Wall clock time and date at job start Wed Apr 1 2020 02:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99981 * 2 1 4 4 C 1.52998 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47247 * 54.99643 * 4 3 2 6 6 C 1.53006 * 109.47046 * 294.99653 * 4 3 2 7 7 C 1.50703 * 109.47314 * 174.99959 * 4 3 2 8 8 O 1.21284 * 119.99690 * 0.02562 * 7 4 3 9 9 N 1.34775 * 120.00339 * 179.97438 * 7 4 3 10 10 C 1.46494 * 120.00127 * 179.97438 * 9 7 4 11 11 H 1.09007 * 110.28816 * 32.87907 * 10 9 7 12 12 C 1.54374 * 110.32883 * 270.64016 * 10 9 7 13 13 N 1.48551 * 104.59541 * 264.95888 * 12 10 9 14 14 C 1.46903 * 111.00202 * 200.95973 * 13 12 10 15 15 C 1.50709 * 109.47274 * 190.00006 * 14 13 12 16 16 O 1.21290 * 119.99791 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99860 * 179.97438 * 15 14 13 18 18 C 1.37094 * 119.99636 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00530 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99752 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00110 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99997 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46806 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47012 * 120.00256 * 22 20 18 25 25 H 1.48496 * 109.47223 * 240.00037 * 22 20 18 26 26 C 1.48561 * 104.22369 * 320.51345 * 13 12 10 27 27 C 1.54259 * 110.32372 * 154.99951 * 10 9 7 28 28 H 1.09002 * 110.32223 * 0.02562 * 27 10 9 29 29 O 1.42897 * 110.32853 * 237.89560 * 27 10 9 30 30 C 1.42898 * 114.00450 * 151.42375 * 29 27 10 31 31 H 1.08999 * 109.47582 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47501 * 300.00011 * 1 2 3 33 33 H 1.09000 * 109.47703 * 60.00089 * 1 2 3 34 34 H 1.09002 * 109.47513 * 59.99814 * 3 2 1 35 35 H 1.09007 * 109.47192 * 299.99835 * 3 2 1 36 36 H 1.08996 * 109.47089 * 300.00087 * 6 4 3 37 37 H 1.08999 * 109.46411 * 60.00266 * 6 4 3 38 38 H 1.08991 * 109.46845 * 180.02562 * 6 4 3 39 39 H 0.96997 * 119.99435 * 0.02562 * 9 7 4 40 40 H 1.09004 * 110.41045 * 23.73548 * 12 10 9 41 41 H 1.08995 * 110.41604 * 146.05531 * 12 10 9 42 42 H 1.09000 * 109.46869 * 309.99203 * 14 13 12 43 43 H 1.08992 * 109.47253 * 69.99759 * 14 13 12 44 44 H 0.97002 * 119.99652 * 0.02562 * 17 15 14 45 45 H 0.97007 * 120.00049 * 179.97438 * 21 20 18 46 46 H 1.09005 * 110.41198 * 280.70728 * 26 13 12 47 47 H 1.08998 * 110.41368 * 158.26250 * 26 13 12 48 48 H 1.09001 * 109.47446 * 300.00641 * 30 29 27 49 49 H 1.09005 * 109.46375 * 60.00322 * 30 29 27 50 50 H 1.09000 * 109.47054 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8507 0.5685 -0.8426 6 6 3.9962 0.5364 1.3065 7 6 4.1479 2.5560 -0.1245 8 8 3.4347 3.5337 -0.2039 9 7 5.4882 2.6960 -0.1460 10 6 6.0836 4.0290 -0.2669 11 1 5.4565 4.7695 0.2297 12 6 6.2769 4.3971 -1.7536 13 7 7.6808 4.0159 -2.0542 14 6 8.1787 4.7305 -3.2372 15 6 9.5029 4.1459 -3.6569 16 8 9.9846 3.2249 -3.0318 17 7 10.1516 4.6465 -4.7269 18 6 11.3564 4.1150 -5.1084 19 1 11.7855 3.2949 -4.5518 20 6 12.0250 4.6308 -6.2118 21 7 11.5028 5.6283 -6.8895 22 14 13.6671 3.9070 -6.7313 23 1 14.0343 2.8017 -5.8102 24 1 13.5606 3.3820 -8.1163 25 1 14.7111 4.9618 -6.6807 26 6 8.4351 4.4113 -0.8369 27 6 7.5034 4.0384 0.3362 28 1 7.7574 3.0510 0.7219 29 8 7.5949 5.0152 1.3752 30 6 8.5551 4.7008 2.3858 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8464 -0.8901 36 1 3.6809 1.1526 2.1485 37 1 3.5532 -0.4554 1.3960 38 1 5.0827 0.4508 1.3062 39 1 6.0585 1.9140 -0.0821 40 1 5.5869 3.8300 -2.3785 41 1 6.1314 5.4671 -1.9024 42 1 7.4619 4.6281 -4.0519 43 1 8.3073 5.7858 -2.9968 44 1 9.7665 5.3833 -5.2266 45 1 11.9698 5.9886 -7.6596 46 1 8.6294 5.4839 -0.8418 47 1 9.3701 3.8550 -0.7715 48 1 8.2903 3.7541 2.8567 49 1 9.5437 4.6179 1.9342 50 1 8.5634 5.4903 3.1372 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212011785.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:42 Heat of formation + Delta-G solvation = -152.182999 kcal Electronic energy + Delta-G solvation = -30664.036233 eV Core-core repulsion = 26305.904340 eV Total energy + Delta-G solvation = -4358.131893 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56414 -39.32945 -38.12981 -37.94062 -36.60658 -34.55381 -33.98645 -33.69466 -31.28299 -30.40796 -28.32400 -27.64297 -27.10643 -26.17355 -25.93613 -24.32873 -23.25152 -21.49258 -20.84062 -20.11587 -19.18772 -17.93471 -17.71912 -17.19187 -16.54526 -16.35202 -16.08895 -15.86477 -15.67794 -15.28580 -15.16983 -14.70896 -14.65637 -14.50645 -14.25878 -13.91713 -13.77330 -13.57656 -13.41783 -12.93091 -12.85574 -12.51375 -12.36080 -12.15531 -12.06580 -11.87777 -11.80275 -11.65301 -11.55081 -11.51253 -11.28525 -11.19239 -11.05694 -10.76317 -10.35275 -10.23225 -10.04056 -9.98699 -9.77344 -9.51135 -9.23158 -8.56483 -8.07426 -7.95985 -6.42025 -3.82876 2.42867 2.68357 3.15584 3.26099 3.32883 3.45296 3.71517 3.90136 4.06725 4.27798 4.33706 4.46289 4.52990 4.60528 4.72147 4.89413 4.96911 5.01443 5.06815 5.08867 5.14177 5.23258 5.26631 5.29653 5.33443 5.35805 5.37129 5.40843 5.48649 5.54187 5.61264 5.65402 5.67749 5.79116 5.82004 5.87101 5.92651 6.18800 6.25126 6.30719 6.79713 6.82953 7.09497 7.11852 7.30746 7.54757 8.01008 8.05732 8.61345 9.17781 9.54290 10.05887 10.75801 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.002213 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.224725 B =12648.150880 C =13848.536621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.081 3.919 4 C -0.110 4.110 5 H 0.109 0.891 6 C -0.140 4.140 7 C 0.525 3.475 8 O -0.542 6.542 9 N -0.711 5.711 10 C 0.145 3.855 11 H 0.109 0.891 12 C 0.023 3.977 13 N -0.479 5.479 14 C 0.034 3.966 15 C 0.446 3.554 16 O -0.579 6.579 17 N -0.565 5.565 18 C -0.297 4.297 19 H 0.103 0.897 20 C 0.021 3.979 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.018 3.982 27 C 0.079 3.921 28 H 0.079 0.921 29 O -0.380 6.380 30 C 0.031 3.969 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.042 0.958 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.405 0.595 40 H 0.087 0.913 41 H 0.056 0.944 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.054 0.946 47 H 0.102 0.898 48 H 0.041 0.959 49 H 0.047 0.953 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.714 -5.676 16.640 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.312 6.312 3 C 0.004 3.996 4 C -0.132 4.132 5 H 0.127 0.873 6 C -0.198 4.198 7 C 0.311 3.689 8 O -0.419 6.419 9 N -0.362 5.362 10 C 0.040 3.960 11 H 0.127 0.873 12 C -0.107 4.107 13 N -0.204 5.204 14 C -0.098 4.098 15 C 0.231 3.769 16 O -0.463 6.463 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.110 4.110 27 C 0.020 3.980 28 H 0.097 0.903 29 O -0.298 6.298 30 C -0.066 4.066 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.240 0.760 40 H 0.106 0.894 41 H 0.074 0.926 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.120 0.880 48 H 0.060 0.940 49 H 0.065 0.935 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.758 -6.054 16.726 24.439 hybrid contribution 0.851 0.762 -0.639 1.309 sum -15.907 -5.293 16.087 23.235 Atomic orbital electron populations 1.22728 0.80687 1.02710 1.00181 1.87800 1.19912 1.27897 1.95544 1.22216 0.91484 0.84215 1.01729 1.21179 0.95328 0.94612 1.02054 0.87271 1.21730 1.01377 1.01716 0.94948 1.20361 0.82241 0.90781 0.75510 1.90714 1.60930 1.40651 1.49602 1.45929 1.06555 1.09370 1.74390 1.21632 0.93535 0.85293 0.95545 0.87306 1.23554 0.92043 0.99813 0.95255 1.65149 1.00701 1.52711 1.01821 1.22083 0.97639 0.95980 0.94076 1.19671 0.86720 0.86677 0.83789 1.90494 1.68739 1.31114 1.55910 1.41869 1.19865 1.32621 1.25868 1.19730 0.95868 1.16202 1.10899 0.87888 1.25267 0.99979 0.96435 0.96368 1.69622 1.39691 1.25138 1.19851 0.85805 0.81241 0.78845 0.78472 1.19249 1.20755 1.20796 1.23643 0.98402 1.00230 0.88747 1.23111 0.94138 0.92425 0.88353 0.90322 1.87908 1.60337 1.46333 1.35251 1.22821 0.92073 1.00929 0.90751 0.89557 0.94042 0.93929 0.92504 0.92201 0.92239 0.90543 0.91974 0.75980 0.89442 0.92612 0.89147 0.92853 0.77500 0.91934 0.92790 0.88018 0.93999 0.93460 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.71 10.24 -35.23 -0.36 -4.08 16 3 C 0.08 0.77 4.67 37.16 0.17 0.94 16 4 C -0.11 -0.99 2.96 -91.77 -0.27 -1.26 16 5 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 6 C -0.14 -1.02 8.99 37.16 0.33 -0.68 16 7 C 0.52 5.93 7.15 -10.98 -0.08 5.85 16 8 O -0.54 -7.93 15.57 5.55 0.09 -7.84 16 9 N -0.71 -7.49 4.95 -52.47 -0.26 -7.75 16 10 C 0.15 1.79 3.22 -66.55 -0.21 1.57 16 11 H 0.11 1.47 7.40 -51.92 -0.38 1.08 16 12 C 0.02 0.31 6.17 -2.19 -0.01 0.29 16 13 N -0.48 -7.77 4.98 -231.41 -1.15 -8.92 16 14 C 0.03 0.61 5.32 -4.97 -0.03 0.58 16 15 C 0.45 10.41 7.63 -10.98 -0.08 10.33 16 16 O -0.58 -15.28 14.80 5.55 0.08 -15.19 16 17 N -0.57 -14.26 5.29 -10.96 -0.06 -14.31 16 18 C -0.30 -8.24 9.68 -14.94 -0.14 -8.38 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 20 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 22 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 C 0.02 0.28 5.67 -2.18 -0.01 0.27 16 27 C 0.08 0.97 3.29 -25.35 -0.08 0.89 16 28 H 0.08 0.86 7.36 -51.93 -0.38 0.48 16 29 O -0.38 -4.71 10.31 -35.23 -0.36 -5.07 16 30 C 0.03 0.29 10.86 101.05 1.10 1.38 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.61 7.96 -51.92 -0.41 0.20 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.55 7.82 -51.93 -0.41 0.14 16 38 H 0.06 0.38 7.56 -51.93 -0.39 -0.02 16 39 H 0.40 3.58 7.77 -40.82 -0.32 3.26 16 40 H 0.09 1.21 8.05 -51.93 -0.42 0.79 16 41 H 0.06 0.73 8.00 -51.93 -0.42 0.32 16 42 H 0.09 1.48 8.08 -51.93 -0.42 1.06 16 43 H 0.05 0.88 7.77 -51.93 -0.40 0.47 16 44 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.05 0.84 7.69 -51.93 -0.40 0.44 16 47 H 0.10 1.78 7.24 -51.93 -0.38 1.40 16 48 H 0.04 0.33 8.10 -51.93 -0.42 -0.09 16 49 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 411.47 15.07 6.20 6.20 Total: -1.00 -33.29 411.47 -6.79 -40.08 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: -8.36 Total: 11.15 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 1.69 Total: 13.58 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.75 Total: -54.79 kcal Atomic # 8 Polarization: -31.62 SS G_CDS: -0.56 Total: -32.18 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.29 -6.79 -40.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212011785.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.099 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds