Wall clock time and date at job start Wed Apr 1 2020 02:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47406 * 2 1 4 4 O 1.42899 * 109.47188 * 180.02562 * 3 2 1 5 5 C 1.42897 * 113.99959 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47238 * 180.02562 * 5 4 3 7 7 O 1.21285 * 119.99873 * 359.72498 * 6 5 4 8 8 N 1.34775 * 120.00024 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00267 * 179.72818 * 8 6 5 10 10 H 1.09007 * 110.27485 * 32.90530 * 9 8 6 11 11 C 1.54002 * 110.30740 * 270.71540 * 9 8 6 12 12 N 1.47898 * 107.05834 * 242.30422 * 11 9 8 13 13 C 1.46891 * 111.00233 * 214.15425 * 12 11 9 14 14 C 1.50701 * 109.47233 * 300.98416 * 13 12 11 15 15 O 1.21290 * 119.99841 * 354.04409 * 14 13 12 16 16 N 1.34775 * 120.00203 * 174.03384 * 14 13 12 17 17 C 1.37098 * 120.00284 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99636 * 359.97438 * 17 16 14 19 19 C 1.38949 * 120.00147 * 180.02562 * 17 16 14 20 20 N 1.31410 * 119.99685 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99840 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47129 * 60.00276 * 21 19 17 23 23 H 1.48503 * 109.46881 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47600 * 300.00342 * 21 19 17 25 25 C 1.48541 * 105.81851 * 334.67089 * 12 11 9 26 26 C 1.54588 * 110.31260 * 154.99666 * 9 8 6 27 27 H 1.08997 * 110.72720 * 22.51509 * 26 9 8 28 28 O 1.42896 * 110.72541 * 259.23033 * 26 9 8 29 29 C 1.42898 * 114.00143 * 150.00424 * 28 26 9 30 30 H 1.09009 * 109.46954 * 299.99844 * 1 2 3 31 31 H 1.08997 * 109.47250 * 59.99483 * 1 2 3 32 32 H 1.08999 * 109.47368 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47134 * 239.99852 * 2 1 3 34 34 H 1.09005 * 109.47127 * 120.00265 * 2 1 3 35 35 H 1.09001 * 109.47095 * 59.99828 * 3 2 1 36 36 H 1.09005 * 109.47194 * 300.00225 * 3 2 1 37 37 H 1.09007 * 109.46845 * 60.00132 * 5 4 3 38 38 H 1.09000 * 109.47536 * 300.00517 * 5 4 3 39 39 H 0.97001 * 120.00140 * 359.72229 * 8 6 5 40 40 H 1.09004 * 109.91374 * 1.65744 * 11 9 8 41 41 H 1.09001 * 109.91463 * 122.95043 * 11 9 8 42 42 H 1.09004 * 109.47085 * 60.98375 * 13 12 11 43 43 H 1.08994 * 109.47335 * 180.98417 * 13 12 11 44 44 H 0.97007 * 120.00151 * 0.02562 * 16 14 13 45 45 H 0.97005 * 119.99583 * 180.02562 * 20 19 17 46 46 H 1.08996 * 110.66194 * 280.76733 * 25 12 11 47 47 H 1.09000 * 110.66458 * 157.64301 * 25 12 11 48 48 H 1.09009 * 109.46464 * 299.99760 * 29 28 26 49 49 H 1.08990 * 109.47532 * 59.99670 * 29 28 26 50 50 H 1.09006 * 109.47248 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7478 -0.0012 6 6 5.5526 2.6288 -0.0025 7 8 6.0741 1.5338 0.0023 8 7 6.3165 3.7391 -0.0027 9 6 7.7770 3.6235 0.0021 10 1 8.0875 2.7366 -0.5503 11 6 8.3038 3.5667 1.4481 12 7 9.1663 4.7524 1.6424 13 6 10.2865 4.4467 2.5422 14 6 9.7504 3.9911 3.8749 15 8 8.5581 4.0298 4.0943 16 7 10.5958 3.5405 4.8229 17 6 10.1080 3.1254 6.0351 18 1 9.0464 3.1600 6.2305 19 6 10.9797 2.6613 7.0127 20 7 12.2715 2.6207 6.7754 21 14 10.3151 2.0966 8.6646 22 1 9.3725 0.9675 8.4591 23 1 11.4407 1.6507 9.5246 24 1 9.6038 3.2217 9.3230 25 6 9.6558 5.1230 0.2898 26 6 8.4175 4.8895 -0.6117 27 1 7.7327 5.7354 -0.5531 28 8 8.8141 4.6509 -1.9636 29 6 8.7707 5.8118 -2.7956 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7290 3.2890 0.8888 38 1 3.7283 3.2885 -0.8912 39 1 5.8994 4.6149 -0.0062 40 1 7.4693 3.5957 2.1487 41 1 8.8850 2.6565 1.5960 42 1 10.8971 3.6558 2.1065 43 1 10.8948 5.3403 2.6816 44 1 11.5494 3.5097 4.6476 45 1 12.8800 2.2964 7.4577 46 1 10.4791 4.4757 -0.0120 47 1 9.9587 6.1698 0.2639 48 1 7.7530 6.2013 -2.8229 49 1 9.4401 6.5723 -2.3935 50 1 9.0854 5.5473 -3.8052 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211989106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:01 Heat of formation + Delta-G solvation = -150.306676 kcal Electronic energy + Delta-G solvation = -30381.910634 eV Core-core repulsion = 26023.860105 eV Total energy + Delta-G solvation = -4358.050529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.33206 -39.18703 -38.14053 -37.79152 -36.55284 -34.42579 -33.93552 -33.81320 -31.30226 -30.70945 -28.97212 -27.75071 -27.13475 -26.08375 -25.54123 -24.08286 -21.89567 -21.58121 -21.22198 -20.35571 -19.12113 -17.87367 -17.54225 -17.30282 -16.87691 -16.71472 -15.97792 -15.94374 -15.39384 -15.26723 -15.09559 -14.88997 -14.57511 -14.37079 -14.18788 -13.93844 -13.66823 -13.52030 -13.37979 -12.90389 -12.59323 -12.41170 -12.36012 -12.24706 -12.20081 -11.90007 -11.81094 -11.63899 -11.47434 -11.22271 -11.19727 -11.16532 -10.92733 -10.87050 -10.42321 -10.19889 -10.01815 -9.93522 -9.73253 -9.46992 -9.09086 -8.47506 -8.04918 -7.93036 -6.39784 -3.80484 2.57148 2.62960 3.21999 3.27504 3.31622 3.38436 3.74009 3.91785 4.11015 4.32281 4.38020 4.58405 4.64438 4.65952 4.77175 4.83368 4.87382 4.98660 5.01414 5.01717 5.09048 5.14777 5.15383 5.18020 5.26054 5.33964 5.41073 5.43884 5.46291 5.62866 5.68392 5.71013 5.81139 5.83185 5.84086 5.92338 6.02358 6.25378 6.29171 6.57582 6.81906 6.86793 7.10292 7.14937 7.41406 7.56962 8.07296 8.18994 8.63015 9.19611 9.55562 10.07072 10.77889 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.007221 B = 0.002804 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3876.847724 B = 9984.898075 C =13490.808700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.363 6.363 5 C 0.047 3.953 6 C 0.515 3.485 7 O -0.513 6.513 8 N -0.717 5.717 9 C 0.138 3.862 10 H 0.106 0.894 11 C 0.039 3.961 12 N -0.489 5.489 13 C 0.036 3.964 14 C 0.442 3.558 15 O -0.579 6.579 16 N -0.562 5.562 17 C -0.298 4.298 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.274 1.274 25 C 0.015 3.985 26 C 0.080 3.920 27 H 0.083 0.917 28 O -0.377 6.377 29 C 0.031 3.969 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.400 0.600 40 H 0.106 0.894 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.041 0.959 49 H 0.044 0.956 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.187 5.640 -19.430 24.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.017 4.017 4 O -0.281 6.281 5 C -0.034 4.034 6 C 0.300 3.700 7 O -0.387 6.387 8 N -0.371 5.371 9 C 0.032 3.968 10 H 0.124 0.876 11 C -0.089 4.089 12 N -0.214 5.214 13 C -0.095 4.095 14 C 0.227 3.773 15 O -0.463 6.463 16 N -0.199 5.199 17 C -0.428 4.428 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.114 4.114 26 C 0.021 3.979 27 H 0.101 0.899 28 O -0.295 6.295 29 C -0.065 4.065 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.234 0.766 40 H 0.124 0.876 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.578 4.834 -18.972 24.409 hybrid contribution 0.530 0.113 0.513 0.746 sum -14.047 4.948 -18.459 23.718 Atomic orbital electron populations 1.21696 0.94709 1.02306 1.01931 1.21455 0.95542 0.95446 1.03789 1.22634 0.80531 0.98319 1.00195 1.88021 1.19515 1.25172 1.95419 1.22164 0.91584 0.87032 1.02573 1.20210 0.88595 0.84639 0.76540 1.90758 1.74472 1.26385 1.47091 1.45824 1.06303 1.08701 1.76272 1.21933 0.79122 0.99005 0.96725 0.87593 1.23278 0.99198 0.92055 0.94407 1.64567 1.16791 1.33189 1.06870 1.22114 0.92773 1.00927 0.93715 1.19674 0.87390 0.84476 0.85767 1.90504 1.15507 1.59452 1.80843 1.41845 1.09066 1.56064 1.12938 1.19640 0.94896 1.38847 0.89423 0.87984 1.25261 0.95050 0.97579 1.00046 1.69606 1.01909 1.47076 1.35713 0.85919 0.78055 0.79212 0.81042 1.19878 1.20975 1.19906 1.23659 0.96481 1.02075 0.89219 1.23241 0.95725 0.97069 0.81836 0.89899 1.87952 1.88267 1.33398 1.19904 1.22812 1.00265 0.88412 0.95059 0.92478 0.92614 0.91960 0.91003 0.90799 0.93047 0.93289 0.89970 0.90454 0.76576 0.87570 0.92864 0.93081 0.88906 0.77468 0.91823 0.92373 0.89461 0.94024 0.93738 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 37.16 0.37 -0.55 16 2 C -0.12 -1.06 6.30 -26.73 -0.17 -1.23 16 3 C 0.06 0.53 5.94 37.16 0.22 0.76 16 4 O -0.36 -4.69 9.88 -55.14 -0.54 -5.23 16 5 C 0.05 0.48 6.42 36.00 0.23 0.71 16 6 C 0.52 7.27 7.91 -10.99 -0.09 7.19 16 7 O -0.51 -9.86 16.15 -14.36 -0.23 -10.09 16 8 N -0.72 -8.55 5.01 -52.49 -0.26 -8.82 16 9 C 0.14 1.92 3.11 -66.57 -0.21 1.71 16 10 H 0.11 1.68 7.49 -51.93 -0.39 1.30 16 11 C 0.04 0.69 5.18 -2.75 -0.01 0.67 16 12 N -0.49 -8.05 5.12 -231.89 -1.19 -9.24 16 13 C 0.04 0.66 5.30 -4.98 -0.03 0.63 16 14 C 0.44 10.53 7.39 -10.99 -0.08 10.45 16 15 O -0.58 -15.63 14.10 5.55 0.08 -15.56 16 16 N -0.56 -14.45 5.29 -10.96 -0.06 -14.50 16 17 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 18 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 19 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 20 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 21 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.01 0.18 6.28 -1.89 -0.01 0.17 16 26 C 0.08 0.92 3.26 -24.87 -0.08 0.84 16 27 H 0.08 0.79 7.44 -51.93 -0.39 0.40 16 28 O -0.38 -4.28 10.44 -35.23 -0.37 -4.65 16 29 C 0.03 0.24 10.85 101.05 1.10 1.33 16 30 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.40 3.38 8.38 -40.82 -0.34 3.04 16 40 H 0.11 2.16 6.81 -51.93 -0.35 1.81 16 41 H 0.05 1.03 7.71 -51.93 -0.40 0.63 16 42 H 0.05 0.86 8.00 -51.93 -0.42 0.44 16 43 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.39 9.64 7.90 -40.82 -0.32 9.31 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.06 0.74 7.95 -51.93 -0.41 0.33 16 47 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.04 0.26 8.12 -51.92 -0.42 -0.16 16 49 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 50 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 414.05 15.07 6.24 6.24 Total: -1.00 -35.97 414.05 -8.08 -44.05 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -8.45 Total: 10.91 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: 1.00 Total: 14.62 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.78 Total: -56.66 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -1.07 Total: -35.54 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.97 -8.08 -44.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211989106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.256 kcal (2) G-P(sol) polarization free energy of solvation -35.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds