Wall clock time and date at job start Wed Apr 1 2020 02:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99872 * 2 1 4 4 H 1.09007 * 109.46953 * 30.00193 * 3 2 1 5 5 C 1.52993 * 109.47307 * 269.99932 * 3 2 1 6 6 C 1.53001 * 109.46925 * 149.99952 * 3 2 1 7 7 C 1.50709 * 109.47103 * 295.00159 * 6 3 2 8 8 O 1.21280 * 119.99918 * 359.97438 * 7 6 3 9 9 N 1.34774 * 119.99781 * 179.97438 * 7 6 3 10 10 C 1.46498 * 119.99625 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.64533 * 31.85220 * 10 9 7 12 12 C 1.54937 * 110.88045 * 268.58971 * 10 9 7 13 13 N 1.48528 * 103.22723 * 204.15877 * 12 10 9 14 14 C 1.46908 * 110.99856 * 159.72582 * 13 12 10 15 15 C 1.50693 * 109.47111 * 59.24718 * 14 13 12 16 16 O 1.21293 * 120.00340 * 6.16177 * 15 14 13 17 17 N 1.34779 * 119.99879 * 186.15471 * 15 14 13 18 18 C 1.37092 * 120.00300 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99736 * 0.02562 * 18 17 15 20 20 C 1.38953 * 120.00115 * 180.02562 * 18 17 15 21 21 N 1.31421 * 119.99697 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00089 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47011 * 89.99960 * 22 20 18 24 24 H 1.48497 * 109.47206 * 209.99457 * 22 20 18 25 25 H 1.48494 * 109.47064 * 330.00039 * 22 20 18 26 26 C 1.47897 * 105.82203 * 39.20801 * 13 12 10 27 27 C 1.53996 * 107.05841 * 334.66807 * 26 13 12 28 28 H 1.09001 * 110.30466 * 120.14298 * 27 26 13 29 29 O 1.42898 * 110.30601 * 242.20723 * 27 26 13 30 30 C 1.42894 * 114.00054 * 268.54380 * 29 27 26 31 31 H 1.09002 * 109.46996 * 59.99920 * 1 2 3 32 32 H 1.08998 * 109.46898 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47167 * 299.99954 * 1 2 3 34 34 H 1.08998 * 109.47386 * 300.00192 * 5 3 2 35 35 H 1.08998 * 109.47349 * 60.00625 * 5 3 2 36 36 H 1.09004 * 109.46943 * 179.97438 * 5 3 2 37 37 H 1.09002 * 109.47272 * 175.00704 * 6 3 2 38 38 H 1.09001 * 109.47369 * 55.00007 * 6 3 2 39 39 H 0.96999 * 120.00548 * 0.02562 * 9 7 6 40 40 H 1.09007 * 110.66328 * 85.72354 * 12 10 9 41 41 H 1.09002 * 110.66713 * 322.59837 * 12 10 9 42 42 H 1.08999 * 109.46793 * 179.25463 * 14 13 12 43 43 H 1.08997 * 109.46721 * 299.24843 * 14 13 12 44 44 H 0.96996 * 119.99713 * 0.02562 * 17 15 14 45 45 H 0.96999 * 119.99189 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.91424 * 94.02219 * 26 13 12 47 47 H 1.09007 * 109.91901 * 215.31305 * 26 13 12 48 48 H 1.09003 * 109.46939 * 180.02562 * 30 29 27 49 49 H 1.08999 * 109.47815 * 300.00245 * 30 29 27 50 50 H 1.09003 * 109.47017 * 60.00856 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 3.3589 1.2632 0.7213 7 6 3.1416 0.9235 2.1734 8 8 2.0185 0.7343 2.5904 9 7 4.1952 0.8299 3.0085 10 6 3.9839 0.5002 4.4202 11 1 3.1193 -0.1532 4.5370 12 6 3.8181 1.7860 5.2687 13 7 4.2164 1.3479 6.6309 14 6 4.5854 2.4981 7.4670 15 6 3.4144 3.4410 7.5693 16 8 2.3416 3.1293 7.0968 17 7 3.5590 4.6306 8.1861 18 6 2.4938 5.4887 8.2788 19 1 1.5387 5.2111 7.8580 20 6 2.6431 6.7153 8.9142 21 7 1.6218 7.5376 9.0035 22 14 4.2952 7.1956 9.6415 23 1 5.0986 7.9092 8.6164 24 1 4.0815 8.0858 10.8106 25 1 5.0190 5.9737 10.0753 26 6 5.3677 0.4390 6.4417 27 6 5.2483 -0.1523 5.0248 28 1 6.1266 0.1045 4.4325 29 8 5.0933 -1.5713 5.0910 30 6 6.3249 -2.2937 5.0357 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 2.8829 1.0775 -1.9563 35 1 1.2569 1.8015 -1.9563 36 1 2.6606 2.7674 -1.4423 37 1 3.8427 2.2370 0.6445 38 1 3.9931 0.5051 0.2618 39 1 5.0934 0.9816 2.6752 40 1 2.7809 2.1213 5.2603 41 1 4.4808 2.5728 4.9085 42 1 4.8601 2.1502 8.4627 43 1 5.4317 3.0173 7.0173 44 1 4.4169 4.8800 8.5637 45 1 1.7261 8.3941 9.4468 46 1 6.2998 0.9964 6.5342 47 1 5.3351 -0.3607 7.1817 48 1 6.1216 -3.3632 5.0910 49 1 6.8361 -2.0694 4.0995 50 1 6.9565 -1.9998 5.8741 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212011305.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:09 Heat of formation + Delta-G solvation = -141.563318 kcal Electronic energy + Delta-G solvation = -31042.067661 eV Core-core repulsion = 26684.396272 eV Total energy + Delta-G solvation = -4357.671389 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.36035 -39.32449 -38.29252 -37.82493 -36.56934 -34.43687 -33.87897 -33.02817 -31.69211 -30.66602 -28.77153 -27.77310 -27.16632 -26.58664 -25.96642 -24.00966 -22.19227 -21.22778 -20.99182 -20.37117 -19.37222 -18.31249 -17.58962 -17.00989 -16.96071 -16.34327 -16.02409 -15.53624 -15.29135 -15.20556 -15.01554 -14.92982 -14.73519 -14.35902 -14.20306 -13.86064 -13.49687 -13.28626 -13.10816 -13.00554 -12.79695 -12.53146 -12.50815 -12.38831 -12.14548 -12.09024 -11.99816 -11.75512 -11.55828 -11.54580 -11.39735 -11.10731 -10.89450 -10.73956 -10.60021 -10.01232 -9.96371 -9.78217 -9.65870 -9.55037 -9.07235 -8.55601 -8.20040 -8.08571 -6.30577 -3.81899 2.68676 2.93234 3.01737 3.05234 3.14083 3.55046 3.67226 3.73273 3.97408 4.10073 4.37568 4.54330 4.60250 4.65653 4.72261 4.82334 4.95579 5.04827 5.10363 5.13040 5.20102 5.21260 5.24542 5.25916 5.31007 5.35339 5.43529 5.45472 5.46989 5.48323 5.57954 5.70793 5.73091 5.74800 5.78176 5.90544 5.91749 6.06387 6.34679 6.48607 6.94285 7.04698 7.09255 7.12133 7.42525 7.58383 8.15157 8.25466 8.60459 8.95937 9.42590 9.83520 10.82605 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009333 B = 0.002877 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.258319 B = 9730.837637 C =11939.904243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.378 6.378 3 C 0.098 3.902 4 H 0.071 0.929 5 C -0.174 4.174 6 C -0.139 4.139 7 C 0.516 3.484 8 O -0.518 6.518 9 N -0.727 5.727 10 C 0.145 3.855 11 H 0.117 0.883 12 C 0.034 3.966 13 N -0.485 5.485 14 C 0.035 3.965 15 C 0.450 3.550 16 O -0.555 6.555 17 N -0.591 5.591 18 C -0.303 4.303 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.879 3.121 23 H -0.272 1.272 24 H -0.276 1.276 25 H -0.269 1.269 26 C 0.015 3.985 27 C 0.075 3.925 28 H 0.070 0.930 29 O -0.371 6.371 30 C 0.030 3.970 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.395 0.605 40 H 0.118 0.882 41 H 0.042 0.958 42 H 0.095 0.905 43 H 0.048 0.952 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.050 0.950 47 H 0.092 0.908 48 H 0.086 0.914 49 H 0.039 0.961 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.393 -14.538 -16.721 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.297 6.297 3 C 0.040 3.960 4 H 0.089 0.911 5 C -0.232 4.232 6 C -0.179 4.179 7 C 0.302 3.698 8 O -0.392 6.392 9 N -0.379 5.379 10 C 0.039 3.961 11 H 0.135 0.865 12 C -0.095 4.095 13 N -0.210 5.210 14 C -0.097 4.097 15 C 0.236 3.764 16 O -0.436 6.436 17 N -0.231 5.231 18 C -0.432 4.432 19 H 0.138 0.862 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.114 4.114 27 C 0.015 3.985 28 H 0.088 0.912 29 O -0.289 6.289 30 C -0.067 4.067 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.229 0.771 40 H 0.136 0.864 41 H 0.060 0.940 42 H 0.113 0.887 43 H 0.066 0.934 44 H 0.202 0.798 45 H 0.084 0.916 46 H 0.068 0.932 47 H 0.110 0.890 48 H 0.105 0.895 49 H 0.058 0.942 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 11.222 -15.204 -16.377 25.006 hybrid contribution 2.720 1.455 0.235 3.094 sum 13.942 -13.749 -16.142 25.377 Atomic orbital electron populations 1.22709 0.80877 1.02447 0.99913 1.87862 1.19945 1.26910 1.94971 1.21787 0.93607 0.86053 0.94596 0.91069 1.22296 1.02610 1.01588 0.96691 1.21849 0.99281 1.04319 0.92471 1.20523 0.84819 0.76651 0.87782 1.90751 1.23062 1.47791 1.77614 1.45922 1.09618 1.73131 1.09254 1.21933 0.98358 0.96415 0.79372 0.86510 1.23705 1.04783 0.94349 0.86658 1.64492 1.30267 1.14589 1.11655 1.22151 0.96522 0.91781 0.99257 1.19585 0.89749 0.82796 0.84297 1.90567 1.27795 1.75257 1.49994 1.42199 1.12305 1.16273 1.52292 1.19437 0.92529 0.96042 1.35206 0.86228 1.25037 0.97556 0.95944 0.97645 1.69629 1.29871 1.09641 1.42991 0.86676 0.83821 0.79084 0.79831 1.19732 1.20163 1.19489 1.23447 0.93160 0.97811 0.97023 1.23217 0.97681 0.81853 0.95717 0.91220 1.88041 1.29615 1.16738 1.94458 1.22806 0.86859 0.97324 0.99725 0.94711 0.90050 0.93244 0.91791 0.92138 0.91449 0.87646 0.88165 0.77086 0.86376 0.93998 0.88737 0.93363 0.79777 0.91632 0.93209 0.88997 0.89523 0.94230 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.82 101.05 1.09 1.49 16 2 O -0.38 -4.75 9.58 -49.64 -0.48 -5.23 16 3 C 0.10 1.02 2.27 -26.73 -0.06 0.96 16 4 H 0.07 0.84 7.60 -51.92 -0.39 0.44 16 5 C -0.17 -1.31 9.53 37.15 0.35 -0.96 16 6 C -0.14 -1.25 5.41 -27.88 -0.15 -1.40 16 7 C 0.52 6.76 7.71 -10.98 -0.08 6.68 16 8 O -0.52 -9.27 15.06 -8.85 -0.13 -9.40 16 9 N -0.73 -8.13 5.18 -52.00 -0.27 -8.40 16 10 C 0.14 2.02 3.16 -66.07 -0.21 1.82 16 11 H 0.12 2.04 7.49 -51.93 -0.39 1.65 16 12 C 0.03 0.56 5.28 -1.90 -0.01 0.55 16 13 N -0.49 -8.04 5.11 -231.89 -1.18 -9.22 16 14 C 0.03 0.59 5.30 -4.98 -0.03 0.56 16 15 C 0.45 10.33 7.41 -10.99 -0.08 10.25 16 16 O -0.55 -15.09 13.87 5.55 0.08 -15.01 16 17 N -0.59 -14.12 5.09 -10.97 -0.06 -14.18 16 18 C -0.30 -8.63 10.16 -14.93 -0.15 -8.78 16 19 H 0.12 3.90 7.39 -52.49 -0.39 3.52 16 20 C 0.04 1.13 5.50 -17.46 -0.10 1.03 16 21 N -0.88 -25.87 13.96 55.50 0.77 -25.10 16 22 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.27 -5.38 6.52 56.52 0.37 -5.02 16 26 C 0.01 0.18 6.51 -2.76 -0.02 0.16 16 27 C 0.07 0.84 3.19 -25.37 -0.08 0.76 16 28 H 0.07 0.59 7.45 -51.93 -0.39 0.20 16 29 O -0.37 -4.46 10.30 -35.23 -0.36 -4.82 16 30 C 0.03 0.23 10.86 101.05 1.10 1.33 16 31 H 0.03 0.30 7.87 -51.93 -0.41 -0.11 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.45 7.87 -51.93 -0.41 0.04 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.40 2.94 8.39 -40.82 -0.34 2.60 16 40 H 0.12 2.54 6.43 -51.92 -0.33 2.21 16 41 H 0.04 0.65 8.01 -51.93 -0.42 0.24 16 42 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 43 H 0.05 0.69 7.98 -51.93 -0.41 0.28 16 44 H 0.37 7.71 5.76 -40.82 -0.24 7.48 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.05 0.50 7.68 -51.93 -0.40 0.11 16 47 H 0.09 1.12 7.96 -51.93 -0.41 0.71 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.04 0.26 8.10 -51.93 -0.42 -0.17 16 50 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 407.26 15.07 6.14 6.14 Total: -1.00 -36.99 407.26 -6.95 -43.95 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -8.32 Total: 12.22 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: 1.58 Total: 14.44 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.74 Total: -56.90 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.89 Total: -34.46 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.99 -6.95 -43.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212011305.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.618 kcal (2) G-P(sol) polarization free energy of solvation -36.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds