Wall clock time and date at job start Wed Apr 1 2020 02:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99773 * 2 1 4 4 H 1.08994 * 109.46853 * 330.00456 * 3 2 1 5 5 C 1.53009 * 109.46920 * 90.00194 * 3 2 1 6 6 C 1.52995 * 109.46945 * 209.99967 * 3 2 1 7 7 C 1.50699 * 109.47301 * 65.00196 * 6 3 2 8 8 O 1.21281 * 119.99965 * 0.02562 * 7 6 3 9 9 N 1.34779 * 120.00360 * 179.97438 * 7 6 3 10 10 C 1.46493 * 120.00033 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.27708 * 32.91326 * 10 9 7 12 12 C 1.53999 * 110.31022 * 270.71718 * 10 9 7 13 13 N 1.47895 * 107.06228 * 242.31117 * 12 10 9 14 14 C 1.46902 * 111.00089 * 214.15693 * 13 12 10 15 15 C 1.50694 * 109.46898 * 300.98289 * 14 13 12 16 16 O 1.21298 * 120.00330 * 354.03755 * 15 14 13 17 17 N 1.34778 * 120.00061 * 174.04112 * 15 14 13 18 18 C 1.37096 * 120.00376 * 180.02562 * 17 15 14 19 19 H 1.07995 * 119.99532 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00122 * 180.02562 * 18 17 15 21 21 N 1.31409 * 120.00119 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 120.00000 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46638 * 90.00467 * 22 20 18 24 24 H 1.48503 * 109.47186 * 210.00028 * 22 20 18 25 25 H 1.48493 * 109.47315 * 330.00464 * 22 20 18 26 26 C 1.48535 * 105.82042 * 334.66848 * 13 12 10 27 27 C 1.54602 * 110.30900 * 155.00738 * 10 9 7 28 28 H 1.08991 * 110.72396 * 22.51135 * 27 10 9 29 29 O 1.42901 * 110.71856 * 259.23112 * 27 10 9 30 30 C 1.42904 * 113.99885 * 149.99895 * 29 27 10 31 31 H 1.08997 * 109.46925 * 299.99469 * 1 2 3 32 32 H 1.08998 * 109.47016 * 60.00136 * 1 2 3 33 33 H 1.09003 * 109.46397 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46842 * 300.00192 * 5 3 2 35 35 H 1.08995 * 109.46577 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.46797 * 60.00081 * 5 3 2 37 37 H 1.09006 * 109.47273 * 184.99877 * 6 3 2 38 38 H 1.09003 * 109.47921 * 304.99832 * 6 3 2 39 39 H 0.97001 * 119.99816 * 0.02562 * 9 7 6 40 40 H 1.09001 * 109.91221 * 1.66732 * 12 10 9 41 41 H 1.09000 * 109.91492 * 122.95765 * 12 10 9 42 42 H 1.09002 * 109.47173 * 60.98448 * 14 13 12 43 43 H 1.09002 * 109.47186 * 180.98052 * 14 13 12 44 44 H 0.97003 * 119.99901 * 359.97438 * 17 15 14 45 45 H 0.97003 * 120.00498 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.66697 * 280.77466 * 26 13 12 47 47 H 1.08997 * 110.67161 * 157.63777 * 26 13 12 48 48 H 1.08997 * 109.47028 * 299.99983 * 30 29 27 49 49 H 1.09005 * 109.46975 * 59.99800 * 30 29 27 50 50 H 1.09001 * 109.47017 * 179.97438 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 -0.5137 5 6 2.2177 1.7714 1.4426 6 6 3.3588 1.2634 -0.7212 7 6 3.1416 0.9237 -2.1733 8 8 2.0186 0.7345 -2.5904 9 7 4.1951 0.8312 -3.0087 10 6 3.9838 0.5016 -4.4204 11 1 3.0361 0.9137 -4.7667 12 6 4.0112 -1.0248 -4.6228 13 7 5.1490 -1.3234 -5.5191 14 6 4.8447 -2.4632 -6.3944 15 6 4.5363 -3.6745 -5.5528 16 8 4.6718 -3.6267 -4.3483 17 7 4.1101 -4.8112 -6.1383 18 6 3.8290 -5.9131 -5.3726 19 1 3.9495 -5.8704 -4.3003 20 6 3.3901 -7.0851 -5.9763 21 7 3.1202 -8.1411 -5.2424 22 14 3.1823 -7.1590 -7.8313 23 1 4.4535 -7.6077 -8.4542 24 1 2.0997 -8.1173 -8.1703 25 1 2.8286 -5.8110 -8.3439 26 6 5.3744 -0.0881 -6.3126 27 6 5.1502 1.0435 -5.2783 28 1 6.0415 1.1909 -4.6686 29 8 4.7757 2.2583 -5.9311 30 6 5.8649 3.1545 -6.1604 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 1.2568 1.8014 1.9564 35 1 2.6614 2.7670 1.4425 36 1 2.8830 1.0775 1.9563 37 1 3.8426 2.2371 -0.6444 38 1 3.9932 0.5053 -0.2618 39 1 5.0933 0.9829 -2.6753 40 1 4.1526 -1.5239 -3.6641 41 1 3.0797 -1.3551 -5.0826 42 1 3.9821 -2.2236 -7.0163 43 1 5.7046 -2.6723 -7.0309 44 1 4.0014 -4.8494 -7.1015 45 1 2.8134 -8.9592 -5.6638 46 1 4.6514 -0.0156 -7.1251 47 1 6.3931 -0.0596 -6.6991 48 1 6.3174 3.4278 -5.2071 49 1 6.6099 2.6675 -6.7898 50 1 5.4984 4.0516 -6.6595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212011306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:12 Heat of formation + Delta-G solvation = -174.545804 kcal Electronic energy + Delta-G solvation = -31173.473657 eV Core-core repulsion = 26814.372040 eV Total energy + Delta-G solvation = -4359.101617 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.47756 -40.55214 -39.74431 -38.74610 -37.73620 -36.02638 -35.42408 -33.86631 -33.76643 -31.82556 -29.73464 -28.84891 -28.20448 -27.45956 -27.07483 -25.64741 -23.18534 -22.48633 -22.00161 -21.29905 -21.19624 -20.17661 -18.47007 -18.15413 -17.86550 -17.67810 -17.34071 -16.83736 -16.59802 -16.40342 -16.02136 -15.93475 -15.84059 -15.65882 -15.25721 -15.09326 -14.99700 -14.71899 -14.54417 -14.21776 -13.86462 -13.80115 -13.51888 -13.37457 -13.19395 -13.12882 -13.00516 -12.88055 -12.79042 -12.54844 -12.44815 -12.39720 -12.33730 -12.00192 -11.81320 -11.66818 -11.51423 -10.98081 -10.71712 -10.52369 -10.41371 -10.26808 -10.10491 -9.47876 -8.43118 -6.04139 1.28062 1.33454 1.42354 1.66122 1.92244 2.07355 2.21078 2.42369 2.83073 2.89688 3.12319 3.19763 3.47259 3.57371 3.75503 3.86150 3.93928 4.09644 4.14054 4.19995 4.28661 4.33912 4.36526 4.41920 4.45743 4.53136 4.55056 4.59219 4.60655 4.66717 4.71574 4.74796 4.80793 4.83029 4.88278 4.93004 4.98229 5.04446 5.31845 5.45343 5.49439 5.67276 5.79766 5.94748 6.22046 6.32112 6.53929 6.57006 6.85863 7.28177 7.36571 7.93723 8.74724 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008496 B = 0.003173 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3294.765160 B = 8821.758761 C =11537.063394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.409 6.409 3 C 0.090 3.910 4 H 0.059 0.941 5 C -0.166 4.166 6 C -0.134 4.134 7 C 0.508 3.492 8 O -0.579 6.579 9 N -0.710 5.710 10 C 0.143 3.857 11 H 0.082 0.918 12 C 0.046 3.954 13 N -0.500 5.500 14 C 0.044 3.956 15 C 0.448 3.552 16 O -0.605 6.605 17 N -0.591 5.591 18 C -0.328 4.328 19 H 0.053 0.947 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.252 1.252 24 H -0.275 1.275 25 H -0.234 1.234 26 C 0.017 3.983 27 C 0.095 3.905 28 H 0.107 0.893 29 O -0.396 6.396 30 C 0.023 3.977 31 H 0.060 0.940 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.148 0.852 38 H 0.110 0.890 39 H 0.416 0.584 40 H 0.063 0.937 41 H 0.022 0.978 42 H 0.075 0.925 43 H 0.133 0.867 44 H 0.389 0.611 45 H 0.279 0.721 46 H 0.062 0.938 47 H 0.118 0.882 48 H 0.056 0.944 49 H 0.057 0.943 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 28.383 0.333 28.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.328 6.328 3 C 0.032 3.968 4 H 0.077 0.923 5 C -0.223 4.223 6 C -0.173 4.173 7 C 0.296 3.704 8 O -0.458 6.458 9 N -0.363 5.363 10 C 0.036 3.964 11 H 0.100 0.900 12 C -0.083 4.083 13 N -0.226 5.226 14 C -0.088 4.088 15 C 0.235 3.765 16 O -0.489 6.489 17 N -0.233 5.233 18 C -0.457 4.457 19 H 0.071 0.929 20 C -0.214 4.214 21 N -0.575 5.575 22 Si 0.785 3.215 23 H -0.177 1.177 24 H -0.200 1.200 25 H -0.158 1.158 26 C -0.111 4.111 27 C 0.036 3.964 28 H 0.125 0.875 29 O -0.314 6.314 30 C -0.073 4.073 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.166 0.834 38 H 0.129 0.871 39 H 0.254 0.746 40 H 0.082 0.918 41 H 0.040 0.960 42 H 0.093 0.907 43 H 0.151 0.849 44 H 0.225 0.775 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.136 0.864 48 H 0.075 0.925 49 H 0.076 0.924 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.998 27.823 1.114 28.290 hybrid contribution -0.920 -0.795 -0.938 1.536 sum 4.078 27.028 0.176 27.334 Atomic orbital electron populations 1.22726 0.80469 1.02616 1.00067 1.87891 1.20740 1.29015 1.95178 1.22040 0.93616 0.84650 0.96522 0.92295 1.22241 1.02931 1.02755 0.94389 1.21967 0.99320 1.06785 0.89271 1.21328 0.84183 0.75333 0.89508 1.90683 1.25373 1.51018 1.78729 1.45884 1.10504 1.71517 1.08409 1.21637 1.00063 0.92652 0.82011 0.89981 1.23022 0.91638 0.94988 0.98665 1.64510 1.37424 1.03377 1.17246 1.22121 1.03483 0.88929 0.94224 1.20853 0.81485 0.85170 0.88973 1.90549 1.57023 1.84331 1.17018 1.42020 1.61418 1.11042 1.08856 1.18981 1.44067 0.90203 0.92470 0.92853 1.26126 0.95924 0.93845 1.05496 1.69806 1.45487 1.03420 1.38787 0.85358 0.79558 0.80229 0.76326 1.17668 1.19999 1.15792 1.23802 1.04037 0.87629 0.95596 1.23076 0.96068 0.84564 0.92689 0.87523 1.87934 1.35432 1.28826 1.79207 1.23066 0.89643 0.93263 1.01324 0.92166 0.94889 0.90394 0.92115 0.88907 0.91686 0.83390 0.87135 0.74641 0.91809 0.96003 0.90678 0.84944 0.77514 0.91108 0.91959 0.86441 0.92546 0.92413 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.95 10.82 113.37 1.23 2.18 16 2 O -0.41 -12.16 9.58 -135.21 -1.30 -13.45 16 3 C 0.09 1.91 2.27 30.60 0.07 1.98 16 4 H 0.06 1.32 7.60 -2.39 -0.02 1.30 16 5 C -0.17 -2.33 9.53 71.99 0.69 -1.64 16 6 C -0.13 -2.46 5.41 29.85 0.16 -2.29 16 7 C 0.51 13.99 7.71 87.66 0.68 14.67 16 8 O -0.58 -21.67 15.07 10.74 0.16 -21.51 16 9 N -0.71 -16.74 5.01 -438.37 -2.20 -18.93 16 10 C 0.14 3.93 3.11 45.88 0.14 4.08 16 11 H 0.08 2.64 7.49 -2.39 -0.02 2.62 16 12 C 0.05 1.66 5.18 86.45 0.45 2.11 16 13 N -0.50 -15.42 5.12 -887.57 -4.54 -19.96 16 14 C 0.04 1.41 5.30 85.55 0.45 1.87 16 15 C 0.45 21.14 7.39 87.65 0.65 21.79 16 16 O -0.61 -34.75 14.10 -3.09 -0.04 -34.79 16 17 N -0.59 -29.06 5.09 -306.99 -1.56 -30.63 16 18 C -0.33 -19.89 10.16 84.04 0.85 -19.04 16 19 H 0.05 3.85 7.39 -2.91 -0.02 3.83 16 20 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 21 N -0.93 -57.81 13.96 21.66 0.30 -57.50 16 22 Si 0.97 39.96 27.74 68.60 1.90 41.87 16 23 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 25 H -0.23 -8.29 6.52 99.48 0.65 -7.64 16 26 C 0.02 0.36 6.28 86.65 0.54 0.91 16 27 C 0.10 1.88 3.26 31.80 0.10 1.98 16 28 H 0.11 1.61 7.44 -2.39 -0.02 1.59 16 29 O -0.40 -7.56 10.44 -148.98 -1.56 -9.12 16 30 C 0.02 0.24 10.85 113.37 1.23 1.47 16 31 H 0.06 1.15 7.87 -2.39 -0.02 1.13 16 32 H 0.03 0.88 8.08 -2.39 -0.02 0.87 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 0.84 7.87 -2.39 -0.02 0.82 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.15 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.42 6.71 8.38 -92.71 -0.78 5.94 16 40 H 0.06 2.84 6.81 -2.39 -0.02 2.82 16 41 H 0.02 0.88 7.71 -2.39 -0.02 0.86 16 42 H 0.08 2.12 8.00 -2.39 -0.02 2.10 16 43 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 44 H 0.39 15.86 5.76 -92.71 -0.53 15.32 16 45 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 46 H 0.06 1.28 7.95 -2.39 -0.02 1.26 16 47 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.06 0.46 8.11 -2.39 -0.02 0.44 16 49 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 50 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -90.94 407.66 -1.54 -92.48 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -0.42 Total: 41.91 kcal Atomic # 6 Polarization: 21.94 SS G_CDS: 7.71 Total: 29.65 kcal Atomic # 7 Polarization: -119.03 SS G_CDS: -8.00 Total: -127.03 kcal Atomic # 8 Polarization: -76.14 SS G_CDS: -2.73 Total: -78.87 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 1.90 Total: 41.87 kcal Total: -90.94 -1.54 -92.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212011306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.069 kcal (2) G-P(sol) polarization free energy of solvation -90.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds