Wall clock time and date at job start Wed Apr 1 2020 02:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99773 * 2 1 4 4 H 1.08994 * 109.46853 * 330.00456 * 3 2 1 5 5 C 1.53009 * 109.46920 * 90.00194 * 3 2 1 6 6 C 1.52995 * 109.46945 * 209.99967 * 3 2 1 7 7 C 1.50699 * 109.47301 * 65.00196 * 6 3 2 8 8 O 1.21281 * 119.99965 * 0.02562 * 7 6 3 9 9 N 1.34779 * 120.00360 * 179.97438 * 7 6 3 10 10 C 1.46493 * 120.00033 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.27708 * 32.91326 * 10 9 7 12 12 C 1.53999 * 110.31022 * 270.71718 * 10 9 7 13 13 N 1.47895 * 107.06228 * 242.31117 * 12 10 9 14 14 C 1.46902 * 111.00089 * 214.15693 * 13 12 10 15 15 C 1.50694 * 109.46898 * 300.98289 * 14 13 12 16 16 O 1.21298 * 120.00330 * 354.03755 * 15 14 13 17 17 N 1.34778 * 120.00061 * 174.04112 * 15 14 13 18 18 C 1.37096 * 120.00376 * 180.02562 * 17 15 14 19 19 H 1.07995 * 119.99532 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00122 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00119 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00000 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46638 * 90.00467 * 22 20 18 24 24 H 1.48503 * 109.47186 * 210.00028 * 22 20 18 25 25 H 1.48493 * 109.47315 * 330.00464 * 22 20 18 26 26 C 1.48535 * 105.82042 * 334.66848 * 13 12 10 27 27 C 1.54602 * 110.30900 * 155.00738 * 10 9 7 28 28 H 1.08991 * 110.72396 * 22.51135 * 27 10 9 29 29 O 1.42901 * 110.71856 * 259.23112 * 27 10 9 30 30 C 1.42904 * 113.99885 * 149.99895 * 29 27 10 31 31 H 1.08997 * 109.46925 * 299.99469 * 1 2 3 32 32 H 1.08998 * 109.47016 * 60.00136 * 1 2 3 33 33 H 1.09003 * 109.46397 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46842 * 300.00192 * 5 3 2 35 35 H 1.08995 * 109.46577 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.46797 * 60.00081 * 5 3 2 37 37 H 1.09006 * 109.47273 * 184.99877 * 6 3 2 38 38 H 1.09003 * 109.47921 * 304.99832 * 6 3 2 39 39 H 0.97001 * 119.99816 * 0.02562 * 9 7 6 40 40 H 1.09001 * 109.91221 * 1.66732 * 12 10 9 41 41 H 1.09000 * 109.91492 * 122.95765 * 12 10 9 42 42 H 1.09002 * 109.47173 * 60.98448 * 14 13 12 43 43 H 1.09002 * 109.47186 * 180.98052 * 14 13 12 44 44 H 0.97003 * 119.99901 * 359.97438 * 17 15 14 45 45 H 0.97003 * 120.00498 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.66697 * 280.77466 * 26 13 12 47 47 H 1.08997 * 110.67161 * 157.63777 * 26 13 12 48 48 H 1.08997 * 109.47028 * 299.99983 * 30 29 27 49 49 H 1.09005 * 109.46975 * 59.99800 * 30 29 27 50 50 H 1.09001 * 109.47017 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7714 1.4426 6 6 3.3588 1.2634 -0.7212 7 6 3.1416 0.9237 -2.1733 8 8 2.0186 0.7345 -2.5904 9 7 4.1951 0.8312 -3.0087 10 6 3.9838 0.5016 -4.4204 11 1 3.0361 0.9137 -4.7667 12 6 4.0112 -1.0248 -4.6228 13 7 5.1490 -1.3234 -5.5191 14 6 4.8447 -2.4632 -6.3944 15 6 4.5363 -3.6745 -5.5528 16 8 4.6718 -3.6267 -4.3483 17 7 4.1101 -4.8112 -6.1383 18 6 3.8290 -5.9131 -5.3726 19 1 3.9495 -5.8704 -4.3003 20 6 3.3901 -7.0851 -5.9763 21 7 3.1202 -8.1411 -5.2424 22 14 3.1823 -7.1590 -7.8313 23 1 4.4535 -7.6077 -8.4542 24 1 2.0997 -8.1173 -8.1703 25 1 2.8286 -5.8110 -8.3439 26 6 5.3744 -0.0881 -6.3126 27 6 5.1502 1.0435 -5.2783 28 1 6.0415 1.1909 -4.6686 29 8 4.7757 2.2583 -5.9311 30 6 5.8649 3.1545 -6.1604 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.2568 1.8014 1.9564 35 1 2.6614 2.7670 1.4425 36 1 2.8830 1.0775 1.9563 37 1 3.8426 2.2371 -0.6444 38 1 3.9932 0.5053 -0.2618 39 1 5.0933 0.9829 -2.6753 40 1 4.1526 -1.5239 -3.6641 41 1 3.0797 -1.3551 -5.0826 42 1 3.9821 -2.2236 -7.0163 43 1 5.7046 -2.6723 -7.0309 44 1 4.0014 -4.8494 -7.1015 45 1 2.8134 -8.9592 -5.6638 46 1 4.6514 -0.0156 -7.1251 47 1 6.3931 -0.0596 -6.6991 48 1 6.3174 3.4278 -5.2071 49 1 6.6099 2.6675 -6.7898 50 1 5.4984 4.0516 -6.6595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212011306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:13 Heat of formation + Delta-G solvation = -142.031334 kcal Electronic energy + Delta-G solvation = -31172.063723 eV Core-core repulsion = 26814.372040 eV Total energy + Delta-G solvation = -4357.691683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -40.35623 -39.27420 -38.27282 -37.77617 -36.61754 -34.37658 -33.84491 -32.97769 -31.66173 -30.65196 -28.76300 -27.73650 -27.19194 -26.51573 -25.91266 -23.97610 -22.14020 -21.48291 -20.88854 -20.19444 -19.30788 -18.24272 -17.47380 -17.15309 -16.94992 -16.30993 -15.94114 -15.57558 -15.32888 -15.07444 -15.05962 -14.88305 -14.71420 -14.49534 -14.10117 -13.72556 -13.50572 -13.39268 -13.04138 -12.87142 -12.76221 -12.67765 -12.38434 -12.27471 -12.12229 -12.07454 -11.90321 -11.80202 -11.60232 -11.47999 -11.32870 -11.01315 -10.90684 -10.83626 -10.57200 -10.03746 -9.94238 -9.74790 -9.58336 -9.52915 -9.03040 -8.57387 -8.17010 -8.09104 -6.27878 -3.79124 2.71443 3.01399 3.05204 3.08963 3.17170 3.41377 3.75094 3.76420 4.10821 4.14362 4.35716 4.57046 4.58988 4.68452 4.81239 4.82843 4.97411 5.03635 5.09715 5.14505 5.23375 5.25633 5.28703 5.31397 5.39282 5.41458 5.43721 5.48852 5.51711 5.54116 5.62946 5.72737 5.72894 5.76635 5.80725 5.91543 5.95281 6.00810 6.31376 6.60460 6.82878 7.02826 7.09180 7.21257 7.49120 7.60882 8.17481 8.28266 8.62906 8.98330 9.45371 9.85716 10.85276 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008496 B = 0.003173 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3294.765160 B = 8821.758761 C =11537.063394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.373 6.373 3 C 0.100 3.900 4 H 0.067 0.933 5 C -0.175 4.175 6 C -0.141 4.141 7 C 0.518 3.482 8 O -0.529 6.529 9 N -0.721 5.721 10 C 0.137 3.863 11 H 0.104 0.896 12 C 0.039 3.961 13 N -0.489 5.489 14 C 0.034 3.966 15 C 0.451 3.549 16 O -0.558 6.558 17 N -0.591 5.591 18 C -0.303 4.303 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.015 3.985 27 C 0.080 3.920 28 H 0.083 0.917 29 O -0.378 6.378 30 C 0.031 3.969 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.399 0.601 40 H 0.108 0.892 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.370 0.630 45 H 0.273 0.727 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.042 0.958 49 H 0.043 0.957 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 25.394 2.921 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.292 6.292 3 C 0.041 3.959 4 H 0.085 0.915 5 C -0.232 4.232 6 C -0.181 4.181 7 C 0.305 3.695 8 O -0.404 6.404 9 N -0.373 5.373 10 C 0.032 3.968 11 H 0.122 0.878 12 C -0.090 4.090 13 N -0.214 5.214 14 C -0.098 4.098 15 C 0.236 3.764 16 O -0.440 6.440 17 N -0.230 5.230 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.114 4.114 27 C 0.021 3.979 28 H 0.101 0.899 29 O -0.296 6.296 30 C -0.066 4.066 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.233 0.767 40 H 0.126 0.874 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.203 0.797 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.105 0.895 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.980 24.784 3.704 25.236 hybrid contribution -0.334 0.086 -1.867 1.898 sum 2.646 24.869 1.838 25.077 Atomic orbital electron populations 1.22702 0.80996 1.02719 0.99421 1.87947 1.19812 1.26531 1.94876 1.21759 0.93507 0.86143 0.94489 0.91540 1.22306 1.02625 1.01486 0.96832 1.21852 0.99374 1.04299 0.92543 1.20517 0.84730 0.76382 0.87899 1.90706 1.23351 1.48740 1.77615 1.45969 1.09753 1.72523 1.09092 1.21875 0.99409 0.95147 0.80416 0.87804 1.23296 0.92407 0.92749 1.00544 1.64564 1.38535 1.01864 1.16439 1.22150 1.00943 0.91682 0.95053 1.19580 0.83925 0.84014 0.88840 1.90560 1.55803 1.83320 1.14292 1.42197 1.60737 1.11798 1.08282 1.19425 1.41675 0.87530 0.94551 0.86257 1.25030 0.97484 0.95306 0.98332 1.69621 1.44672 1.02389 1.35466 0.86678 0.78934 0.78407 0.85412 1.19617 1.20192 1.19535 1.23658 1.02231 0.89725 0.95826 1.23252 0.97050 0.84372 0.93243 0.89895 1.87947 1.33506 1.28789 1.79325 1.22811 0.90180 0.93491 1.00073 0.94823 0.93636 0.89797 0.92200 0.91653 0.91541 0.87869 0.87706 0.76663 0.87416 0.93009 0.93075 0.88760 0.79738 0.91638 0.92465 0.89476 0.93970 0.93784 0.89634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.82 101.05 1.09 1.55 16 2 O -0.37 -5.29 9.58 -49.63 -0.48 -5.76 16 3 C 0.10 1.07 2.27 -26.73 -0.06 1.01 16 4 H 0.07 0.73 7.60 -51.93 -0.39 0.34 16 5 C -0.17 -1.37 9.53 37.16 0.35 -1.02 16 6 C -0.14 -1.36 5.41 -27.89 -0.15 -1.51 16 7 C 0.52 6.97 7.71 -10.99 -0.08 6.89 16 8 O -0.53 -9.30 15.07 -8.85 -0.13 -9.43 16 9 N -0.72 -8.57 5.01 -52.49 -0.26 -8.83 16 10 C 0.14 1.88 3.11 -66.57 -0.21 1.68 16 11 H 0.10 1.61 7.49 -51.93 -0.39 1.22 16 12 C 0.04 0.67 5.18 -2.76 -0.01 0.65 16 13 N -0.49 -7.85 5.12 -231.89 -1.19 -9.04 16 14 C 0.03 0.58 5.30 -4.98 -0.03 0.55 16 15 C 0.45 10.45 7.39 -10.99 -0.08 10.37 16 16 O -0.56 -15.11 14.10 5.54 0.08 -15.03 16 17 N -0.59 -14.37 5.09 -10.97 -0.06 -14.43 16 18 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 19 H 0.12 3.93 7.39 -52.49 -0.39 3.54 16 20 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 21 N -0.88 -26.17 13.96 55.50 0.77 -25.40 16 22 Si 0.88 19.73 27.74 -169.99 -4.71 15.01 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 25 H -0.27 -5.55 6.52 56.52 0.37 -5.18 16 26 C 0.01 0.18 6.28 -1.90 -0.01 0.16 16 27 C 0.08 0.89 3.26 -24.87 -0.08 0.81 16 28 H 0.08 0.79 7.44 -51.93 -0.39 0.40 16 29 O -0.38 -4.16 10.44 -35.23 -0.37 -4.53 16 30 C 0.03 0.23 10.85 101.05 1.10 1.32 16 31 H 0.03 0.32 7.87 -51.93 -0.41 -0.09 16 32 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.46 7.87 -51.93 -0.41 0.05 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.40 3.53 8.38 -40.82 -0.34 3.19 16 40 H 0.11 2.22 6.81 -51.93 -0.35 1.87 16 41 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 42 H 0.05 0.79 8.00 -51.93 -0.42 0.38 16 43 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.37 7.92 5.76 -40.82 -0.24 7.68 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.06 0.69 7.95 -51.93 -0.41 0.28 16 47 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.04 0.26 8.11 -51.93 -0.42 -0.16 16 49 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 407.66 15.07 6.14 6.14 Total: -1.00 -36.89 407.66 -6.97 -43.86 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -8.35 Total: 12.80 kcal Atomic # 6 Polarization: 13.06 SS G_CDS: 1.58 Total: 14.64 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.73 Total: -57.70 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.90 Total: -34.75 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.71 Total: 15.01 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.89 -6.97 -43.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212011306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.173 kcal (2) G-P(sol) polarization free energy of solvation -36.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds