Wall clock time and date at job start Wed Apr 1 2020 02:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99961 * 2 1 4 4 C 1.53004 * 109.46936 * 180.02562 * 3 2 1 5 5 H 1.09005 * 109.46729 * 305.00394 * 4 3 2 6 6 C 1.52999 * 109.46829 * 65.00073 * 4 3 2 7 7 C 1.50691 * 109.47005 * 185.00315 * 4 3 2 8 8 O 1.21280 * 120.00531 * 0.02562 * 7 4 3 9 9 N 1.34783 * 120.00143 * 180.02562 * 7 4 3 10 10 C 1.46500 * 120.00267 * 180.02562 * 9 7 4 11 11 H 1.08999 * 110.27273 * 34.29519 * 10 9 7 12 12 C 1.53991 * 110.30454 * 272.21126 * 10 9 7 13 13 N 1.48134 * 106.94082 * 242.33634 * 12 10 9 14 14 C 1.46904 * 110.94907 * 214.10714 * 13 12 10 15 15 C 1.50700 * 109.47032 * 300.95287 * 14 13 12 16 16 O 1.21296 * 119.99699 * 354.04339 * 15 14 13 17 17 N 1.34773 * 120.00064 * 174.04247 * 15 14 13 18 18 C 1.37101 * 119.99786 * 180.02562 * 17 15 14 19 19 H 1.07995 * 120.00497 * 359.97438 * 18 17 15 20 20 C 1.38958 * 119.99785 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99827 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 119.99807 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47190 * 60.00224 * 22 20 18 24 24 H 1.48501 * 109.47090 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47427 * 299.99905 * 22 20 18 26 26 C 1.48537 * 105.82097 * 334.59129 * 13 12 10 27 27 C 1.54588 * 110.30854 * 156.38924 * 10 9 7 28 28 H 1.08996 * 110.72679 * 22.50967 * 27 10 9 29 29 O 1.42905 * 110.72174 * 259.40569 * 27 10 9 30 30 C 1.42905 * 113.99936 * 150.00073 * 29 27 10 31 31 H 1.09001 * 109.46698 * 299.99847 * 1 2 3 32 32 H 1.08999 * 109.47406 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47300 * 59.99218 * 1 2 3 34 34 H 1.08995 * 109.47593 * 300.00497 * 3 2 1 35 35 H 1.09007 * 109.46661 * 60.00474 * 3 2 1 36 36 H 1.09001 * 109.46574 * 179.97438 * 6 4 3 37 37 H 1.08997 * 109.47434 * 299.99878 * 6 4 3 38 38 H 1.08996 * 109.46885 * 60.00136 * 6 4 3 39 39 H 0.97000 * 119.99490 * 0.02562 * 9 7 4 40 40 H 1.09000 * 109.92237 * 1.65772 * 12 10 9 41 41 H 1.09000 * 109.92186 * 122.95907 * 12 10 9 42 42 H 1.08990 * 109.47631 * 60.95744 * 14 13 12 43 43 H 1.09006 * 109.46582 * 180.96029 * 14 13 12 44 44 H 0.96996 * 120.00186 * 359.97438 * 17 15 14 45 45 H 0.97007 * 119.99801 * 180.02562 * 21 20 18 46 46 H 1.09001 * 110.66709 * 280.82340 * 26 13 12 47 47 H 1.09002 * 110.80655 * 157.76928 * 26 13 12 48 48 H 1.09002 * 109.46822 * 300.00332 * 30 29 27 49 49 H 1.08997 * 109.46921 * 60.00164 * 30 29 27 50 50 H 1.09001 * 109.47163 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8514 0.5680 0.8409 6 6 3.9951 0.5368 -1.3083 7 6 4.1480 2.5558 0.1233 8 8 3.4350 3.5335 0.2046 9 7 5.4884 2.6958 0.1437 10 6 6.0840 4.0288 0.2647 11 1 5.4623 4.6644 0.8953 12 6 6.2590 4.6643 -1.1270 13 7 7.7116 4.8760 -1.3253 14 6 7.9629 6.0921 -2.1101 15 6 7.2843 5.9740 -3.4505 16 8 6.7455 4.9348 -3.7679 17 7 7.2763 7.0231 -4.2965 18 6 6.6585 6.9158 -5.5157 19 1 6.1787 5.9905 -5.7984 20 6 6.6507 7.9973 -6.3882 21 7 7.2350 9.1230 -6.0444 22 14 5.8097 7.8509 -8.0496 23 1 4.3712 7.5401 -7.8506 24 1 5.9411 9.1339 -8.7858 25 1 6.4475 6.7625 -8.8332 26 6 8.2936 4.9916 0.0365 27 6 7.5122 3.9275 0.8474 28 1 7.9274 2.9337 0.6802 29 8 7.5139 4.2464 2.2404 30 6 8.5276 3.5732 2.9896 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 -0.8898 34 1 1.6886 1.8464 -0.8899 35 1 1.6886 1.8463 0.8901 36 1 5.0818 0.4512 -1.3089 37 1 3.5521 -0.4550 -1.3979 38 1 3.6792 1.1533 -2.1498 39 1 6.0587 1.9139 0.0783 40 1 5.8732 3.9920 -1.8934 41 1 5.7342 5.6187 -1.1682 42 1 7.5670 6.9567 -1.5774 43 1 9.0361 6.2152 -2.2558 44 1 7.7069 7.8543 -4.0425 45 1 7.2292 9.8782 -6.6533 46 1 8.1231 5.9879 0.4444 47 1 9.3586 4.7599 0.0234 48 1 8.3856 2.4957 2.9064 49 1 9.5083 3.8419 2.5970 50 1 8.4618 3.8683 4.0368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212011784.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:37 Heat of formation + Delta-G solvation = -179.750087 kcal Electronic energy + Delta-G solvation = -31024.682145 eV Core-core repulsion = 26665.354854 eV Total energy + Delta-G solvation = -4359.327291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.58660 -40.56024 -39.66036 -38.75447 -37.72519 -36.00083 -35.55974 -34.66654 -33.30743 -31.63093 -29.38472 -28.48397 -28.20298 -27.12833 -26.71657 -25.94049 -24.23228 -22.61503 -22.13147 -21.04990 -20.89004 -19.88188 -18.68772 -18.19521 -17.71578 -17.58080 -17.07615 -16.83600 -16.66475 -16.49713 -16.28607 -15.90354 -15.87596 -15.84146 -15.56778 -15.14912 -14.91265 -14.81775 -14.39327 -14.34882 -13.88301 -13.56094 -13.50115 -13.31124 -13.22722 -13.10595 -13.03365 -12.94383 -12.55230 -12.45732 -12.44816 -12.41164 -12.33562 -12.13836 -11.90930 -11.81567 -11.49665 -11.00587 -10.72726 -10.68086 -10.33991 -10.17815 -10.02781 -9.47059 -8.48286 -5.96917 1.37778 1.39498 1.49389 1.50508 1.85213 2.02886 2.25550 2.47160 2.84732 2.98318 3.18214 3.26394 3.50122 3.55445 3.61124 3.84359 3.92420 3.97591 4.13494 4.23831 4.27340 4.30766 4.40294 4.45246 4.47453 4.49367 4.52846 4.60306 4.61325 4.62893 4.67206 4.73872 4.81996 4.82879 4.86499 4.92804 4.95005 4.97314 5.27100 5.37014 5.38855 5.67036 5.76660 6.01563 6.09905 6.20955 6.41833 6.58172 7.10747 7.12927 7.53660 8.09287 8.69048 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.008068 B = 0.003036 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3469.865211 B = 9220.913235 C =12169.896789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.400 6.400 3 C 0.082 3.918 4 C -0.098 4.098 5 H 0.134 0.866 6 C -0.137 4.137 7 C 0.519 3.481 8 O -0.584 6.584 9 N -0.701 5.701 10 C 0.142 3.858 11 H 0.084 0.916 12 C 0.048 3.952 13 N -0.496 5.496 14 C 0.047 3.953 15 C 0.438 3.562 16 O -0.614 6.614 17 N -0.574 5.574 18 C -0.333 4.333 19 H 0.078 0.922 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.992 3.008 23 H -0.274 1.274 24 H -0.269 1.269 25 H -0.269 1.269 26 C 0.016 3.984 27 C 0.096 3.904 28 H 0.109 0.891 29 O -0.396 6.396 30 C 0.022 3.978 31 H 0.048 0.952 32 H 0.107 0.893 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.039 0.961 39 H 0.417 0.583 40 H 0.070 0.930 41 H 0.022 0.978 42 H 0.065 0.935 43 H 0.121 0.879 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.058 0.942 47 H 0.116 0.884 48 H 0.057 0.943 49 H 0.057 0.943 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.154 -15.877 18.887 24.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.319 6.319 3 C 0.005 3.995 4 C -0.119 4.119 5 H 0.152 0.848 6 C -0.195 4.195 7 C 0.307 3.693 8 O -0.463 6.463 9 N -0.353 5.353 10 C 0.036 3.964 11 H 0.102 0.898 12 C -0.082 4.082 13 N -0.222 5.222 14 C -0.085 4.085 15 C 0.226 3.774 16 O -0.500 6.500 17 N -0.211 5.211 18 C -0.462 4.462 19 H 0.096 0.904 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.815 3.185 23 H -0.200 1.200 24 H -0.194 1.194 25 H -0.195 1.195 26 C -0.112 4.112 27 C 0.037 3.963 28 H 0.126 0.874 29 O -0.314 6.314 30 C -0.073 4.073 31 H 0.066 0.934 32 H 0.125 0.875 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.058 0.942 39 H 0.255 0.745 40 H 0.089 0.911 41 H 0.040 0.960 42 H 0.083 0.917 43 H 0.139 0.861 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.134 0.866 48 H 0.075 0.925 49 H 0.075 0.925 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.766 -16.157 18.438 24.527 hybrid contribution -0.521 1.440 -0.711 1.688 sum -1.287 -14.717 17.727 23.076 Atomic orbital electron populations 1.22943 0.79405 1.04132 1.00594 1.87758 1.21381 1.27233 1.95572 1.22128 0.92256 0.84440 1.00719 1.21136 0.94586 0.92843 1.03321 0.84826 1.21729 1.02528 1.01524 0.93699 1.20954 0.82443 0.91478 0.74414 1.90709 1.61974 1.42452 1.51203 1.45790 1.06483 1.09122 1.73928 1.21693 0.94948 0.85084 0.94725 0.89764 1.23063 0.89340 0.99345 0.96433 1.64603 1.10123 1.34331 1.13102 1.22018 1.02579 0.92293 0.91568 1.20714 0.84835 0.84143 0.87749 1.90484 1.50679 1.30439 1.78363 1.41917 1.50159 1.13589 1.15442 1.19607 1.33100 0.99982 0.93557 0.90384 1.26035 0.97832 0.94262 1.03127 1.69666 1.44167 1.03358 1.38938 0.85009 0.78411 0.77938 0.77112 1.19976 1.19363 1.19457 1.23790 1.01174 0.99234 0.87017 1.23060 0.92415 0.99427 0.81438 0.87371 1.87933 1.55869 1.69269 1.18330 1.23072 0.90565 0.97000 0.96686 0.93369 0.87510 0.93949 0.94098 0.92922 0.90262 0.89496 0.94175 0.74464 0.91125 0.95999 0.91691 0.86098 0.77037 0.91271 0.92327 0.86629 0.92454 0.92460 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.40 -8.27 10.24 -148.98 -1.53 -9.79 16 3 C 0.08 1.87 4.67 71.98 0.34 2.21 16 4 C -0.10 -1.98 2.96 -11.54 -0.03 -2.02 16 5 H 0.13 1.96 8.14 -2.38 -0.02 1.94 16 6 C -0.14 -2.60 8.99 71.98 0.65 -1.96 16 7 C 0.52 14.11 7.15 87.65 0.63 14.74 16 8 O -0.58 -21.36 15.59 -3.03 -0.05 -21.40 16 9 N -0.70 -16.29 4.91 -438.39 -2.15 -18.44 16 10 C 0.14 3.89 3.08 45.87 0.14 4.04 16 11 H 0.08 2.69 7.53 -2.39 -0.02 2.67 16 12 C 0.05 1.69 5.19 86.40 0.45 2.14 16 13 N -0.50 -15.86 5.12 -886.92 -4.54 -20.40 16 14 C 0.05 1.65 5.30 85.56 0.45 2.10 16 15 C 0.44 21.30 7.39 87.66 0.65 21.95 16 16 O -0.61 -34.24 14.10 -3.08 -0.04 -34.28 16 17 N -0.57 -30.11 5.29 -306.98 -1.62 -31.73 16 18 C -0.33 -19.28 9.68 84.04 0.81 -18.47 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 20 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 21 N -0.92 -50.51 13.05 21.67 0.28 -50.23 16 22 Si 0.99 43.79 29.55 68.60 2.03 45.82 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 25 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 26 C 0.02 0.36 6.29 86.65 0.54 0.90 16 27 C 0.10 1.96 3.26 31.80 0.10 2.06 16 28 H 0.11 1.68 7.43 -2.39 -0.02 1.66 16 29 O -0.40 -7.91 10.45 -148.98 -1.56 -9.46 16 30 C 0.02 0.26 10.85 113.37 1.23 1.49 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.25 7.96 -2.38 -0.02 1.23 16 36 H 0.08 1.22 7.56 -2.39 -0.02 1.20 16 37 H 0.09 1.46 7.82 -2.39 -0.02 1.45 16 38 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.42 6.74 7.78 -92.71 -0.72 6.02 16 40 H 0.07 3.01 6.82 -2.39 -0.02 3.00 16 41 H 0.02 0.88 7.72 -2.39 -0.02 0.87 16 42 H 0.07 2.13 8.00 -2.39 -0.02 2.11 16 43 H 0.12 3.62 8.14 -2.38 -0.02 3.60 16 44 H 0.40 19.74 7.90 -92.71 -0.73 19.01 16 45 H 0.28 14.29 8.31 -92.70 -0.77 13.52 16 46 H 0.06 1.34 7.95 -2.39 -0.02 1.32 16 47 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.06 0.51 8.11 -2.39 -0.02 0.49 16 49 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -77.43 410.40 -2.01 -79.44 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: -0.50 Total: 39.90 kcal Atomic # 6 Polarization: 22.91 SS G_CDS: 7.67 Total: 30.59 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -8.04 Total: -120.81 kcal Atomic # 8 Polarization: -71.77 SS G_CDS: -3.17 Total: -74.94 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -77.43 -2.01 -79.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212011784.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.306 kcal (2) G-P(sol) polarization free energy of solvation -77.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds