Wall clock time and date at job start Wed Apr 1 2020 02:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42892 * 109.47572 * 2 1 4 4 C 1.42905 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46975 * 329.99257 * 4 3 2 6 6 C 1.52994 * 109.47267 * 90.00284 * 4 3 2 7 7 C 1.50703 * 109.46942 * 210.00003 * 4 3 2 8 8 O 1.21291 * 119.99970 * 354.99678 * 7 4 3 9 9 N 1.34774 * 120.00318 * 174.99691 * 7 4 3 10 10 C 1.46497 * 120.00521 * 179.97438 * 9 7 4 11 11 H 1.09000 * 110.34857 * 32.85816 * 10 9 7 12 12 C 1.54303 * 110.47603 * 270.63952 * 10 9 7 13 13 N 1.47901 * 107.07999 * 242.53097 * 12 10 9 14 14 C 1.46897 * 110.99595 * 214.00792 * 13 12 10 15 15 C 1.50704 * 109.47374 * 300.98059 * 14 13 12 16 16 O 1.21291 * 119.99678 * 354.03724 * 15 14 13 17 17 N 1.34776 * 120.00115 * 174.03974 * 15 14 13 18 18 C 1.37095 * 119.99947 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99677 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00325 * 180.02562 * 18 17 15 21 21 N 1.31403 * 120.00347 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99801 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46985 * 89.99999 * 22 20 18 24 24 H 1.48499 * 109.47505 * 210.00398 * 22 20 18 25 25 H 1.48507 * 109.47313 * 330.00534 * 22 20 18 26 26 C 1.48533 * 105.82274 * 334.52263 * 13 12 10 27 27 C 1.54587 * 110.31039 * 154.99927 * 10 9 7 28 28 H 1.09007 * 110.72608 * 22.33975 * 27 10 9 29 29 O 1.42901 * 110.72734 * 259.23348 * 27 10 9 30 30 C 1.42894 * 114.00112 * 152.45244 * 29 27 10 31 31 H 1.09005 * 109.47578 * 59.99422 * 1 2 3 32 32 H 1.08996 * 109.47851 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46804 * 299.99995 * 1 2 3 34 34 H 1.09007 * 109.46804 * 240.00005 * 2 1 3 35 35 H 1.08997 * 109.47285 * 120.00495 * 2 1 3 36 36 H 1.09000 * 109.47140 * 179.97438 * 6 4 3 37 37 H 1.09007 * 109.46776 * 299.99452 * 6 4 3 38 38 H 1.08995 * 109.47468 * 59.99460 * 6 4 3 39 39 H 0.97003 * 119.99487 * 359.97438 * 9 7 4 40 40 H 1.08999 * 110.02523 * 123.10408 * 12 10 9 41 41 H 1.08996 * 109.94376 * 1.91722 * 12 10 9 42 42 H 1.08997 * 109.47849 * 60.98253 * 14 13 12 43 43 H 1.09003 * 109.47148 * 180.98277 * 14 13 12 44 44 H 0.97003 * 120.00049 * 359.97438 * 17 15 14 45 45 H 0.97005 * 120.00067 * 179.97438 * 21 20 18 46 46 H 1.09003 * 110.66408 * 280.77103 * 26 13 12 47 47 H 1.08998 * 110.81264 * 157.71606 * 26 13 12 48 48 H 1.09008 * 109.47259 * 180.02562 * 30 29 27 49 49 H 1.09000 * 109.47289 * 299.99517 * 30 29 27 50 50 H 1.08996 * 109.47531 * 60.00095 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 1 3.8635 0.6014 0.5130 6 6 3.9387 1.5005 -1.4432 7 6 3.8349 2.7261 0.7099 8 8 2.9865 3.5046 1.0913 9 7 5.1387 2.9936 0.9214 10 6 5.5315 4.2247 1.6116 11 1 4.7823 4.4982 2.3545 12 6 5.7248 5.3729 0.5990 13 7 7.1431 5.7854 0.6756 14 6 7.2841 7.2299 0.4489 15 6 6.7306 7.5819 -0.9079 16 8 6.3642 6.7036 -1.6598 17 7 6.6429 8.8726 -1.2858 18 6 6.1389 9.1929 -2.5198 19 1 5.8126 8.4107 -3.1894 20 6 6.0490 10.5235 -2.9097 21 7 5.5664 10.8304 -4.0927 22 14 6.6141 11.8761 -1.7519 23 1 8.0518 12.1622 -1.9893 24 1 5.8174 13.1046 -1.9996 25 1 6.4224 11.4368 -0.3463 26 6 7.6000 5.4134 2.0391 27 6 6.9126 4.0464 2.2827 28 1 7.4727 3.2425 1.8050 29 8 6.7664 3.7962 3.6820 30 6 7.8335 3.0350 4.2509 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3635 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.8932 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 5.0253 1.5869 -1.4436 37 1 3.6466 0.5846 -1.9571 38 1 3.5061 2.3590 -1.9568 39 1 5.8172 2.3708 0.6167 40 1 5.0795 6.2121 0.8587 41 1 5.4933 5.0241 -0.4073 42 1 6.7350 7.7737 1.2175 43 1 8.3383 7.5034 0.4934 44 1 6.9357 9.5751 -0.6842 45 1 5.5032 11.7594 -4.3647 46 1 7.2649 6.1484 2.7709 47 1 8.6846 5.3095 2.0692 48 1 7.6479 2.8878 5.3149 49 1 7.8930 2.0659 3.7555 50 1 8.7735 3.5701 4.1164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211914854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:41 Heat of formation + Delta-G solvation = -140.084728 kcal Electronic energy + Delta-G solvation = -31070.913593 eV Core-core repulsion = 26713.306321 eV Total energy + Delta-G solvation = -4357.607272 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.45572 -39.38483 -38.30101 -37.76561 -36.62660 -34.49364 -33.88465 -32.67547 -31.67744 -30.81652 -29.99198 -28.19919 -27.31741 -26.10788 -24.69021 -23.85530 -22.93177 -21.57185 -21.20015 -20.25559 -19.33020 -18.26231 -17.69697 -17.45897 -16.90289 -16.23183 -15.97020 -15.89250 -15.36332 -15.36071 -15.03902 -14.82661 -14.73707 -14.27894 -14.09540 -13.57758 -13.51575 -13.36219 -13.31322 -12.91598 -12.75232 -12.62770 -12.43200 -12.30222 -12.20909 -12.17519 -11.92835 -11.87326 -11.70712 -11.56641 -11.35511 -11.28122 -11.03307 -10.92511 -10.58348 -10.12680 -10.00539 -9.95287 -9.54780 -9.52034 -9.11499 -8.60100 -8.19200 -8.11680 -6.29589 -3.80922 2.56379 2.66821 3.04188 3.07936 3.16350 3.33218 3.68120 3.74404 4.07803 4.12426 4.31533 4.52426 4.55621 4.67330 4.72264 4.78565 4.79744 4.87255 4.97593 5.02006 5.07769 5.08881 5.21605 5.25319 5.28083 5.37451 5.41211 5.48815 5.51438 5.52099 5.60844 5.66103 5.70089 5.71861 5.87711 5.89906 5.96378 5.98660 6.24333 6.53259 6.80076 6.86027 6.99669 7.06190 7.40719 7.59069 8.15367 8.18560 8.60965 8.96375 9.43496 9.83479 10.83511 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009457 B = 0.002896 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.056906 B = 9666.801021 C =11992.532463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.075 3.925 5 H 0.083 0.917 6 C -0.172 4.172 7 C 0.516 3.484 8 O -0.513 6.513 9 N -0.716 5.716 10 C 0.139 3.861 11 H 0.106 0.894 12 C 0.038 3.962 13 N -0.488 5.488 14 C 0.033 3.967 15 C 0.451 3.549 16 O -0.560 6.560 17 N -0.590 5.590 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.270 1.270 26 C 0.014 3.986 27 C 0.080 3.920 28 H 0.083 0.917 29 O -0.378 6.378 30 C 0.031 3.969 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.050 0.950 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.399 0.601 40 H 0.053 0.947 41 H 0.108 0.892 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.058 0.942 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.042 0.958 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.662 -21.314 15.275 26.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.013 3.987 5 H 0.101 0.899 6 C -0.230 4.230 7 C 0.301 3.699 8 O -0.386 6.386 9 N -0.370 5.370 10 C 0.033 3.967 11 H 0.124 0.876 12 C -0.091 4.091 13 N -0.213 5.213 14 C -0.098 4.098 15 C 0.236 3.764 16 O -0.441 6.441 17 N -0.229 5.229 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.115 4.115 27 C 0.021 3.979 28 H 0.101 0.899 29 O -0.295 6.295 30 C -0.066 4.066 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.234 0.766 40 H 0.072 0.928 41 H 0.126 0.874 42 H 0.070 0.930 43 H 0.113 0.887 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.106 0.894 48 H 0.104 0.896 49 H 0.060 0.940 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.716 -21.202 14.581 25.789 hybrid contribution 0.801 1.133 1.117 1.781 sum 2.517 -20.069 15.698 25.603 Atomic orbital electron populations 1.21730 0.93418 1.02123 1.03588 1.22581 0.96031 0.83611 0.99941 1.88088 1.18322 1.26177 1.94921 1.21850 0.83829 0.96105 0.96915 0.89884 1.22249 1.01933 1.04044 0.94758 1.20374 0.82502 0.87691 0.79350 1.90748 1.50066 1.48627 1.49198 1.45854 1.07147 1.23564 1.60405 1.21926 0.95988 0.84807 0.93970 0.87584 1.23356 0.88556 0.96113 1.01077 1.64555 1.18199 1.14770 1.23818 1.22154 1.02216 0.88536 0.96943 1.19573 0.84991 0.83257 0.88554 1.90548 1.52088 1.47039 1.54451 1.42198 1.58047 1.05739 1.16955 1.19419 1.38153 0.94394 0.91266 0.86261 1.25034 0.97501 0.97258 0.96359 1.69618 1.44615 1.19145 1.18717 0.86676 0.79539 0.82539 0.80667 1.19607 1.20171 1.19521 1.23669 1.00791 0.96069 0.90975 1.23242 0.95499 0.97297 0.81835 0.89922 1.87951 1.45662 1.73989 1.21943 1.22808 0.90175 0.94467 0.99113 0.91590 0.91092 0.91658 0.93180 0.93401 0.90700 0.91291 0.90510 0.76600 0.92836 0.87409 0.93022 0.88728 0.79715 0.91613 0.92413 0.89418 0.89596 0.93981 0.93745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 37.15 0.38 -0.84 16 2 C 0.06 0.48 6.47 37.15 0.24 0.72 16 3 O -0.36 -4.63 9.53 -55.09 -0.52 -5.15 16 4 C 0.07 0.81 3.13 -27.88 -0.09 0.72 16 5 H 0.08 0.63 7.79 -51.93 -0.40 0.22 16 6 C -0.17 -1.66 9.48 37.15 0.35 -1.31 16 7 C 0.52 7.32 7.18 -10.99 -0.08 7.24 16 8 O -0.51 -9.81 16.16 -14.31 -0.23 -10.04 16 9 N -0.72 -8.45 4.99 -52.34 -0.26 -8.72 16 10 C 0.14 1.88 3.12 -66.42 -0.21 1.67 16 11 H 0.11 1.64 7.49 -51.93 -0.39 1.25 16 12 C 0.04 0.63 5.20 -2.59 -0.01 0.62 16 13 N -0.49 -7.63 5.12 -231.69 -1.19 -8.82 16 14 C 0.03 0.56 5.30 -4.98 -0.03 0.53 16 15 C 0.45 10.28 7.39 -10.98 -0.08 10.20 16 16 O -0.56 -14.86 14.10 5.55 0.08 -14.78 16 17 N -0.59 -14.20 5.09 -10.96 -0.06 -14.26 16 18 C -0.30 -8.67 10.16 -14.94 -0.15 -8.82 16 19 H 0.12 3.89 7.39 -52.48 -0.39 3.50 16 20 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 21 N -0.88 -26.02 13.96 55.50 0.77 -25.24 16 22 Si 0.88 19.61 27.74 -169.99 -4.71 14.90 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 26 C 0.01 0.16 6.28 -1.90 -0.01 0.15 16 27 C 0.08 0.88 3.23 -24.88 -0.08 0.80 16 28 H 0.08 0.75 7.46 -51.93 -0.39 0.36 16 29 O -0.38 -4.10 10.44 -35.23 -0.37 -4.47 16 30 C 0.03 0.22 10.86 101.05 1.10 1.32 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.05 0.36 7.87 -51.92 -0.41 -0.05 16 35 H 0.05 0.35 8.09 -51.93 -0.42 -0.07 16 36 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 37 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.40 3.41 8.16 -40.82 -0.33 3.07 16 40 H 0.05 0.99 7.71 -51.93 -0.40 0.59 16 41 H 0.11 2.15 6.82 -51.93 -0.35 1.79 16 42 H 0.05 0.79 8.00 -51.93 -0.42 0.37 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.37 7.84 5.76 -40.82 -0.24 7.60 16 45 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.06 0.68 7.95 -51.93 -0.41 0.27 16 47 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 49 H 0.04 0.25 8.11 -51.93 -0.42 -0.17 16 50 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 LS Contribution 409.26 15.07 6.17 6.17 Total: -1.00 -37.03 409.26 -7.42 -44.45 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: -8.34 Total: 11.90 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: 1.24 Total: 14.07 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.73 Total: -57.04 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -1.05 Total: -34.45 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.03 -7.42 -44.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211914854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.632 kcal (2) G-P(sol) polarization free energy of solvation -37.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds