Wall clock time and date at job start Wed Apr 1 2020 02:24:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99961 * 2 1 4 4 C 1.53004 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46729 * 305.00394 * 4 3 2 6 6 C 1.52999 * 109.46829 * 65.00073 * 4 3 2 7 7 C 1.50691 * 109.47005 * 185.00315 * 4 3 2 8 8 O 1.21280 * 120.00531 * 0.02562 * 7 4 3 9 9 N 1.34783 * 120.00143 * 180.02562 * 7 4 3 10 10 C 1.46500 * 120.00267 * 180.02562 * 9 7 4 11 11 H 1.08999 * 110.27273 * 34.29519 * 10 9 7 12 12 C 1.53991 * 110.30454 * 272.21126 * 10 9 7 13 13 N 1.48134 * 106.94082 * 242.33634 * 12 10 9 14 14 C 1.46904 * 110.94907 * 214.10714 * 13 12 10 15 15 C 1.50700 * 109.47032 * 300.95287 * 14 13 12 16 16 O 1.21296 * 119.99699 * 354.04339 * 15 14 13 17 17 N 1.34773 * 120.00064 * 174.04247 * 15 14 13 18 18 C 1.37101 * 119.99786 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00497 * 359.97438 * 18 17 15 20 20 C 1.38958 * 119.99785 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99827 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99807 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47190 * 60.00224 * 22 20 18 24 24 H 1.48501 * 109.47090 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47427 * 299.99905 * 22 20 18 26 26 C 1.48537 * 105.82097 * 334.59129 * 13 12 10 27 27 C 1.54588 * 110.30854 * 156.38924 * 10 9 7 28 28 H 1.08996 * 110.72679 * 22.50967 * 27 10 9 29 29 O 1.42905 * 110.72174 * 259.40569 * 27 10 9 30 30 C 1.42905 * 113.99936 * 150.00073 * 29 27 10 31 31 H 1.09001 * 109.46698 * 299.99847 * 1 2 3 32 32 H 1.08999 * 109.47406 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47300 * 59.99218 * 1 2 3 34 34 H 1.08995 * 109.47593 * 300.00497 * 3 2 1 35 35 H 1.09007 * 109.46661 * 60.00474 * 3 2 1 36 36 H 1.09001 * 109.46574 * 179.97438 * 6 4 3 37 37 H 1.08997 * 109.47434 * 299.99878 * 6 4 3 38 38 H 1.08996 * 109.46885 * 60.00136 * 6 4 3 39 39 H 0.97000 * 119.99490 * 0.02562 * 9 7 4 40 40 H 1.09000 * 109.92237 * 1.65772 * 12 10 9 41 41 H 1.09000 * 109.92186 * 122.95907 * 12 10 9 42 42 H 1.08990 * 109.47631 * 60.95744 * 14 13 12 43 43 H 1.09006 * 109.46582 * 180.96029 * 14 13 12 44 44 H 0.96996 * 120.00186 * 359.97438 * 17 15 14 45 45 H 0.97007 * 119.99801 * 180.02562 * 21 20 18 46 46 H 1.09001 * 110.66709 * 280.82340 * 26 13 12 47 47 H 1.09002 * 110.80655 * 157.76928 * 26 13 12 48 48 H 1.09002 * 109.46822 * 300.00332 * 30 29 27 49 49 H 1.08997 * 109.46921 * 60.00164 * 30 29 27 50 50 H 1.09001 * 109.47163 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8514 0.5680 0.8409 6 6 3.9951 0.5368 -1.3083 7 6 4.1480 2.5558 0.1233 8 8 3.4350 3.5335 0.2046 9 7 5.4884 2.6958 0.1437 10 6 6.0840 4.0288 0.2647 11 1 5.4623 4.6644 0.8953 12 6 6.2590 4.6643 -1.1270 13 7 7.7116 4.8760 -1.3253 14 6 7.9629 6.0921 -2.1101 15 6 7.2843 5.9740 -3.4505 16 8 6.7455 4.9348 -3.7679 17 7 7.2763 7.0231 -4.2965 18 6 6.6585 6.9158 -5.5157 19 1 6.1787 5.9905 -5.7984 20 6 6.6507 7.9973 -6.3882 21 7 7.2350 9.1230 -6.0444 22 14 5.8097 7.8509 -8.0496 23 1 4.3712 7.5401 -7.8506 24 1 5.9411 9.1339 -8.7858 25 1 6.4475 6.7625 -8.8332 26 6 8.2936 4.9916 0.0365 27 6 7.5122 3.9275 0.8474 28 1 7.9274 2.9337 0.6802 29 8 7.5139 4.2464 2.2404 30 6 8.5276 3.5732 2.9896 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 -0.8898 34 1 1.6886 1.8464 -0.8899 35 1 1.6886 1.8463 0.8901 36 1 5.0818 0.4512 -1.3089 37 1 3.5521 -0.4550 -1.3979 38 1 3.6792 1.1533 -2.1498 39 1 6.0587 1.9139 0.0783 40 1 5.8732 3.9920 -1.8934 41 1 5.7342 5.6187 -1.1682 42 1 7.5670 6.9567 -1.5774 43 1 9.0361 6.2152 -2.2558 44 1 7.7069 7.8543 -4.0425 45 1 7.2292 9.8782 -6.6533 46 1 8.1231 5.9879 0.4444 47 1 9.3586 4.7599 0.0234 48 1 8.3856 2.4957 2.9064 49 1 9.5083 3.8419 2.5970 50 1 8.4618 3.8683 4.0368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212011784.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:38 Heat of formation + Delta-G solvation = -150.760748 kcal Electronic energy + Delta-G solvation = -31023.425073 eV Core-core repulsion = 26665.354854 eV Total energy + Delta-G solvation = -4358.070219 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.46667 -39.28819 -38.14391 -37.88431 -36.57827 -34.49841 -33.90869 -33.67616 -31.27696 -30.40205 -28.25072 -27.53019 -27.17793 -26.03700 -25.85956 -24.27996 -23.16015 -21.50634 -20.93114 -19.95828 -19.12756 -17.88955 -17.69737 -17.17229 -16.61949 -16.22108 -15.97239 -15.84379 -15.46412 -15.30350 -15.06263 -14.85873 -14.68030 -14.47649 -14.18898 -13.88888 -13.60875 -13.50286 -13.36047 -12.91066 -12.71040 -12.49936 -12.31970 -12.22742 -11.91049 -11.82979 -11.74516 -11.68645 -11.49892 -11.46113 -11.21424 -11.06600 -10.93281 -10.87097 -10.43472 -10.21057 -10.02570 -9.87967 -9.73086 -9.48049 -9.09581 -8.48344 -8.05872 -7.94163 -6.40965 -3.81697 2.57164 2.82125 3.20871 3.26481 3.30576 3.39051 3.71798 3.90743 4.10088 4.31323 4.37361 4.50125 4.61896 4.71695 4.82574 4.84789 5.01111 5.06941 5.08978 5.12326 5.14517 5.18646 5.24872 5.33413 5.41650 5.42446 5.44706 5.46710 5.52476 5.61981 5.65267 5.70515 5.76753 5.81031 5.83411 6.01332 6.08365 6.24970 6.28972 6.57575 6.85823 6.89791 7.08809 7.13918 7.39847 7.55770 8.06150 8.14641 8.61901 9.18454 9.54460 10.05987 10.76730 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008068 B = 0.003036 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3469.865211 B = 9220.913235 C =12169.896789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.079 3.921 4 C -0.107 4.107 5 H 0.104 0.896 6 C -0.142 4.142 7 C 0.524 3.476 8 O -0.537 6.537 9 N -0.714 5.714 10 C 0.135 3.865 11 H 0.105 0.895 12 C 0.040 3.960 13 N -0.488 5.488 14 C 0.036 3.964 15 C 0.442 3.558 16 O -0.579 6.579 17 N -0.563 5.563 18 C -0.299 4.299 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.015 3.985 27 C 0.080 3.920 28 H 0.083 0.917 29 O -0.378 6.378 30 C 0.031 3.969 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.401 0.599 40 H 0.106 0.894 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.057 0.943 47 H 0.087 0.913 48 H 0.042 0.958 49 H 0.044 0.956 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.627 -14.512 17.619 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.002 3.998 4 C -0.128 4.128 5 H 0.122 0.878 6 C -0.200 4.200 7 C 0.310 3.690 8 O -0.413 6.413 9 N -0.366 5.366 10 C 0.030 3.970 11 H 0.122 0.878 12 C -0.088 4.088 13 N -0.214 5.214 14 C -0.096 4.096 15 C 0.227 3.773 16 O -0.463 6.463 17 N -0.199 5.199 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.114 4.114 27 C 0.021 3.979 28 H 0.101 0.899 29 O -0.296 6.296 30 C -0.066 4.066 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.235 0.765 40 H 0.124 0.876 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.284 -14.770 17.142 22.743 hybrid contribution -0.051 1.046 -0.389 1.117 sum -2.335 -13.724 16.754 21.783 Atomic orbital electron populations 1.22724 0.80737 1.02601 1.00249 1.87783 1.19879 1.27974 1.95567 1.22239 0.91516 0.84151 1.01885 1.21153 0.95346 0.94465 1.01875 0.87791 1.21749 1.01416 1.01659 0.95138 1.20364 0.82274 0.90819 0.75548 1.90730 1.60870 1.40680 1.49013 1.45916 1.06617 1.09116 1.74904 1.21939 0.93255 0.84724 0.97101 0.87752 1.23308 0.88843 1.01372 0.95306 1.64644 1.10889 1.35106 1.10713 1.22117 1.01785 0.90934 0.94726 1.19671 0.86004 0.85336 0.86277 1.90506 1.49443 1.29152 1.77150 1.41845 1.49684 1.12865 1.15543 1.19643 1.31323 1.00156 0.91714 0.87976 1.25260 0.97667 0.94892 1.00087 1.69605 1.43933 1.02993 1.37787 0.85922 0.79710 0.77357 0.81261 1.19900 1.20975 1.19876 1.23647 0.99807 0.98545 0.89434 1.23232 0.94947 0.98582 0.81103 0.89933 1.87946 1.54416 1.68457 1.18741 1.22814 0.90962 0.96246 0.96536 0.94063 0.89631 0.93876 0.92187 0.92333 0.91911 0.90680 0.91693 0.76456 0.87566 0.92939 0.93118 0.88915 0.77477 0.91816 0.92433 0.89464 0.93980 0.93737 0.89604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.22 10.24 -35.23 -0.36 -4.58 16 3 C 0.08 0.89 4.67 37.16 0.17 1.07 16 4 C -0.11 -1.12 2.96 -91.77 -0.27 -1.39 16 5 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 6 C -0.14 -1.40 8.99 37.16 0.33 -1.06 16 7 C 0.52 7.00 7.15 -10.99 -0.08 6.92 16 8 O -0.54 -9.31 15.59 5.56 0.09 -9.22 16 9 N -0.71 -8.48 4.91 -52.50 -0.26 -8.74 16 10 C 0.14 1.86 3.08 -66.58 -0.20 1.66 16 11 H 0.10 1.61 7.53 -51.93 -0.39 1.22 16 12 C 0.04 0.69 5.19 -2.63 -0.01 0.68 16 13 N -0.49 -8.00 5.12 -231.69 -1.19 -9.18 16 14 C 0.04 0.65 5.30 -4.97 -0.03 0.62 16 15 C 0.44 10.46 7.39 -10.99 -0.08 10.38 16 16 O -0.58 -15.50 14.10 5.54 0.08 -15.42 16 17 N -0.56 -14.37 5.29 -10.96 -0.06 -14.42 16 18 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 22 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 23 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.01 0.18 6.29 -1.90 -0.01 0.17 16 27 C 0.08 0.92 3.26 -24.88 -0.08 0.84 16 28 H 0.08 0.80 7.43 -51.93 -0.39 0.42 16 29 O -0.38 -4.26 10.45 -35.23 -0.37 -4.63 16 30 C 0.03 0.24 10.85 101.05 1.10 1.33 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.68 7.96 -51.92 -0.41 0.26 16 36 H 0.06 0.54 7.56 -51.93 -0.39 0.14 16 37 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.40 3.63 7.78 -40.82 -0.32 3.31 16 40 H 0.11 2.14 6.82 -51.93 -0.35 1.79 16 41 H 0.05 1.00 7.72 -51.93 -0.40 0.60 16 42 H 0.05 0.84 8.00 -51.93 -0.42 0.43 16 43 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 44 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 45 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.06 0.73 7.95 -51.93 -0.41 0.31 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 48 H 0.04 0.27 8.11 -51.93 -0.42 -0.15 16 49 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 410.40 15.07 6.18 6.18 Total: -1.00 -34.09 410.40 -6.85 -40.94 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -8.37 Total: 12.26 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 1.71 Total: 14.57 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.78 Total: -56.34 kcal Atomic # 8 Polarization: -33.29 SS G_CDS: -0.56 Total: -33.85 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.09 -6.85 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212011784.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.823 kcal (2) G-P(sol) polarization free energy of solvation -34.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds