Wall clock time and date at job start Wed Apr 1 2020 01:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46754 * 2 1 4 4 H 1.09002 * 109.47070 * 55.00009 * 3 2 1 5 5 O 1.42898 * 109.47113 * 294.99879 * 3 2 1 6 6 C 1.42902 * 113.99874 * 150.00334 * 5 3 2 7 7 C 1.50703 * 109.46966 * 174.99919 * 3 2 1 8 8 O 1.21282 * 120.00069 * 114.99802 * 7 3 2 9 9 N 1.34770 * 119.99967 * 295.00335 * 7 3 2 10 10 C 1.46504 * 120.00306 * 180.02562 * 9 7 3 11 11 H 1.09005 * 110.64324 * 36.69125 * 10 9 7 12 12 C 1.54935 * 110.72174 * 273.54749 * 10 9 7 13 13 N 1.48534 * 103.22776 * 204.22487 * 12 10 9 14 14 C 1.46899 * 111.00435 * 159.71499 * 13 12 10 15 15 C 1.50696 * 109.47368 * 189.99994 * 14 13 12 16 16 O 1.21295 * 119.99831 * 359.97438 * 15 14 13 17 17 N 1.34773 * 120.00006 * 180.02562 * 15 14 13 18 18 C 1.37099 * 119.99954 * 179.97438 * 17 15 14 19 19 H 1.07995 * 120.00058 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99883 * 179.97438 * 18 17 15 21 21 N 1.31408 * 120.00235 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99948 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47458 * 59.99870 * 22 20 18 24 24 H 1.48497 * 109.47383 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47190 * 299.99885 * 22 20 18 26 26 C 1.47905 * 105.81811 * 39.20487 * 13 12 10 27 27 C 1.53995 * 107.05926 * 334.67112 * 26 13 12 28 28 H 1.09001 * 110.30745 * 120.14333 * 27 26 13 29 29 O 1.42901 * 110.30846 * 242.31021 * 27 26 13 30 30 C 1.42895 * 114.00052 * 265.71331 * 29 27 26 31 31 H 1.09000 * 109.46927 * 59.99869 * 1 2 3 32 32 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47306 * 299.99810 * 1 2 3 34 34 H 1.09000 * 109.47306 * 240.00190 * 2 1 3 35 35 H 1.08996 * 109.47287 * 119.99816 * 2 1 3 36 36 H 1.08997 * 109.47374 * 59.99540 * 6 5 3 37 37 H 1.09001 * 109.47118 * 179.97438 * 6 5 3 38 38 H 1.09002 * 109.47082 * 300.00110 * 6 5 3 39 39 H 0.97005 * 120.00514 * 0.02562 * 9 7 3 40 40 H 1.09007 * 110.66760 * 322.65219 * 12 10 9 41 41 H 1.08999 * 110.67225 * 85.61866 * 12 10 9 42 42 H 1.08999 * 109.47278 * 310.00377 * 14 13 12 43 43 H 1.09007 * 109.46549 * 70.00037 * 14 13 12 44 44 H 0.96998 * 120.00212 * 359.97438 * 17 15 14 45 45 H 0.97000 * 120.00089 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.91697 * 94.02386 * 26 13 12 47 47 H 1.09007 * 109.91442 * 215.12279 * 26 13 12 48 48 H 1.09001 * 109.47007 * 60.00202 * 30 29 27 49 49 H 1.08996 * 109.47304 * 179.97438 * 30 29 27 50 50 H 1.09001 * 109.47387 * 300.00160 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2210 6 6 1.4558 3.4903 -1.1003 7 6 3.5419 1.4444 0.1239 8 8 4.2250 1.8612 -0.7875 9 7 4.1259 0.9829 1.2473 10 6 5.5860 0.9852 1.3680 11 1 6.0096 1.8695 0.8919 12 6 6.1884 -0.3063 0.7600 13 7 7.4884 -0.4400 1.4659 14 6 7.9876 -1.8197 1.3930 15 6 9.1684 -1.9760 2.3162 16 8 9.5563 -1.0309 2.9701 17 7 9.7941 -3.1657 2.4144 18 6 10.8687 -3.3078 3.2538 19 1 11.2136 -2.4665 3.8367 20 6 11.5135 -4.5344 3.3555 21 7 11.0935 -5.5582 2.6467 22 14 12.9772 -4.7283 4.4998 23 1 12.5602 -4.4256 5.8925 24 1 13.4814 -6.1231 4.4266 25 1 14.0532 -3.7903 4.0904 26 6 7.2290 -0.0436 2.8670 27 6 6.0124 0.9004 2.8516 28 1 5.2044 0.4860 3.4545 29 8 6.3815 2.1931 3.3361 30 6 6.1390 2.3817 4.7317 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.3767 3.9645 -0.7609 37 1 1.1722 3.9004 -2.0696 38 1 0.6617 3.6808 -0.3783 39 1 3.5796 0.6491 1.9761 40 1 5.5482 -1.1640 0.9671 41 1 6.3404 -0.1917 -0.3133 42 1 7.1979 -2.5082 1.6935 43 1 8.2937 -2.0417 0.3707 44 1 9.4842 -3.9214 1.8912 45 1 11.5439 -6.4144 2.7174 46 1 7.0070 -0.9257 3.4675 47 1 8.0985 0.4731 3.2737 48 1 6.7103 1.6493 5.3020 49 1 6.4459 3.3867 5.0212 50 1 5.0762 2.2528 4.9365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211994800.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:11 Heat of formation + Delta-G solvation = -176.088498 kcal Electronic energy + Delta-G solvation = -31005.737400 eV Core-core repulsion = 26646.568887 eV Total energy + Delta-G solvation = -4359.168513 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.59269 -40.69174 -39.68113 -38.43121 -37.68659 -36.06226 -35.56002 -34.40217 -33.32676 -31.76656 -29.61628 -28.84835 -28.12954 -27.28844 -26.83133 -25.73577 -23.21491 -22.60455 -22.26266 -21.41552 -21.01016 -19.87708 -18.86493 -18.27311 -17.82012 -17.68431 -17.18233 -16.66604 -16.58293 -16.43749 -16.20585 -15.88740 -15.75504 -15.57443 -15.40223 -15.08705 -14.94994 -14.65893 -14.58310 -14.23173 -13.86896 -13.51077 -13.45787 -13.41591 -13.27618 -13.00845 -12.95646 -12.91087 -12.58960 -12.45735 -12.43839 -12.37356 -12.12894 -12.03729 -11.85543 -11.70859 -11.60514 -11.49967 -10.78266 -10.37490 -10.34204 -10.12166 -10.02037 -9.39344 -8.47540 -5.96277 1.38649 1.41089 1.48899 1.51871 1.81711 2.01945 2.27771 2.66993 2.75315 2.90747 3.17137 3.20075 3.48884 3.54818 3.69966 3.87862 3.91207 3.95939 4.16637 4.20734 4.23252 4.37184 4.38585 4.43943 4.44767 4.50777 4.52259 4.55472 4.59056 4.61554 4.72085 4.82779 4.83894 4.85246 4.87855 5.11800 5.13060 5.20260 5.27488 5.39956 5.45734 5.76855 5.84105 6.00271 6.03366 6.21324 6.47364 6.58781 7.11216 7.16806 7.53524 8.09084 8.69563 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.002209 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.366784 B =12673.403475 C =13512.195021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.078 3.922 4 H 0.119 0.881 5 O -0.380 6.380 6 C 0.025 3.975 7 C 0.488 3.512 8 O -0.570 6.570 9 N -0.702 5.702 10 C 0.155 3.845 11 H 0.082 0.918 12 C 0.033 3.967 13 N -0.513 5.513 14 C 0.048 3.952 15 C 0.438 3.562 16 O -0.614 6.614 17 N -0.571 5.571 18 C -0.332 4.332 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.993 3.007 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.274 1.274 26 C 0.037 3.963 27 C 0.083 3.917 28 H 0.107 0.893 29 O -0.398 6.398 30 C 0.024 3.976 31 H 0.051 0.949 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.029 0.971 37 H 0.096 0.904 38 H 0.069 0.931 39 H 0.418 0.582 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.037 0.963 49 H 0.096 0.904 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.034 10.705 -0.136 28.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C 0.017 3.983 4 H 0.136 0.864 5 O -0.298 6.298 6 C -0.071 4.071 7 C 0.275 3.725 8 O -0.447 6.447 9 N -0.357 5.357 10 C 0.049 3.951 11 H 0.100 0.900 12 C -0.095 4.095 13 N -0.238 5.238 14 C -0.083 4.083 15 C 0.226 3.774 16 O -0.501 6.501 17 N -0.208 5.208 18 C -0.462 4.462 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.195 1.195 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.091 4.091 27 C 0.024 3.976 28 H 0.125 0.875 29 O -0.316 6.316 30 C -0.072 4.072 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.122 0.878 36 H 0.048 0.952 37 H 0.115 0.885 38 H 0.088 0.912 39 H 0.256 0.744 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.126 0.874 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.062 0.938 47 H 0.090 0.910 48 H 0.056 0.944 49 H 0.114 0.886 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.785 11.811 -0.903 27.470 hybrid contribution 0.450 -1.226 1.078 1.694 sum -24.334 10.584 0.174 26.537 Atomic orbital electron populations 1.21703 0.93202 1.02795 1.02611 1.21657 0.98274 0.91413 1.03965 1.22327 0.88011 0.98003 0.89957 0.86369 1.87975 1.87866 1.22152 1.31766 1.23002 0.99894 0.80172 1.04069 1.22146 0.92580 0.76179 0.81572 1.90731 1.66334 1.47387 1.40281 1.45834 1.05908 1.64768 1.19202 1.21539 0.80702 0.98473 0.94422 0.90001 1.23581 0.89134 0.97192 0.99623 1.64444 1.25844 1.21485 1.12036 1.22018 0.95492 0.90352 1.00461 1.20651 0.87266 0.83051 0.86450 1.90495 1.69206 1.40167 1.50204 1.41901 1.28403 1.10749 1.39754 1.19609 1.08037 0.97374 1.21159 0.90278 1.26041 1.01576 0.94339 0.99316 1.69663 1.42660 1.02267 1.41434 0.84993 0.77559 0.77581 0.78234 1.19524 1.19487 1.19924 1.23200 0.98185 0.97976 0.89746 1.23224 0.95850 0.84291 0.94242 0.87524 1.87967 1.85828 1.31958 1.25891 1.23018 1.01101 1.02814 0.80296 0.92963 0.91388 0.91051 0.92097 0.87824 0.95227 0.88512 0.91207 0.74375 0.90826 0.89979 0.90376 0.87427 0.76979 0.91266 0.93842 0.90988 0.94375 0.88566 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.81 71.98 0.71 -0.45 16 2 C -0.12 -1.21 5.61 30.60 0.17 -1.04 16 3 C 0.08 1.12 2.51 29.85 0.08 1.20 16 4 H 0.12 0.92 7.79 -2.39 -0.02 0.90 16 5 O -0.38 -7.40 9.42 -129.99 -1.22 -8.62 16 6 C 0.02 0.35 10.81 113.37 1.23 1.58 16 7 C 0.49 10.47 7.13 87.66 0.63 11.10 16 8 O -0.57 -18.50 16.23 15.95 0.26 -18.24 16 9 N -0.70 -11.96 5.10 -436.83 -2.23 -14.19 16 10 C 0.16 3.85 3.08 46.19 0.14 3.99 16 11 H 0.08 2.64 7.64 -2.38 -0.02 2.62 16 12 C 0.03 0.89 6.24 86.65 0.54 1.43 16 13 N -0.51 -17.69 5.26 -887.54 -4.67 -22.36 16 14 C 0.05 1.71 5.48 85.56 0.47 2.18 16 15 C 0.44 20.96 7.35 87.66 0.64 21.61 16 16 O -0.61 -33.81 13.37 -3.08 -0.04 -33.85 16 17 N -0.57 -29.29 5.29 -306.99 -1.62 -30.92 16 18 C -0.33 -18.82 9.68 84.04 0.81 -18.00 16 19 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 21 N -0.92 -49.48 13.05 21.66 0.28 -49.20 16 22 Si 0.99 42.86 29.55 68.60 2.03 44.88 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 C 0.04 1.26 4.89 86.45 0.42 1.68 16 27 C 0.08 2.03 3.21 31.47 0.10 2.13 16 28 H 0.11 1.75 7.39 -2.39 -0.02 1.74 16 29 O -0.40 -10.78 10.30 -148.98 -1.53 -12.31 16 30 C 0.02 0.45 10.85 113.37 1.23 1.68 16 31 H 0.05 0.56 7.82 -2.39 -0.02 0.54 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.10 0.59 7.77 -2.39 -0.02 0.57 16 36 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 0.58 8.09 -2.39 -0.02 0.56 16 39 H 0.42 3.68 8.04 -92.70 -0.74 2.94 16 40 H 0.07 1.59 7.85 -2.38 -0.02 1.57 16 41 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.08 2.34 7.89 -2.39 -0.02 2.32 16 43 H 0.11 3.53 8.14 -2.38 -0.02 3.51 16 44 H 0.40 19.31 7.90 -92.71 -0.73 18.57 16 45 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 46 H 0.04 1.46 7.59 -2.39 -0.02 1.44 16 47 H 0.07 3.08 6.56 -2.38 -0.02 3.06 16 48 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.07 0.87 8.11 -2.39 -0.02 0.85 16 Total: -1.00 -79.21 410.23 -1.65 -80.85 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: -0.52 Total: 35.10 kcal Atomic # 6 Polarization: 21.22 SS G_CDS: 7.63 Total: 28.85 kcal Atomic # 7 Polarization: -108.42 SS G_CDS: -8.24 Total: -116.66 kcal Atomic # 8 Polarization: -70.48 SS G_CDS: -2.54 Total: -73.02 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -79.21 -1.65 -80.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211994800.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.237 kcal (2) G-P(sol) polarization free energy of solvation -79.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds