Wall clock time and date at job start Wed Apr 1 2020 02:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42892 * 109.47572 * 2 1 4 4 C 1.42905 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46975 * 329.99257 * 4 3 2 6 6 C 1.52994 * 109.47267 * 90.00284 * 4 3 2 7 7 C 1.50703 * 109.46942 * 210.00003 * 4 3 2 8 8 O 1.21291 * 119.99970 * 354.99678 * 7 4 3 9 9 N 1.34774 * 120.00318 * 174.99691 * 7 4 3 10 10 C 1.46497 * 120.00521 * 179.97438 * 9 7 4 11 11 H 1.09000 * 110.34857 * 32.85816 * 10 9 7 12 12 C 1.54303 * 110.47603 * 270.63952 * 10 9 7 13 13 N 1.47901 * 107.07999 * 242.53097 * 12 10 9 14 14 C 1.46897 * 110.99595 * 214.00792 * 13 12 10 15 15 C 1.50704 * 109.47374 * 300.98059 * 14 13 12 16 16 O 1.21291 * 119.99678 * 354.03724 * 15 14 13 17 17 N 1.34776 * 120.00115 * 174.03974 * 15 14 13 18 18 C 1.37095 * 119.99947 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99677 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00325 * 180.02562 * 18 17 15 21 21 N 1.31403 * 120.00347 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99801 * 359.97438 * 20 18 17 23 23 H 1.48501 * 109.46985 * 89.99999 * 22 20 18 24 24 H 1.48499 * 109.47505 * 210.00398 * 22 20 18 25 25 H 1.48507 * 109.47313 * 330.00534 * 22 20 18 26 26 C 1.48533 * 105.82274 * 334.52263 * 13 12 10 27 27 C 1.54587 * 110.31039 * 154.99927 * 10 9 7 28 28 H 1.09007 * 110.72608 * 22.33975 * 27 10 9 29 29 O 1.42901 * 110.72734 * 259.23348 * 27 10 9 30 30 C 1.42894 * 114.00112 * 152.45244 * 29 27 10 31 31 H 1.09005 * 109.47578 * 59.99422 * 1 2 3 32 32 H 1.08996 * 109.47851 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46804 * 299.99995 * 1 2 3 34 34 H 1.09007 * 109.46804 * 240.00005 * 2 1 3 35 35 H 1.08997 * 109.47285 * 120.00495 * 2 1 3 36 36 H 1.09000 * 109.47140 * 179.97438 * 6 4 3 37 37 H 1.09007 * 109.46776 * 299.99452 * 6 4 3 38 38 H 1.08995 * 109.47468 * 59.99460 * 6 4 3 39 39 H 0.97003 * 119.99487 * 359.97438 * 9 7 4 40 40 H 1.08999 * 110.02523 * 123.10408 * 12 10 9 41 41 H 1.08996 * 109.94376 * 1.91722 * 12 10 9 42 42 H 1.08997 * 109.47849 * 60.98253 * 14 13 12 43 43 H 1.09003 * 109.47148 * 180.98277 * 14 13 12 44 44 H 0.97003 * 120.00049 * 359.97438 * 17 15 14 45 45 H 0.97005 * 120.00067 * 179.97438 * 21 20 18 46 46 H 1.09003 * 110.66408 * 280.77103 * 26 13 12 47 47 H 1.08998 * 110.81264 * 157.71606 * 26 13 12 48 48 H 1.09008 * 109.47259 * 180.02562 * 30 29 27 49 49 H 1.09000 * 109.47289 * 299.99517 * 30 29 27 50 50 H 1.08996 * 109.47531 * 60.00095 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4599 -0.0006 5 1 3.8635 0.6014 0.5130 6 6 3.9387 1.5005 -1.4432 7 6 3.8349 2.7261 0.7099 8 8 2.9865 3.5046 1.0913 9 7 5.1387 2.9936 0.9214 10 6 5.5315 4.2247 1.6116 11 1 4.7823 4.4982 2.3545 12 6 5.7248 5.3729 0.5990 13 7 7.1431 5.7854 0.6756 14 6 7.2841 7.2299 0.4489 15 6 6.7306 7.5819 -0.9079 16 8 6.3642 6.7036 -1.6598 17 7 6.6429 8.8726 -1.2858 18 6 6.1389 9.1929 -2.5198 19 1 5.8126 8.4107 -3.1894 20 6 6.0490 10.5235 -2.9097 21 7 5.5664 10.8304 -4.0927 22 14 6.6141 11.8761 -1.7519 23 1 8.0518 12.1622 -1.9893 24 1 5.8174 13.1046 -1.9996 25 1 6.4224 11.4368 -0.3463 26 6 7.6000 5.4134 2.0391 27 6 6.9126 4.0464 2.2827 28 1 7.4727 3.2425 1.8050 29 8 6.7664 3.7962 3.6820 30 6 7.8335 3.0350 4.2509 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3635 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.8932 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 5.0253 1.5869 -1.4436 37 1 3.6466 0.5846 -1.9571 38 1 3.5061 2.3590 -1.9568 39 1 5.8172 2.3708 0.6167 40 1 5.0795 6.2121 0.8587 41 1 5.4933 5.0241 -0.4073 42 1 6.7350 7.7737 1.2175 43 1 8.3383 7.5034 0.4934 44 1 6.9357 9.5751 -0.6842 45 1 5.5032 11.7594 -4.3647 46 1 7.2649 6.1484 2.7709 47 1 8.6846 5.3095 2.0692 48 1 7.6479 2.8878 5.3149 49 1 7.8930 2.0659 3.7555 50 1 8.7735 3.5701 4.1164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211914854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:36:40 Heat of formation + Delta-G solvation = -172.457660 kcal Electronic energy + Delta-G solvation = -31072.317389 eV Core-core repulsion = 26713.306321 eV Total energy + Delta-G solvation = -4359.011068 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.56918 -40.63850 -39.77138 -38.69014 -37.73225 -36.03819 -35.57023 -33.79489 -33.48777 -31.83641 -30.89759 -29.30522 -28.49988 -27.13647 -26.01392 -25.17183 -23.64973 -22.70562 -22.26387 -21.39623 -21.22429 -20.17585 -18.68169 -18.42517 -17.78454 -17.69416 -17.22848 -16.85421 -16.74043 -16.45572 -16.27525 -15.95790 -15.77900 -15.51869 -15.24226 -14.99371 -14.94084 -14.58265 -14.33873 -14.28162 -14.14272 -13.81176 -13.47992 -13.34700 -13.25087 -13.13133 -13.05220 -12.97808 -12.91623 -12.55704 -12.44949 -12.40265 -12.32273 -12.05653 -12.00168 -11.80784 -11.51067 -11.06482 -10.78235 -10.50351 -10.41704 -10.26832 -10.19413 -9.48121 -8.43026 -6.03882 1.28345 1.33585 1.42504 1.46372 1.72783 1.92844 2.21213 2.40634 2.78789 2.88162 3.12599 3.18900 3.44576 3.53887 3.66586 3.86531 3.91968 3.98239 4.09903 4.13119 4.18627 4.27265 4.30884 4.34192 4.44676 4.47458 4.52907 4.56098 4.60253 4.64968 4.71911 4.75751 4.82897 4.86443 4.93552 4.95923 5.00378 5.17394 5.25356 5.34724 5.49515 5.66324 5.79324 5.94807 6.09790 6.21920 6.46694 6.57175 6.86106 7.14559 7.36977 7.93830 8.74745 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009457 B = 0.002896 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2960.056906 B = 9666.801021 C =11992.532463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.047 3.953 3 O -0.397 6.397 4 C 0.078 3.922 5 H 0.127 0.873 6 C -0.168 4.168 7 C 0.507 3.493 8 O -0.575 6.575 9 N -0.700 5.700 10 C 0.143 3.857 11 H 0.083 0.917 12 C 0.045 3.955 13 N -0.498 5.498 14 C 0.043 3.957 15 C 0.448 3.552 16 O -0.605 6.605 17 N -0.592 5.592 18 C -0.327 4.327 19 H 0.054 0.946 20 C -0.016 4.016 21 N -0.935 5.935 22 Si 0.965 3.035 23 H -0.252 1.252 24 H -0.276 1.276 25 H -0.234 1.234 26 C 0.017 3.983 27 C 0.095 3.905 28 H 0.109 0.891 29 O -0.397 6.397 30 C 0.022 3.978 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.038 0.962 39 H 0.418 0.582 40 H 0.023 0.977 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.133 0.867 44 H 0.389 0.611 45 H 0.279 0.721 46 H 0.062 0.938 47 H 0.119 0.881 48 H 0.096 0.904 49 H 0.057 0.943 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.753 -22.462 18.535 29.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 O -0.316 6.316 4 C 0.018 3.982 5 H 0.145 0.855 6 C -0.225 4.225 7 C 0.294 3.706 8 O -0.453 6.453 9 N -0.354 5.354 10 C 0.036 3.964 11 H 0.101 0.899 12 C -0.085 4.085 13 N -0.223 5.223 14 C -0.088 4.088 15 C 0.235 3.765 16 O -0.489 6.489 17 N -0.234 5.234 18 C -0.456 4.456 19 H 0.072 0.928 20 C -0.214 4.214 21 N -0.575 5.575 22 Si 0.785 3.215 23 H -0.177 1.177 24 H -0.201 1.201 25 H -0.158 1.158 26 C -0.111 4.111 27 C 0.036 3.964 28 H 0.127 0.873 29 O -0.315 6.315 30 C -0.073 4.073 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.057 0.943 39 H 0.256 0.744 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.151 0.849 44 H 0.225 0.775 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.137 0.863 48 H 0.114 0.886 49 H 0.075 0.925 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.865 -22.405 17.863 29.065 hybrid contribution -0.204 1.340 0.050 1.357 sum 4.660 -21.065 17.913 28.042 Atomic orbital electron populations 1.21783 0.93440 1.03518 1.02232 1.22854 0.96173 0.82100 1.01764 1.88058 1.19483 1.28940 1.95149 1.21968 0.83511 0.95439 0.97332 0.85523 1.22247 1.02749 1.03642 0.93882 1.21214 0.82498 0.88371 0.78509 1.90712 1.51784 1.50855 1.51903 1.45721 1.07113 1.23148 1.59416 1.21715 0.97453 0.84384 0.92803 0.89934 1.23091 0.89274 0.96431 0.99698 1.64511 1.16832 1.14020 1.26969 1.22127 1.04152 0.89689 0.92828 1.20850 0.82959 0.82230 0.90413 1.90538 1.53383 1.48352 1.56597 1.42027 1.58574 1.06965 1.15806 1.18980 1.40188 0.93679 0.92773 0.92757 1.26123 0.96785 1.00062 0.98475 1.69803 1.45968 1.20314 1.21445 0.85365 0.79540 0.77368 0.79247 1.17661 1.20086 1.15785 1.23816 1.02500 0.96397 0.88403 1.23081 0.93040 0.97884 0.82365 0.87317 1.87938 1.47423 1.74728 1.21412 1.23065 0.89667 0.94925 0.99660 0.92846 0.88271 0.93135 0.91119 0.91576 0.88962 0.88702 0.94263 0.74351 0.95822 0.91479 0.90672 0.84883 0.77524 0.91129 0.91954 0.86256 0.88606 0.92481 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 10.28 71.98 0.74 -1.67 16 2 C 0.05 0.76 6.47 71.98 0.47 1.23 16 3 O -0.40 -10.44 9.53 -129.99 -1.24 -11.68 16 4 C 0.08 1.66 3.13 29.85 0.09 1.75 16 5 H 0.13 1.54 7.79 -2.39 -0.02 1.52 16 6 C -0.17 -3.16 9.48 71.98 0.68 -2.48 16 7 C 0.51 14.90 7.18 87.66 0.63 15.53 16 8 O -0.57 -23.62 16.16 15.92 0.26 -23.36 16 9 N -0.70 -16.42 4.99 -437.88 -2.18 -18.60 16 10 C 0.14 3.88 3.12 45.97 0.14 4.03 16 11 H 0.08 2.67 7.49 -2.39 -0.02 2.65 16 12 C 0.04 1.56 5.20 86.55 0.45 2.01 16 13 N -0.50 -14.84 5.12 -886.94 -4.54 -19.38 16 14 C 0.04 1.36 5.30 85.56 0.45 1.82 16 15 C 0.45 20.78 7.39 87.66 0.65 21.42 16 16 O -0.60 -34.01 14.10 -3.06 -0.04 -34.05 16 17 N -0.59 -28.73 5.09 -306.98 -1.56 -30.29 16 18 C -0.33 -19.64 10.16 84.04 0.85 -18.79 16 19 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 20 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 21 N -0.93 -57.58 13.96 21.66 0.30 -57.28 16 22 Si 0.97 39.76 27.74 68.60 1.90 41.67 16 23 H -0.25 -9.70 7.11 99.48 0.71 -8.99 16 24 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.23 -8.25 6.52 99.48 0.65 -7.60 16 26 C 0.02 0.34 6.28 86.65 0.54 0.88 16 27 C 0.10 1.82 3.23 31.80 0.10 1.92 16 28 H 0.11 1.52 7.46 -2.38 -0.02 1.50 16 29 O -0.40 -7.46 10.44 -148.98 -1.56 -9.02 16 30 C 0.02 0.23 10.86 113.37 1.23 1.47 16 31 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 0.92 8.14 -2.38 -0.02 0.91 16 34 H 0.07 0.84 7.87 -2.38 -0.02 0.82 16 35 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 36 H 0.09 1.37 7.92 -2.39 -0.02 1.35 16 37 H 0.09 1.29 7.87 -2.38 -0.02 1.27 16 38 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.42 6.39 8.16 -92.71 -0.76 5.63 16 40 H 0.02 0.93 7.71 -2.39 -0.02 0.92 16 41 H 0.07 2.88 6.82 -2.39 -0.02 2.87 16 42 H 0.08 2.07 8.00 -2.39 -0.02 2.05 16 43 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.39 15.67 5.76 -92.71 -0.53 15.14 16 45 H 0.28 15.70 8.31 -92.70 -0.77 14.93 16 46 H 0.06 1.24 7.95 -2.39 -0.02 1.22 16 47 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 49 H 0.06 0.43 8.11 -2.39 -0.02 0.41 16 50 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -92.06 409.26 -1.55 -93.61 By element: Atomic # 1 Polarization: 40.10 SS G_CDS: -0.40 Total: 39.70 kcal Atomic # 6 Polarization: 21.18 SS G_CDS: 7.50 Total: 28.68 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -7.98 Total: -125.55 kcal Atomic # 8 Polarization: -75.53 SS G_CDS: -2.58 Total: -78.11 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.90 Total: 41.67 kcal Total: -92.06 -1.55 -93.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211914854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.844 kcal (2) G-P(sol) polarization free energy of solvation -92.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds