Wall clock time and date at job start Wed Apr 1 2020 02:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47406 * 2 1 4 4 O 1.42899 * 109.47188 * 180.02562 * 3 2 1 5 5 C 1.42897 * 113.99959 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47238 * 180.02562 * 5 4 3 7 7 O 1.21285 * 119.99873 * 359.72498 * 6 5 4 8 8 N 1.34775 * 120.00024 * 180.02562 * 6 5 4 9 9 C 1.46502 * 120.00267 * 179.72818 * 8 6 5 10 10 H 1.09007 * 110.27485 * 32.90530 * 9 8 6 11 11 C 1.54002 * 110.30740 * 270.71540 * 9 8 6 12 12 N 1.47898 * 107.05834 * 242.30422 * 11 9 8 13 13 C 1.46891 * 111.00233 * 214.15425 * 12 11 9 14 14 C 1.50701 * 109.47233 * 300.98416 * 13 12 11 15 15 O 1.21290 * 119.99841 * 354.04409 * 14 13 12 16 16 N 1.34775 * 120.00203 * 174.03384 * 14 13 12 17 17 C 1.37098 * 120.00284 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99636 * 359.97438 * 17 16 14 19 19 C 1.38949 * 120.00147 * 180.02562 * 17 16 14 20 20 N 1.31410 * 119.99685 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99840 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47129 * 60.00276 * 21 19 17 23 23 H 1.48503 * 109.46881 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47600 * 300.00342 * 21 19 17 25 25 C 1.48541 * 105.81851 * 334.67089 * 12 11 9 26 26 C 1.54588 * 110.31260 * 154.99666 * 9 8 6 27 27 H 1.08997 * 110.72720 * 22.51509 * 26 9 8 28 28 O 1.42896 * 110.72541 * 259.23033 * 26 9 8 29 29 C 1.42898 * 114.00143 * 150.00424 * 28 26 9 30 30 H 1.09009 * 109.46954 * 299.99844 * 1 2 3 31 31 H 1.08997 * 109.47250 * 59.99483 * 1 2 3 32 32 H 1.08999 * 109.47368 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47134 * 239.99852 * 2 1 3 34 34 H 1.09005 * 109.47127 * 120.00265 * 2 1 3 35 35 H 1.09001 * 109.47095 * 59.99828 * 3 2 1 36 36 H 1.09005 * 109.47194 * 300.00225 * 3 2 1 37 37 H 1.09007 * 109.46845 * 60.00132 * 5 4 3 38 38 H 1.09000 * 109.47536 * 300.00517 * 5 4 3 39 39 H 0.97001 * 120.00140 * 359.72229 * 8 6 5 40 40 H 1.09004 * 109.91374 * 1.65744 * 11 9 8 41 41 H 1.09001 * 109.91463 * 122.95043 * 11 9 8 42 42 H 1.09004 * 109.47085 * 60.98375 * 13 12 11 43 43 H 1.08994 * 109.47335 * 180.98417 * 13 12 11 44 44 H 0.97007 * 120.00151 * 0.02562 * 16 14 13 45 45 H 0.97005 * 119.99583 * 180.02562 * 20 19 17 46 46 H 1.08996 * 110.66194 * 280.76733 * 25 12 11 47 47 H 1.09000 * 110.66458 * 157.64301 * 25 12 11 48 48 H 1.09009 * 109.46464 * 299.99760 * 29 28 26 49 49 H 1.08990 * 109.47532 * 59.99670 * 29 28 26 50 50 H 1.09006 * 109.47248 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4424 -0.0006 5 6 4.0503 2.7478 -0.0012 6 6 5.5526 2.6288 -0.0025 7 8 6.0741 1.5338 0.0023 8 7 6.3165 3.7391 -0.0027 9 6 7.7770 3.6235 0.0021 10 1 8.0875 2.7366 -0.5503 11 6 8.3038 3.5667 1.4481 12 7 9.1663 4.7524 1.6424 13 6 10.2865 4.4467 2.5422 14 6 9.7504 3.9911 3.8749 15 8 8.5581 4.0298 4.0943 16 7 10.5958 3.5405 4.8229 17 6 10.1080 3.1254 6.0351 18 1 9.0464 3.1600 6.2305 19 6 10.9797 2.6613 7.0127 20 7 12.2715 2.6207 6.7754 21 14 10.3151 2.0966 8.6646 22 1 9.3725 0.9675 8.4591 23 1 11.4407 1.6507 9.5246 24 1 9.6038 3.2217 9.3230 25 6 9.6558 5.1230 0.2898 26 6 8.4175 4.8895 -0.6117 27 1 7.7327 5.7354 -0.5531 28 8 8.8141 4.6509 -1.9636 29 6 8.7707 5.8118 -2.7956 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7290 3.2890 0.8888 38 1 3.7283 3.2885 -0.8912 39 1 5.8994 4.6149 -0.0062 40 1 7.4693 3.5957 2.1487 41 1 8.8850 2.6565 1.5960 42 1 10.8971 3.6558 2.1065 43 1 10.8948 5.3403 2.6816 44 1 11.5494 3.5097 4.6476 45 1 12.8800 2.2964 7.4577 46 1 10.4791 4.4757 -0.0120 47 1 9.9587 6.1698 0.2639 48 1 7.7530 6.2013 -2.8229 49 1 9.4401 6.5723 -2.3935 50 1 9.0854 5.5473 -3.8052 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211989106.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:00 Heat of formation + Delta-G solvation = -180.209047 kcal Electronic energy + Delta-G solvation = -30383.207298 eV Core-core repulsion = 26023.860105 eV Total energy + Delta-G solvation = -4359.347193 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.48462 -40.46224 -39.65072 -38.68318 -37.72415 -35.99886 -35.50203 -34.59845 -33.32094 -31.97349 -29.97857 -28.88079 -28.18691 -27.11491 -26.50991 -25.67928 -22.87922 -22.50308 -22.27946 -21.51960 -20.94451 -19.88639 -18.56666 -18.31671 -17.77316 -17.70625 -17.48094 -17.02789 -16.60309 -16.47135 -16.29251 -15.98113 -15.87962 -15.76972 -15.42530 -15.07727 -14.92383 -14.69408 -14.55854 -14.33003 -13.92471 -13.50713 -13.35757 -13.16624 -13.13645 -13.06723 -12.96594 -12.93080 -12.88275 -12.55068 -12.45164 -12.41631 -12.13785 -11.84800 -11.82586 -11.80399 -11.50006 -11.03198 -10.73549 -10.68516 -10.34929 -10.18314 -10.03064 -9.47764 -8.48404 -5.97094 1.37684 1.39417 1.48848 1.50511 1.69725 2.02402 2.25481 2.46982 2.87802 2.99590 3.18003 3.26142 3.50894 3.56371 3.73531 3.91954 4.02198 4.08866 4.12881 4.20498 4.23122 4.26684 4.30471 4.40216 4.40695 4.48579 4.52626 4.55542 4.60621 4.64078 4.66215 4.72756 4.81953 4.83611 4.92915 4.95793 5.15138 5.21932 5.33327 5.35638 5.38548 5.66663 5.76381 6.01270 6.07599 6.21747 6.47789 6.57859 7.10468 7.16642 7.53273 8.08875 8.68874 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.007221 B = 0.002804 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3876.847724 B = 9984.898075 C =13490.808700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.055 3.945 4 O -0.404 6.404 5 C 0.050 3.950 6 C 0.507 3.493 7 O -0.576 6.576 8 N -0.701 5.701 9 C 0.143 3.857 10 H 0.082 0.918 11 C 0.046 3.954 12 N -0.495 5.495 13 C 0.047 3.953 14 C 0.438 3.562 15 O -0.615 6.615 16 N -0.573 5.573 17 C -0.333 4.333 18 H 0.078 0.922 19 C -0.014 4.014 20 N -0.920 5.920 21 Si 0.993 3.007 22 H -0.275 1.275 23 H -0.269 1.269 24 H -0.269 1.269 25 C 0.016 3.984 26 C 0.097 3.903 27 H 0.112 0.888 28 O -0.397 6.397 29 C 0.022 3.978 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.120 0.880 39 H 0.420 0.580 40 H 0.071 0.929 41 H 0.020 0.980 42 H 0.065 0.935 43 H 0.122 0.878 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.058 0.942 47 H 0.117 0.883 48 H 0.058 0.942 49 H 0.057 0.943 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.968 7.930 -20.735 26.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.020 4.020 4 O -0.324 6.324 5 C -0.029 4.029 6 C 0.294 3.706 7 O -0.455 6.455 8 N -0.355 5.355 9 C 0.036 3.964 10 H 0.100 0.900 11 C -0.083 4.083 12 N -0.221 5.221 13 C -0.084 4.084 14 C 0.225 3.775 15 O -0.501 6.501 16 N -0.211 5.211 17 C -0.462 4.462 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.816 3.184 22 H -0.200 1.200 23 H -0.193 1.193 24 H -0.194 1.194 25 C -0.112 4.112 26 C 0.038 3.962 27 H 0.130 0.870 28 O -0.315 6.315 29 C -0.073 4.073 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.123 0.877 38 H 0.137 0.863 39 H 0.258 0.742 40 H 0.089 0.911 41 H 0.038 0.962 42 H 0.083 0.917 43 H 0.140 0.860 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.135 0.865 48 H 0.076 0.924 49 H 0.076 0.924 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.358 7.191 -20.308 26.457 hybrid contribution 0.770 -0.575 0.841 1.277 sum -14.588 6.616 -19.467 25.210 Atomic orbital electron populations 1.21661 0.92683 1.02876 1.02813 1.21502 0.97269 0.95390 1.02435 1.22841 0.78690 0.98649 1.01854 1.87978 1.21744 1.26859 1.95807 1.22306 0.88328 0.86771 1.05508 1.21091 0.90530 0.83986 0.75002 1.90727 1.75870 1.28761 1.50126 1.45677 1.05466 1.09433 1.74971 1.21675 0.80436 0.99935 0.94310 0.90028 1.23029 0.97989 0.91312 0.95964 1.64529 1.16474 1.32067 1.09019 1.22019 0.93340 1.02407 0.90665 1.20725 0.86825 0.82720 0.87226 1.90479 1.17217 1.60428 1.81946 1.41918 1.09429 1.56811 1.12910 1.19602 0.94202 1.41144 0.91299 0.90413 1.26048 0.95282 0.96988 1.03017 1.69667 1.02585 1.46977 1.36849 0.85000 0.77815 0.78631 0.76958 1.20033 1.19322 1.19421 1.23812 0.96990 1.03613 0.86820 1.23071 0.95283 0.95899 0.81995 0.87047 1.87940 1.88297 1.35571 1.19710 1.23075 1.01782 0.87540 0.94926 0.91915 0.91333 0.91619 0.91919 0.92691 0.91892 0.90895 0.87748 0.86284 0.74175 0.91109 0.96157 0.91734 0.85979 0.77018 0.91266 0.92380 0.86480 0.92357 0.92407 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.91 71.98 0.71 -0.88 16 2 C -0.13 -2.17 6.30 30.59 0.19 -1.98 16 3 C 0.06 0.92 5.94 71.98 0.43 1.35 16 4 O -0.40 -10.41 9.88 -129.94 -1.28 -11.69 16 5 C 0.05 0.97 6.42 71.23 0.46 1.42 16 6 C 0.51 14.52 7.91 87.66 0.69 15.21 16 7 O -0.58 -23.54 16.15 15.99 0.26 -23.28 16 8 N -0.70 -16.35 5.01 -438.36 -2.20 -18.54 16 9 C 0.14 4.02 3.11 45.87 0.14 4.16 16 10 H 0.08 2.73 7.49 -2.38 -0.02 2.71 16 11 C 0.05 1.69 5.18 86.45 0.45 2.14 16 12 N -0.50 -15.96 5.12 -887.55 -4.54 -20.51 16 13 C 0.05 1.67 5.30 85.56 0.45 2.13 16 14 C 0.44 21.46 7.39 87.66 0.65 22.11 16 15 O -0.61 -34.58 14.10 -3.06 -0.04 -34.63 16 16 N -0.57 -30.32 5.29 -306.99 -1.62 -31.94 16 17 C -0.33 -19.41 9.68 84.04 0.81 -18.60 16 18 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 19 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 20 N -0.92 -50.75 13.05 21.66 0.28 -50.46 16 21 Si 0.99 44.09 29.55 68.60 2.03 46.12 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 C 0.02 0.36 6.28 86.65 0.54 0.90 16 26 C 0.10 1.98 3.26 31.80 0.10 2.09 16 27 H 0.11 1.67 7.44 -2.39 -0.02 1.65 16 28 O -0.40 -8.05 10.44 -148.98 -1.56 -9.60 16 29 C 0.02 0.26 10.85 113.37 1.23 1.49 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.05 1.10 8.14 -2.38 -0.02 1.09 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.42 6.19 8.38 -92.71 -0.78 5.41 16 40 H 0.07 3.06 6.81 -2.38 -0.02 3.04 16 41 H 0.02 0.84 7.71 -2.39 -0.02 0.82 16 42 H 0.06 2.14 8.00 -2.38 -0.02 2.12 16 43 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 44 H 0.40 19.88 7.90 -92.70 -0.73 19.15 16 45 H 0.28 14.37 8.31 -92.70 -0.77 13.60 16 46 H 0.06 1.35 7.95 -2.39 -0.02 1.33 16 47 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.06 0.50 8.12 -2.38 -0.02 0.48 16 49 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 50 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -83.59 414.05 -1.90 -85.49 By element: Atomic # 1 Polarization: 38.33 SS G_CDS: -0.56 Total: 37.77 kcal Atomic # 6 Polarization: 23.93 SS G_CDS: 7.33 Total: 31.27 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -8.08 Total: -121.45 kcal Atomic # 8 Polarization: -76.57 SS G_CDS: -2.62 Total: -79.20 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -83.59 -1.90 -85.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211989106.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.716 kcal (2) G-P(sol) polarization free energy of solvation -83.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds