcal Atomic # 6 Polarization: 23.96 SS G_CDS: 7.68 Total: 31.64 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -8.16 Total: -120.40 kcal Atomic # 8 Polarization: -75.70 SS G_CDS: -2.56 Total: -78.26 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -81.47 -1.55 -83.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208541270.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.000 kcal (2) G-P(sol) polarization free energy of solvation -81.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds