Wall clock time and date at job start Wed Apr 1 2020 02:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46954 * 2 1 4 4 C 1.42902 * 113.99677 * 179.97438 * 3 2 1 5 5 H 1.09005 * 109.47341 * 30.00581 * 4 3 2 6 6 C 1.52998 * 109.47475 * 270.00314 * 4 3 2 7 7 C 1.50700 * 109.47044 * 150.00459 * 4 3 2 8 8 O 1.21288 * 119.99791 * 4.99865 * 7 4 3 9 9 N 1.34773 * 120.00141 * 185.00167 * 7 4 3 10 10 C 1.46504 * 120.00064 * 179.97438 * 9 7 4 11 11 H 1.09003 * 110.34820 * 32.86340 * 10 9 7 12 12 C 1.54292 * 110.48082 * 270.63750 * 10 9 7 13 13 N 1.47905 * 107.08663 * 242.53337 * 12 10 9 14 14 C 1.46893 * 111.00136 * 214.00559 * 13 12 10 15 15 C 1.50700 * 109.47323 * 300.98021 * 14 13 12 16 16 O 1.21291 * 120.00111 * 354.03874 * 15 14 13 17 17 N 1.34776 * 120.00078 * 174.03226 * 15 14 13 18 18 C 1.37102 * 119.99856 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99930 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99948 * 180.02562 * 18 17 15 21 21 N 1.31421 * 119.99956 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00114 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47056 * 59.99677 * 22 20 18 24 24 H 1.48502 * 109.46872 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46686 * 299.99563 * 22 20 18 26 26 C 1.48537 * 105.81790 * 334.52255 * 13 12 10 27 27 C 1.54602 * 110.30772 * 154.99821 * 10 9 7 28 28 H 1.08997 * 110.72182 * 22.34222 * 27 10 9 29 29 O 1.42902 * 110.72319 * 259.23756 * 27 10 9 30 30 C 1.42895 * 113.99777 * 152.45382 * 29 27 10 31 31 H 1.08993 * 109.47474 * 300.00191 * 1 2 3 32 32 H 1.09002 * 109.46834 * 60.00117 * 1 2 3 33 33 H 1.08995 * 109.47247 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47296 * 240.00459 * 2 1 3 35 35 H 1.08996 * 109.47385 * 120.00278 * 2 1 3 36 36 H 1.08992 * 109.47366 * 180.02562 * 6 4 3 37 37 H 1.09005 * 109.47055 * 300.00443 * 6 4 3 38 38 H 1.08998 * 109.47114 * 59.99473 * 6 4 3 39 39 H 0.97003 * 120.00210 * 0.02562 * 9 7 4 40 40 H 1.08994 * 110.03055 * 123.10364 * 12 10 9 41 41 H 1.08999 * 109.94499 * 1.91588 * 12 10 9 42 42 H 1.09000 * 109.46837 * 60.98008 * 14 13 12 43 43 H 1.09002 * 109.47409 * 180.97771 * 14 13 12 44 44 H 0.96998 * 120.00448 * 0.02562 * 17 15 14 45 45 H 0.96999 * 119.99929 * 180.02562 * 21 20 18 46 46 H 1.09000 * 110.66430 * 280.77200 * 26 13 12 47 47 H 1.09000 * 110.81010 * 157.70670 * 26 13 12 48 48 H 1.08995 * 109.47021 * 299.99411 * 30 29 27 49 49 H 1.08997 * 109.47069 * 59.99604 * 30 29 27 50 50 H 1.09006 * 109.46816 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8636 0.6015 -0.5130 6 6 3.9388 1.5005 1.4432 7 6 3.8348 2.7263 -0.7097 8 8 2.9864 3.5047 -1.0911 9 7 5.1387 2.9938 -0.9212 10 6 5.5313 4.2245 -1.6123 11 1 4.8312 5.0278 -1.3829 12 6 5.5967 3.9907 -3.1360 13 7 6.9979 4.2189 -3.5509 14 6 7.0597 4.8071 -4.8955 15 6 6.3881 3.8838 -5.8791 16 8 6.0018 2.7917 -5.5195 17 7 6.2167 4.2715 -7.1585 18 6 5.6062 3.4312 -8.0534 19 1 5.2624 2.4588 -7.7331 20 6 5.4299 3.8307 -9.3725 21 7 5.8479 5.0142 -9.7621 22 14 4.5975 2.6861 -10.5918 23 1 3.2224 2.3791 -10.1231 24 1 4.5315 3.3432 -11.9219 25 1 5.3766 1.4265 -10.6995 26 6 7.5747 5.1411 -2.5394 27 6 6.9668 4.6322 -1.2082 28 1 7.5216 3.7713 -0.8350 29 8 6.9403 5.6760 -0.2326 30 6 8.0797 5.6947 0.6296 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 5.0253 1.5870 1.4437 37 1 3.5060 2.3591 1.9569 38 1 3.6466 0.5847 1.9571 39 1 5.8172 2.3711 -0.6166 40 1 4.9386 4.6913 -3.6498 41 1 5.3028 2.9671 -3.3681 42 1 6.5493 5.7702 -4.8945 43 1 8.1016 4.9484 -5.1828 44 1 6.5259 5.1447 -7.4463 45 1 5.7245 5.2932 -10.6829 46 1 7.2665 6.1681 -2.7352 47 1 8.6618 5.0639 -2.5202 48 1 8.1414 4.7504 1.1706 49 1 8.9829 5.8327 0.0353 50 1 7.9839 6.5154 1.3405 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211914853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:38 Heat of formation + Delta-G solvation = -147.502567 kcal Electronic energy + Delta-G solvation = -31012.969239 eV Core-core repulsion = 26655.040305 eV Total energy + Delta-G solvation = -4357.928934 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.41541 -39.32831 -38.14685 -37.73892 -36.53554 -34.45546 -33.83069 -32.68252 -31.27887 -30.72173 -29.96515 -28.12449 -27.20663 -26.02297 -24.75720 -23.96731 -22.90842 -21.52462 -21.14478 -20.28342 -19.12660 -17.87964 -17.65750 -17.35391 -16.94333 -16.19376 -15.96419 -15.85739 -15.39615 -15.14866 -15.06856 -14.72412 -14.39870 -14.27656 -14.15874 -13.72525 -13.50602 -13.38958 -13.32367 -12.91180 -12.81706 -12.54076 -12.38812 -12.24132 -12.21006 -11.90365 -11.81815 -11.68633 -11.54788 -11.47643 -11.28902 -11.20736 -10.92376 -10.86143 -10.42918 -10.20519 -10.10937 -9.94845 -9.51307 -9.47543 -9.07706 -8.47954 -8.05256 -7.93522 -6.40346 -3.81157 2.59899 2.67205 3.21428 3.26988 3.31096 3.39051 3.69985 3.91210 4.10259 4.31367 4.36973 4.51785 4.60595 4.68579 4.75344 4.84413 4.86791 5.00154 5.01656 5.09256 5.12881 5.14893 5.16572 5.25460 5.33510 5.36629 5.45405 5.46289 5.50138 5.62926 5.68229 5.70855 5.77415 5.81438 5.83929 5.93645 6.02274 6.25406 6.29573 6.57780 6.86774 6.87247 7.10144 7.14946 7.43182 7.56369 8.06713 8.20451 8.62436 9.19002 9.54989 10.06480 10.77354 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008110 B = 0.003063 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3451.842878 B = 9139.390482 C =12188.239855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.357 6.357 4 C 0.072 3.928 5 H 0.088 0.912 6 C -0.168 4.168 7 C 0.516 3.484 8 O -0.513 6.513 9 N -0.715 5.715 10 C 0.138 3.862 11 H 0.106 0.894 12 C 0.039 3.961 13 N -0.489 5.489 14 C 0.036 3.964 15 C 0.442 3.558 16 O -0.579 6.579 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.014 3.986 27 C 0.081 3.919 28 H 0.082 0.918 29 O -0.377 6.377 30 C 0.031 3.969 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.399 0.601 40 H 0.053 0.947 41 H 0.106 0.894 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.041 0.959 49 H 0.044 0.956 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.298 -3.922 23.458 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.010 3.990 5 H 0.106 0.894 6 C -0.226 4.226 7 C 0.301 3.699 8 O -0.387 6.387 9 N -0.369 5.369 10 C 0.033 3.967 11 H 0.124 0.876 12 C -0.089 4.089 13 N -0.214 5.214 14 C -0.095 4.095 15 C 0.227 3.773 16 O -0.463 6.463 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.115 4.115 27 C 0.022 3.978 28 H 0.100 0.900 29 O -0.295 6.295 30 C -0.065 4.065 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.234 0.766 40 H 0.071 0.929 41 H 0.124 0.876 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.375 -4.186 23.208 23.622 hybrid contribution 0.235 0.142 -0.812 0.857 sum 1.610 -4.044 22.396 22.815 Atomic orbital electron populations 1.21727 0.93409 1.02202 1.03476 1.22605 0.96025 0.83493 1.00126 1.88063 1.18217 1.26374 1.94911 1.21858 0.83986 0.96615 0.96544 0.89415 1.22217 1.01516 1.03708 0.95155 1.20346 0.82538 0.87662 0.79360 1.90747 1.49982 1.48467 1.49463 1.45860 1.07148 1.23670 1.60243 1.21944 0.95368 0.87182 0.92232 0.87593 1.23320 0.89368 1.04824 0.91412 1.64557 1.16133 1.40200 1.00496 1.22116 1.01939 0.96135 0.89355 1.19672 0.85541 0.88678 0.83395 1.90503 1.54700 1.22928 1.78186 1.41845 1.52513 1.18089 1.07472 1.19644 1.34072 0.99831 0.89305 0.87979 1.25260 0.97857 0.96808 0.97963 1.69607 1.46972 1.19015 1.18729 0.85921 0.79751 0.79698 0.78879 1.19883 1.20966 1.19892 1.23666 1.00529 0.96105 0.91224 1.23242 0.95606 0.90256 0.88742 0.89999 1.87953 1.43042 1.52071 1.46457 1.22804 0.88536 1.01682 0.93526 0.91845 0.91486 0.91033 0.92992 0.93310 0.91025 0.91068 0.91266 0.76634 0.92886 0.87629 0.93083 0.88903 0.77467 0.91811 0.92404 0.89482 0.94014 0.93759 0.89610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.05 0.51 6.47 37.16 0.24 0.75 16 3 O -0.36 -4.68 9.53 -55.09 -0.52 -5.21 16 4 C 0.07 0.78 3.13 -27.88 -0.09 0.69 16 5 H 0.09 0.78 7.79 -51.93 -0.40 0.37 16 6 C -0.17 -1.29 9.48 37.16 0.35 -0.94 16 7 C 0.52 7.41 7.18 -10.99 -0.08 7.33 16 8 O -0.51 -9.91 16.16 -14.31 -0.23 -10.14 16 9 N -0.72 -8.66 4.99 -52.33 -0.26 -8.92 16 10 C 0.14 1.94 3.12 -66.41 -0.21 1.73 16 11 H 0.11 1.69 7.49 -51.93 -0.39 1.30 16 12 C 0.04 0.69 5.20 -2.59 -0.01 0.68 16 13 N -0.49 -8.04 5.12 -231.70 -1.19 -9.23 16 14 C 0.04 0.65 5.30 -4.98 -0.03 0.63 16 15 C 0.44 10.52 7.39 -10.99 -0.08 10.44 16 16 O -0.58 -15.60 14.10 5.55 0.08 -15.53 16 17 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 18 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 20 C 0.02 0.62 5.50 -17.46 -0.10 0.52 16 21 N -0.90 -24.81 13.05 55.50 0.72 -24.09 16 22 Si 0.93 21.35 29.55 -169.99 -5.02 16.32 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 C 0.01 0.17 6.28 -1.90 -0.01 0.16 16 27 C 0.08 0.92 3.23 -24.87 -0.08 0.84 16 28 H 0.08 0.78 7.46 -51.93 -0.39 0.40 16 29 O -0.38 -4.28 10.44 -35.23 -0.37 -4.65 16 30 C 0.03 0.24 10.86 101.05 1.10 1.33 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.05 0.35 7.87 -51.93 -0.41 -0.06 16 36 H 0.07 0.41 7.92 -51.93 -0.41 0.00 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.43 7.87 -51.93 -0.41 0.02 16 39 H 0.40 3.52 8.16 -40.82 -0.33 3.18 16 40 H 0.05 1.02 7.71 -51.93 -0.40 0.62 16 41 H 0.11 2.15 6.82 -51.93 -0.35 1.80 16 42 H 0.05 0.86 8.00 -51.93 -0.42 0.44 16 43 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.39 9.63 7.90 -40.82 -0.32 9.31 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.06 0.73 7.95 -51.93 -0.41 0.32 16 47 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.04 0.26 8.11 -51.93 -0.42 -0.16 16 49 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 50 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 412.38 15.07 6.21 6.21 Total: -1.00 -35.72 412.38 -7.77 -43.49 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -8.38 Total: 11.55 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: 1.25 Total: 14.67 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.78 Total: -56.73 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -1.05 Total: -35.52 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.72 -7.77 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211914853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.008 kcal (2) G-P(sol) polarization free energy of solvation -35.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds