Wall clock time and date at job start Wed Apr 1 2020 01:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46754 * 2 1 4 4 H 1.09002 * 109.47070 * 55.00009 * 3 2 1 5 5 O 1.42898 * 109.47113 * 294.99879 * 3 2 1 6 6 C 1.42902 * 113.99874 * 150.00334 * 5 3 2 7 7 C 1.50703 * 109.46966 * 174.99919 * 3 2 1 8 8 O 1.21282 * 120.00069 * 114.99802 * 7 3 2 9 9 N 1.34770 * 119.99967 * 295.00335 * 7 3 2 10 10 C 1.46504 * 120.00306 * 180.02562 * 9 7 3 11 11 H 1.09005 * 110.64324 * 36.69125 * 10 9 7 12 12 C 1.54935 * 110.72174 * 273.54749 * 10 9 7 13 13 N 1.48534 * 103.22776 * 204.22487 * 12 10 9 14 14 C 1.46899 * 111.00435 * 159.71499 * 13 12 10 15 15 C 1.50696 * 109.47368 * 189.99994 * 14 13 12 16 16 O 1.21295 * 119.99831 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00006 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99954 * 179.97438 * 17 15 14 19 19 H 1.07995 * 120.00058 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99883 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00235 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99948 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47458 * 59.99870 * 22 20 18 24 24 H 1.48497 * 109.47383 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47190 * 299.99885 * 22 20 18 26 26 C 1.47905 * 105.81811 * 39.20487 * 13 12 10 27 27 C 1.53995 * 107.05926 * 334.67112 * 26 13 12 28 28 H 1.09001 * 110.30745 * 120.14333 * 27 26 13 29 29 O 1.42901 * 110.30846 * 242.31021 * 27 26 13 30 30 C 1.42895 * 114.00052 * 265.71331 * 29 27 26 31 31 H 1.09000 * 109.46927 * 59.99869 * 1 2 3 32 32 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47306 * 299.99810 * 1 2 3 34 34 H 1.09000 * 109.47306 * 240.00190 * 2 1 3 35 35 H 1.08996 * 109.47287 * 119.99816 * 2 1 3 36 36 H 1.08997 * 109.47374 * 59.99540 * 6 5 3 37 37 H 1.09001 * 109.47118 * 179.97438 * 6 5 3 38 38 H 1.09002 * 109.47082 * 300.00110 * 6 5 3 39 39 H 0.97005 * 120.00514 * 0.02562 * 9 7 3 40 40 H 1.09007 * 110.66760 * 322.65219 * 12 10 9 41 41 H 1.08999 * 110.67225 * 85.61866 * 12 10 9 42 42 H 1.08999 * 109.47278 * 310.00377 * 14 13 12 43 43 H 1.09007 * 109.46549 * 70.00037 * 14 13 12 44 44 H 0.96998 * 120.00212 * 359.97438 * 17 15 14 45 45 H 0.97000 * 120.00089 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.91697 * 94.02386 * 26 13 12 47 47 H 1.09007 * 109.91442 * 215.12279 * 26 13 12 48 48 H 1.09001 * 109.47007 * 60.00202 * 30 29 27 49 49 H 1.08996 * 109.47304 * 179.97438 * 30 29 27 50 50 H 1.09001 * 109.47387 * 300.00160 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 1.4558 3.4903 -1.1003 7 6 3.5419 1.4444 0.1239 8 8 4.2250 1.8612 -0.7875 9 7 4.1259 0.9829 1.2473 10 6 5.5860 0.9852 1.3680 11 1 6.0096 1.8695 0.8919 12 6 6.1884 -0.3063 0.7600 13 7 7.4884 -0.4400 1.4659 14 6 7.9876 -1.8197 1.3930 15 6 9.1684 -1.9760 2.3162 16 8 9.5563 -1.0309 2.9701 17 7 9.7941 -3.1657 2.4144 18 6 10.8687 -3.3078 3.2538 19 1 11.2136 -2.4665 3.8367 20 6 11.5135 -4.5344 3.3555 21 7 11.0935 -5.5582 2.6467 22 14 12.9772 -4.7283 4.4998 23 1 12.5602 -4.4256 5.8925 24 1 13.4814 -6.1231 4.4266 25 1 14.0532 -3.7903 4.0904 26 6 7.2290 -0.0436 2.8670 27 6 6.0124 0.9004 2.8516 28 1 5.2044 0.4860 3.4545 29 8 6.3815 2.1931 3.3361 30 6 6.1390 2.3817 4.7317 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.3767 3.9645 -0.7609 37 1 1.1722 3.9004 -2.0696 38 1 0.6617 3.6808 -0.3783 39 1 3.5796 0.6491 1.9761 40 1 5.5482 -1.1640 0.9671 41 1 6.3404 -0.1917 -0.3133 42 1 7.1979 -2.5082 1.6935 43 1 8.2937 -2.0417 0.3707 44 1 9.4842 -3.9214 1.8912 45 1 11.5439 -6.4144 2.7174 46 1 7.0070 -0.9257 3.4675 47 1 8.0985 0.4731 3.2737 48 1 6.7103 1.6493 5.3020 49 1 6.4459 3.3867 5.0212 50 1 5.0762 2.2528 4.9365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211994800.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:12 Heat of formation + Delta-G solvation = -147.459685 kcal Electronic energy + Delta-G solvation = -31004.495962 eV Core-core repulsion = 26646.568887 eV Total energy + Delta-G solvation = -4357.927074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.60187 -39.48205 -38.13957 -37.60661 -36.46031 -34.74605 -33.99457 -33.64609 -31.34181 -30.54711 -28.64139 -27.88216 -27.00133 -26.41241 -25.69446 -24.14311 -22.56770 -21.43705 -21.17367 -20.51223 -19.20979 -18.05039 -17.87859 -17.40747 -16.80557 -16.32038 -15.98503 -15.60445 -15.44367 -15.26189 -14.80004 -14.75858 -14.46408 -14.42860 -14.34912 -14.14518 -13.79291 -13.65111 -13.22856 -13.03813 -12.85888 -12.46294 -12.35908 -12.23970 -12.02554 -11.90999 -11.74757 -11.58689 -11.55440 -11.47462 -11.23895 -11.19084 -10.95273 -10.89204 -10.75752 -10.45506 -10.23745 -9.79804 -9.53111 -9.48386 -9.24827 -8.43699 -8.03024 -7.95108 -6.43823 -3.84801 2.35259 2.68610 3.18338 3.24467 3.28677 3.38820 3.66057 3.87176 4.05244 4.22476 4.27928 4.43083 4.47489 4.55123 4.70130 4.80949 4.85551 4.93067 5.06092 5.07927 5.10734 5.18603 5.22096 5.25955 5.30299 5.35370 5.39713 5.41050 5.50946 5.62124 5.64933 5.66612 5.77654 5.81994 5.84706 5.94143 6.02226 6.18917 6.24578 6.53591 6.62866 7.03800 7.15964 7.22657 7.25497 7.52991 7.98809 8.03091 8.58794 9.15327 9.51117 10.02554 10.73728 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.002209 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.366784 B =12673.403475 C =13512.195021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.075 3.925 4 H 0.086 0.914 5 O -0.355 6.355 6 C 0.029 3.971 7 C 0.490 3.510 8 O -0.516 6.516 9 N -0.721 5.721 10 C 0.145 3.855 11 H 0.115 0.885 12 C 0.027 3.973 13 N -0.487 5.487 14 C 0.036 3.964 15 C 0.441 3.559 16 O -0.580 6.580 17 N -0.561 5.561 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.033 3.967 27 C 0.070 3.930 28 H 0.067 0.933 29 O -0.372 6.372 30 C 0.030 3.970 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.397 0.603 40 H 0.047 0.953 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.094 0.906 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.047 0.953 47 H 0.116 0.884 48 H 0.047 0.953 49 H 0.086 0.914 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.516 11.278 -1.237 26.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C 0.013 3.987 4 H 0.103 0.897 5 O -0.272 6.272 6 C -0.068 4.068 7 C 0.275 3.725 8 O -0.390 6.390 9 N -0.375 5.375 10 C 0.040 3.960 11 H 0.133 0.867 12 C -0.102 4.102 13 N -0.212 5.212 14 C -0.096 4.096 15 C 0.226 3.774 16 O -0.465 6.465 17 N -0.198 5.198 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.198 1.198 26 C -0.095 4.095 27 C 0.011 3.989 28 H 0.085 0.915 29 O -0.290 6.290 30 C -0.067 4.067 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.060 0.940 39 H 0.231 0.769 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.226 0.774 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.134 0.866 48 H 0.065 0.935 49 H 0.104 0.896 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -22.218 12.400 -2.023 25.525 hybrid contribution -0.322 -1.482 1.430 2.085 sum -22.540 10.918 -0.593 25.052 Atomic orbital electron populations 1.21727 0.94308 1.02245 1.02391 1.21602 0.97395 0.92741 1.03787 1.22124 0.90560 0.96566 0.89408 0.89667 1.87998 1.87983 1.20970 1.30254 1.22874 0.99821 0.81285 1.02800 1.21426 0.91255 0.77538 0.82286 1.90748 1.64935 1.44972 1.38323 1.46069 1.07256 1.65401 1.18810 1.21912 0.78960 1.00337 0.94773 0.86746 1.23615 0.90319 0.95734 1.00577 1.64556 1.23374 1.21972 1.11302 1.22138 0.97089 0.88959 1.01364 1.19696 0.86659 0.84237 0.86806 1.90501 1.67967 1.39183 1.48802 1.41843 1.28395 1.09952 1.39583 1.19647 1.06204 0.97349 1.19713 0.87935 1.25270 0.99419 0.95054 0.98181 1.69602 1.41807 1.01953 1.40866 0.85911 0.80945 0.77171 0.80153 1.19952 1.20973 1.19831 1.23389 0.98096 0.97693 0.90306 1.23338 0.96741 0.85084 0.93745 0.91468 1.87990 1.85340 1.31787 1.23872 1.22805 0.99207 1.02405 0.82232 0.91694 0.92077 0.92762 0.90118 0.90134 0.93564 0.89146 0.93990 0.76852 0.93479 0.88992 0.93281 0.88828 0.77439 0.91783 0.93451 0.86559 0.93478 0.89581 0.94480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.81 37.16 0.36 -0.45 16 2 C -0.12 -0.78 5.61 -26.73 -0.15 -0.93 16 3 C 0.08 0.63 2.51 -27.88 -0.07 0.56 16 4 H 0.09 0.50 7.79 -51.93 -0.40 0.10 16 5 O -0.36 -3.67 9.42 -55.09 -0.52 -4.19 16 6 C 0.03 0.22 10.81 101.05 1.09 1.32 16 7 C 0.49 5.60 7.13 -10.99 -0.08 5.52 16 8 O -0.52 -8.28 16.23 -14.30 -0.23 -8.52 16 9 N -0.72 -7.03 5.10 -52.00 -0.27 -7.29 16 10 C 0.15 1.88 3.08 -66.07 -0.20 1.67 16 11 H 0.11 1.80 7.64 -51.93 -0.40 1.40 16 12 C 0.03 0.38 6.24 -1.90 -0.01 0.36 16 13 N -0.49 -8.44 5.26 -231.88 -1.22 -9.66 16 14 C 0.04 0.65 5.48 -4.98 -0.03 0.63 16 15 C 0.44 10.33 7.35 -10.99 -0.08 10.25 16 16 O -0.58 -15.35 13.37 5.54 0.07 -15.27 16 17 N -0.56 -14.13 5.29 -10.97 -0.06 -14.19 16 18 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 19 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 22 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 26 C 0.03 0.56 4.89 -2.75 -0.01 0.55 16 27 C 0.07 0.91 3.21 -25.38 -0.08 0.82 16 28 H 0.07 0.68 7.39 -51.93 -0.38 0.29 16 29 O -0.37 -5.16 10.30 -35.23 -0.36 -5.53 16 30 C 0.03 0.31 10.85 101.05 1.10 1.41 16 31 H 0.06 0.41 7.82 -51.93 -0.41 0.01 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.40 7.77 -51.93 -0.40 -0.01 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.04 0.23 8.09 -51.93 -0.42 -0.19 16 39 H 0.40 2.58 8.04 -40.82 -0.33 2.26 16 40 H 0.05 0.58 7.85 -51.92 -0.41 0.17 16 41 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 42 H 0.05 0.79 7.89 -51.93 -0.41 0.38 16 43 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 44 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.05 0.80 7.59 -51.93 -0.39 0.41 16 47 H 0.12 2.37 6.56 -51.93 -0.34 2.03 16 48 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.04 0.30 8.11 -51.93 -0.42 -0.12 16 LS Contribution 410.23 15.07 6.18 6.18 Total: -1.00 -34.55 410.23 -7.46 -42.00 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -8.35 Total: 10.41 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 1.60 Total: 13.77 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.82 Total: -54.80 kcal Atomic # 8 Polarization: -32.46 SS G_CDS: -1.04 Total: -33.50 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.55 -7.46 -42.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211994800.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.456 kcal (2) G-P(sol) polarization free energy of solvation -34.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds