Wall clock time and date at job start Wed Apr 1 2020 02:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99872 * 2 1 4 4 H 1.09007 * 109.46953 * 30.00193 * 3 2 1 5 5 C 1.52993 * 109.47307 * 269.99932 * 3 2 1 6 6 C 1.53001 * 109.46925 * 149.99952 * 3 2 1 7 7 C 1.50709 * 109.47103 * 295.00159 * 6 3 2 8 8 O 1.21280 * 119.99918 * 359.97438 * 7 6 3 9 9 N 1.34774 * 119.99781 * 179.97438 * 7 6 3 10 10 C 1.46498 * 119.99625 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.64533 * 31.85220 * 10 9 7 12 12 C 1.54937 * 110.88045 * 268.58971 * 10 9 7 13 13 N 1.48528 * 103.22723 * 204.15877 * 12 10 9 14 14 C 1.46908 * 110.99856 * 159.72582 * 13 12 10 15 15 C 1.50693 * 109.47111 * 59.24718 * 14 13 12 16 16 O 1.21293 * 120.00340 * 6.16177 * 15 14 13 17 17 N 1.34779 * 119.99879 * 186.15471 * 15 14 13 18 18 C 1.37092 * 120.00300 * 179.97438 * 17 15 14 19 19 H 1.08000 * 119.99736 * 0.02562 * 18 17 15 20 20 C 1.38953 * 120.00115 * 180.02562 * 18 17 15 21 21 N 1.31421 * 119.99697 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00089 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47011 * 89.99960 * 22 20 18 24 24 H 1.48497 * 109.47206 * 209.99457 * 22 20 18 25 25 H 1.48494 * 109.47064 * 330.00039 * 22 20 18 26 26 C 1.47897 * 105.82203 * 39.20801 * 13 12 10 27 27 C 1.53996 * 107.05841 * 334.66807 * 26 13 12 28 28 H 1.09001 * 110.30466 * 120.14298 * 27 26 13 29 29 O 1.42898 * 110.30601 * 242.20723 * 27 26 13 30 30 C 1.42894 * 114.00054 * 268.54380 * 29 27 26 31 31 H 1.09002 * 109.46996 * 59.99920 * 1 2 3 32 32 H 1.08998 * 109.46898 * 179.97438 * 1 2 3 33 33 H 1.08990 * 109.47167 * 299.99954 * 1 2 3 34 34 H 1.08998 * 109.47386 * 300.00192 * 5 3 2 35 35 H 1.08998 * 109.47349 * 60.00625 * 5 3 2 36 36 H 1.09004 * 109.46943 * 179.97438 * 5 3 2 37 37 H 1.09002 * 109.47272 * 175.00704 * 6 3 2 38 38 H 1.09001 * 109.47369 * 55.00007 * 6 3 2 39 39 H 0.96999 * 120.00548 * 0.02562 * 9 7 6 40 40 H 1.09007 * 110.66328 * 85.72354 * 12 10 9 41 41 H 1.09002 * 110.66713 * 322.59837 * 12 10 9 42 42 H 1.08999 * 109.46793 * 179.25463 * 14 13 12 43 43 H 1.08997 * 109.46721 * 299.24843 * 14 13 12 44 44 H 0.96996 * 119.99713 * 0.02562 * 17 15 14 45 45 H 0.96999 * 119.99189 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.91424 * 94.02219 * 26 13 12 47 47 H 1.09007 * 109.91901 * 215.31305 * 26 13 12 48 48 H 1.09003 * 109.46939 * 180.02562 * 30 29 27 49 49 H 1.08999 * 109.47815 * 300.00245 * 30 29 27 50 50 H 1.09003 * 109.47017 * 60.00856 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 3.3589 1.2632 0.7213 7 6 3.1416 0.9235 2.1734 8 8 2.0185 0.7343 2.5904 9 7 4.1952 0.8299 3.0085 10 6 3.9839 0.5002 4.4202 11 1 3.1193 -0.1532 4.5370 12 6 3.8181 1.7860 5.2687 13 7 4.2164 1.3479 6.6309 14 6 4.5854 2.4981 7.4670 15 6 3.4144 3.4410 7.5693 16 8 2.3416 3.1293 7.0968 17 7 3.5590 4.6306 8.1861 18 6 2.4938 5.4887 8.2788 19 1 1.5387 5.2111 7.8580 20 6 2.6431 6.7153 8.9142 21 7 1.6218 7.5376 9.0035 22 14 4.2952 7.1956 9.6415 23 1 5.0986 7.9092 8.6164 24 1 4.0815 8.0858 10.8106 25 1 5.0190 5.9737 10.0753 26 6 5.3677 0.4390 6.4417 27 6 5.2483 -0.1523 5.0248 28 1 6.1266 0.1045 4.4325 29 8 5.0933 -1.5713 5.0910 30 6 6.3249 -2.2937 5.0357 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 2.8829 1.0775 -1.9563 35 1 1.2569 1.8015 -1.9563 36 1 2.6606 2.7674 -1.4423 37 1 3.8427 2.2370 0.6445 38 1 3.9931 0.5051 0.2618 39 1 5.0934 0.9816 2.6752 40 1 2.7809 2.1213 5.2603 41 1 4.4808 2.5728 4.9085 42 1 4.8601 2.1502 8.4627 43 1 5.4317 3.0173 7.0173 44 1 4.4169 4.8800 8.5637 45 1 1.7261 8.3941 9.4468 46 1 6.2998 0.9964 6.5342 47 1 5.3351 -0.3607 7.1817 48 1 6.1216 -3.3632 5.0910 49 1 6.8361 -2.0694 4.0995 50 1 6.9565 -1.9998 5.8741 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212011305.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:07 Heat of formation + Delta-G solvation = -174.877873 kcal Electronic energy + Delta-G solvation = -31043.512289 eV Core-core repulsion = 26684.396272 eV Total energy + Delta-G solvation = -4359.116016 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.45514 -40.56223 -39.75922 -38.74922 -37.68735 -36.02686 -35.46931 -33.86891 -33.76286 -31.81837 -29.70619 -28.83762 -28.18414 -27.45740 -27.10484 -25.66149 -23.20104 -22.30673 -22.00729 -21.33895 -21.29104 -20.22855 -18.56586 -17.97061 -17.85054 -17.71159 -17.30889 -16.82321 -16.48340 -16.38012 -16.12085 -15.90100 -15.82867 -15.61237 -15.43043 -15.18653 -14.86500 -14.64696 -14.52083 -14.15423 -13.84919 -13.74234 -13.52179 -13.41535 -13.29461 -13.07006 -12.98896 -12.87062 -12.79317 -12.61211 -12.43142 -12.34095 -12.29249 -11.98400 -11.79876 -11.68403 -11.49032 -10.98053 -10.70532 -10.54155 -10.39852 -10.26503 -10.08697 -9.37164 -8.42124 -6.03649 1.29336 1.35029 1.44634 1.67342 1.93466 1.98908 2.22709 2.60518 2.81043 2.86509 3.13520 3.20864 3.47239 3.59619 3.74729 3.85700 3.92057 4.11368 4.15034 4.19970 4.31095 4.31859 4.36929 4.44510 4.44956 4.53809 4.55752 4.59253 4.60730 4.63673 4.71158 4.78619 4.82076 4.89426 4.91119 4.93047 5.03218 5.05240 5.30616 5.37028 5.51333 5.77979 5.88301 6.00574 6.26851 6.27239 6.54265 6.58615 6.87404 7.31217 7.37890 7.96636 8.75925 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.009333 B = 0.002877 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2999.258319 B = 9730.837637 C =11939.904243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.399 6.399 3 C 0.088 3.912 4 H 0.044 0.956 5 C -0.165 4.165 6 C -0.130 4.130 7 C 0.505 3.495 8 O -0.579 6.579 9 N -0.709 5.709 10 C 0.150 3.850 11 H 0.069 0.931 12 C 0.041 3.959 13 N -0.519 5.519 14 C 0.047 3.953 15 C 0.446 3.554 16 O -0.609 6.609 17 N -0.589 5.589 18 C -0.329 4.329 19 H 0.050 0.950 20 C -0.017 4.017 21 N -0.936 5.936 22 Si 0.968 3.032 23 H -0.254 1.254 24 H -0.276 1.276 25 H -0.229 1.229 26 C 0.017 3.983 27 C 0.087 3.913 28 H 0.113 0.887 29 O -0.402 6.402 30 C 0.022 3.978 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.023 0.977 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.140 0.860 38 H 0.128 0.872 39 H 0.419 0.581 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.125 0.875 43 H 0.091 0.909 44 H 0.391 0.609 45 H 0.279 0.721 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.059 0.941 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.651 -15.013 -17.297 30.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.319 6.319 3 C 0.030 3.970 4 H 0.062 0.938 5 C -0.222 4.222 6 C -0.169 4.169 7 C 0.293 3.707 8 O -0.458 6.458 9 N -0.363 5.363 10 C 0.043 3.957 11 H 0.087 0.913 12 C -0.088 4.088 13 N -0.244 5.244 14 C -0.084 4.084 15 C 0.234 3.766 16 O -0.493 6.493 17 N -0.231 5.231 18 C -0.458 4.458 19 H 0.068 0.932 20 C -0.215 4.215 21 N -0.577 5.577 22 Si 0.788 3.212 23 H -0.179 1.179 24 H -0.201 1.201 25 H -0.152 1.152 26 C -0.110 4.110 27 C 0.028 3.972 28 H 0.131 0.869 29 O -0.320 6.320 30 C -0.073 4.073 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.041 0.959 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.158 0.842 38 H 0.146 0.854 39 H 0.257 0.743 40 H 0.071 0.929 41 H 0.075 0.925 42 H 0.143 0.857 43 H 0.108 0.892 44 H 0.226 0.774 45 H 0.089 0.911 46 H 0.107 0.893 47 H 0.111 0.889 48 H 0.109 0.891 49 H 0.077 0.923 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.556 -15.708 -16.974 29.035 hybrid contribution 0.611 1.519 0.374 1.680 sum 18.166 -14.188 -16.600 28.406 Atomic orbital electron populations 1.22735 0.80572 1.03002 0.99652 1.87810 1.20498 1.28394 1.95170 1.22006 0.93752 0.84753 0.96535 0.93769 1.22223 1.03009 1.02717 0.94262 1.21946 0.99130 1.06916 0.88917 1.21435 0.84185 0.75401 0.89630 1.90739 1.25599 1.50500 1.78929 1.45746 1.10561 1.72060 1.07933 1.21558 0.98762 0.94629 0.80705 0.91305 1.23367 1.01324 0.96007 0.88090 1.64341 1.33550 1.15137 1.11394 1.22109 0.93991 0.90779 1.01487 1.20937 0.91000 0.82885 0.81815 1.90574 1.30878 1.76365 1.51489 1.41992 1.11897 1.16157 1.53085 1.18973 0.91869 0.98148 1.36829 0.93197 1.26177 1.03295 0.94819 0.97224 1.69825 1.33468 1.10418 1.43972 0.85322 0.77005 0.80118 0.78781 1.17877 1.20083 1.15208 1.23545 0.92801 0.97120 0.97558 1.23136 0.96924 0.81646 0.95481 0.86931 1.88018 1.32302 1.17114 1.94604 1.23042 0.85643 0.97206 1.01438 0.92572 0.89164 0.95858 0.90613 0.92331 0.89624 0.84249 0.85408 0.74291 0.92889 0.92512 0.85739 0.89154 0.77364 0.91123 0.89284 0.88902 0.89096 0.92277 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.85 10.82 113.37 1.23 2.08 16 2 O -0.40 -10.35 9.58 -135.21 -1.30 -11.65 16 3 C 0.09 1.83 2.27 30.59 0.07 1.90 16 4 H 0.04 1.13 7.60 -2.38 -0.02 1.11 16 5 C -0.16 -2.19 9.53 71.98 0.69 -1.51 16 6 C -0.13 -2.13 5.41 29.85 0.16 -1.97 16 7 C 0.51 13.55 7.71 87.66 0.68 14.22 16 8 O -0.58 -22.73 15.06 10.74 0.16 -22.56 16 9 N -0.71 -15.20 5.18 -436.83 -2.26 -17.46 16 10 C 0.15 4.24 3.16 46.20 0.15 4.39 16 11 H 0.07 2.63 7.49 -2.39 -0.02 2.61 16 12 C 0.04 1.42 5.28 86.65 0.46 1.88 16 13 N -0.52 -16.62 5.11 -887.57 -4.53 -21.15 16 14 C 0.05 1.47 5.30 85.55 0.45 1.92 16 15 C 0.45 20.79 7.41 87.65 0.65 21.44 16 16 O -0.61 -35.68 13.87 -3.07 -0.04 -35.72 16 17 N -0.59 -28.18 5.09 -306.99 -1.56 -29.74 16 18 C -0.33 -19.69 10.16 84.04 0.85 -18.84 16 19 H 0.05 3.60 7.39 -2.91 -0.02 3.58 16 20 C -0.02 -0.94 5.50 84.93 0.47 -0.48 16 21 N -0.94 -57.34 13.96 21.67 0.30 -57.04 16 22 Si 0.97 38.63 27.74 68.60 1.90 40.54 16 23 H -0.25 -9.48 7.11 99.48 0.71 -8.78 16 24 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.23 -7.59 6.52 99.48 0.65 -6.94 16 26 C 0.02 0.36 6.51 86.45 0.56 0.93 16 27 C 0.09 1.70 3.19 31.47 0.10 1.80 16 28 H 0.11 1.25 7.45 -2.39 -0.02 1.23 16 29 O -0.40 -8.81 10.30 -148.98 -1.53 -10.35 16 30 C 0.02 0.27 10.86 113.37 1.23 1.50 16 31 H 0.06 1.02 7.87 -2.39 -0.02 1.00 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.80 7.87 -2.39 -0.02 0.78 16 36 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.42 4.82 8.39 -92.71 -0.78 4.04 16 40 H 0.05 2.52 6.43 -2.38 -0.02 2.50 16 41 H 0.06 1.71 8.01 -2.39 -0.02 1.69 16 42 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.09 2.09 7.98 -2.39 -0.02 2.08 16 44 H 0.39 15.14 5.76 -92.71 -0.53 14.61 16 45 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 46 H 0.09 1.21 7.68 -2.39 -0.02 1.19 16 47 H 0.09 1.94 7.96 -2.38 -0.02 1.92 16 48 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.06 0.49 8.10 -2.39 -0.02 0.47 16 50 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -95.19 407.26 -1.54 -96.73 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: -0.42 Total: 39.14 kcal Atomic # 6 Polarization: 21.53 SS G_CDS: 7.74 Total: 29.27 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -8.06 Total: -125.40 kcal Atomic # 8 Polarization: -77.57 SS G_CDS: -2.71 Total: -80.28 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 1.90 Total: 40.54 kcal Total: -95.19 -1.54 -96.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212011305.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.146 kcal (2) G-P(sol) polarization free energy of solvation -95.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds