Wall clock time and date at job start Wed Apr 1 2020 02:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99981 * 2 1 4 4 C 1.52998 * 109.47049 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47247 * 54.99643 * 4 3 2 6 6 C 1.53006 * 109.47046 * 294.99653 * 4 3 2 7 7 C 1.50703 * 109.47314 * 174.99959 * 4 3 2 8 8 O 1.21284 * 119.99690 * 0.02562 * 7 4 3 9 9 N 1.34775 * 120.00339 * 179.97438 * 7 4 3 10 10 C 1.46494 * 120.00127 * 179.97438 * 9 7 4 11 11 H 1.09007 * 110.28816 * 32.87907 * 10 9 7 12 12 C 1.54374 * 110.32883 * 270.64016 * 10 9 7 13 13 N 1.48551 * 104.59541 * 264.95888 * 12 10 9 14 14 C 1.46903 * 111.00202 * 200.95973 * 13 12 10 15 15 C 1.50709 * 109.47274 * 190.00006 * 14 13 12 16 16 O 1.21290 * 119.99791 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99860 * 179.97438 * 15 14 13 18 18 C 1.37094 * 119.99636 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00530 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99752 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00110 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99997 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46806 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47012 * 120.00256 * 22 20 18 25 25 H 1.48496 * 109.47223 * 240.00037 * 22 20 18 26 26 C 1.48561 * 104.22369 * 320.51345 * 13 12 10 27 27 C 1.54259 * 110.32372 * 154.99951 * 10 9 7 28 28 H 1.09002 * 110.32223 * 0.02562 * 27 10 9 29 29 O 1.42897 * 110.32853 * 237.89560 * 27 10 9 30 30 C 1.42898 * 114.00450 * 151.42375 * 29 27 10 31 31 H 1.08999 * 109.47582 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47501 * 300.00011 * 1 2 3 33 33 H 1.09000 * 109.47703 * 60.00089 * 1 2 3 34 34 H 1.09002 * 109.47513 * 59.99814 * 3 2 1 35 35 H 1.09007 * 109.47192 * 299.99835 * 3 2 1 36 36 H 1.08996 * 109.47089 * 300.00087 * 6 4 3 37 37 H 1.08999 * 109.46411 * 60.00266 * 6 4 3 38 38 H 1.08991 * 109.46845 * 180.02562 * 6 4 3 39 39 H 0.96997 * 119.99435 * 0.02562 * 9 7 4 40 40 H 1.09004 * 110.41045 * 23.73548 * 12 10 9 41 41 H 1.08995 * 110.41604 * 146.05531 * 12 10 9 42 42 H 1.09000 * 109.46869 * 309.99203 * 14 13 12 43 43 H 1.08992 * 109.47253 * 69.99759 * 14 13 12 44 44 H 0.97002 * 119.99652 * 0.02562 * 17 15 14 45 45 H 0.97007 * 120.00049 * 179.97438 * 21 20 18 46 46 H 1.09005 * 110.41198 * 280.70728 * 26 13 12 47 47 H 1.08998 * 110.41368 * 158.26250 * 26 13 12 48 48 H 1.09001 * 109.47446 * 300.00641 * 30 29 27 49 49 H 1.09005 * 109.46375 * 60.00322 * 30 29 27 50 50 H 1.09000 * 109.47054 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8507 0.5685 -0.8426 6 6 3.9962 0.5364 1.3065 7 6 4.1479 2.5560 -0.1245 8 8 3.4347 3.5337 -0.2039 9 7 5.4882 2.6960 -0.1460 10 6 6.0836 4.0290 -0.2669 11 1 5.4565 4.7695 0.2297 12 6 6.2769 4.3971 -1.7536 13 7 7.6808 4.0159 -2.0542 14 6 8.1787 4.7305 -3.2372 15 6 9.5029 4.1459 -3.6569 16 8 9.9846 3.2249 -3.0318 17 7 10.1516 4.6465 -4.7269 18 6 11.3564 4.1150 -5.1084 19 1 11.7855 3.2949 -4.5518 20 6 12.0250 4.6308 -6.2118 21 7 11.5028 5.6283 -6.8895 22 14 13.6671 3.9070 -6.7313 23 1 14.0343 2.8017 -5.8102 24 1 13.5606 3.3820 -8.1163 25 1 14.7111 4.9618 -6.6807 26 6 8.4351 4.4113 -0.8369 27 6 7.5034 4.0384 0.3362 28 1 7.7574 3.0510 0.7219 29 8 7.5949 5.0152 1.3752 30 6 8.5551 4.7008 2.3858 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8464 -0.8901 36 1 3.6809 1.1526 2.1485 37 1 3.5532 -0.4554 1.3960 38 1 5.0827 0.4508 1.3062 39 1 6.0585 1.9140 -0.0821 40 1 5.5869 3.8300 -2.3785 41 1 6.1314 5.4671 -1.9024 42 1 7.4619 4.6281 -4.0519 43 1 8.3073 5.7858 -2.9968 44 1 9.7665 5.3833 -5.2266 45 1 11.9698 5.9886 -7.6596 46 1 8.6294 5.4839 -0.8418 47 1 9.3701 3.8550 -0.7715 48 1 8.2903 3.7541 2.8567 49 1 9.5437 4.6179 1.9342 50 1 8.5634 5.4903 3.1372 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212011785.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:24:41 Heat of formation + Delta-G solvation = -179.528991 kcal Electronic energy + Delta-G solvation = -30665.222044 eV Core-core repulsion = 26305.904340 eV Total energy + Delta-G solvation = -4359.317704 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.56074 -40.50467 -39.66515 -38.72577 -37.74501 -35.98780 -35.45075 -34.61498 -33.27498 -31.61341 -29.41285 -28.47112 -28.16387 -27.22440 -26.68369 -25.96860 -24.17549 -22.68503 -21.84736 -21.15616 -20.84732 -19.87938 -18.59032 -18.19508 -17.76565 -17.48272 -17.04241 -16.78322 -16.71916 -16.54881 -16.22605 -16.02658 -15.79972 -15.73028 -15.46426 -15.21664 -15.08290 -14.77964 -14.34185 -14.14170 -13.85326 -13.66203 -13.49990 -13.29466 -13.19237 -13.17127 -12.94123 -12.79651 -12.62490 -12.42252 -12.39886 -12.39012 -12.28355 -12.11308 -11.86875 -11.85015 -11.48520 -10.96823 -10.72264 -10.65930 -10.40619 -10.12591 -10.00301 -9.49600 -8.46027 -5.94575 1.36764 1.41929 1.53567 1.56074 1.82618 2.05543 2.27441 2.54268 2.85154 3.02437 3.19877 3.30628 3.46510 3.56346 3.66431 3.87723 3.89982 4.02195 4.21079 4.24548 4.30982 4.33234 4.37053 4.47408 4.48249 4.51190 4.51859 4.54213 4.61838 4.62738 4.67818 4.70138 4.77061 4.84864 4.86437 4.90638 4.92395 5.00271 5.30277 5.35732 5.41650 5.66736 5.74311 6.04038 6.14880 6.15665 6.45142 6.60662 7.13434 7.13938 7.56893 8.12063 8.71671 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.002213 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.224725 B =12648.150880 C =13848.536621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.083 3.917 4 C -0.105 4.105 5 H 0.118 0.882 6 C -0.135 4.135 7 C 0.527 3.473 8 O -0.577 6.577 9 N -0.702 5.702 10 C 0.153 3.847 11 H 0.101 0.899 12 C 0.027 3.973 13 N -0.492 5.492 14 C 0.045 3.955 15 C 0.445 3.555 16 O -0.612 6.612 17 N -0.576 5.576 18 C -0.329 4.329 19 H 0.081 0.919 20 C -0.016 4.016 21 N -0.922 5.922 22 Si 0.993 3.007 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.272 1.272 26 C 0.020 3.980 27 C 0.092 3.908 28 H 0.095 0.905 29 O -0.394 6.394 30 C 0.024 3.976 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.415 0.585 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.395 0.605 45 H 0.277 0.723 46 H 0.048 0.952 47 H 0.075 0.925 48 H 0.059 0.941 49 H 0.042 0.958 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.116 -6.278 17.315 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C 0.006 3.994 4 C -0.126 4.126 5 H 0.136 0.864 6 C -0.193 4.193 7 C 0.314 3.686 8 O -0.456 6.456 9 N -0.354 5.354 10 C 0.047 3.953 11 H 0.119 0.881 12 C -0.102 4.102 13 N -0.217 5.217 14 C -0.087 4.087 15 C 0.233 3.767 16 O -0.498 6.498 17 N -0.214 5.214 18 C -0.458 4.458 19 H 0.098 0.902 20 C -0.215 4.215 21 N -0.563 5.563 22 Si 0.817 3.183 23 H -0.196 1.196 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.109 4.109 27 C 0.032 3.968 28 H 0.113 0.887 29 O -0.312 6.312 30 C -0.072 4.072 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.252 0.748 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.127 0.873 43 H 0.089 0.911 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.067 0.933 47 H 0.094 0.906 48 H 0.077 0.923 49 H 0.061 0.939 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.170 -6.661 17.411 25.344 hybrid contribution 0.927 0.948 -0.797 1.547 sum -16.243 -5.713 16.614 23.927 Atomic orbital electron populations 1.22929 0.79380 1.03995 1.00712 1.87774 1.21417 1.27652 1.95594 1.22142 0.91944 0.84299 1.01017 1.21167 0.94852 0.93197 1.03416 0.86369 1.21715 1.02311 1.01538 0.93697 1.20751 0.82077 0.91259 0.74479 1.90701 1.61689 1.41993 1.51248 1.45844 1.06565 1.09138 1.73852 1.21440 0.93404 0.85978 0.94472 0.88069 1.23561 0.90171 1.00317 0.96153 1.65074 1.02102 1.52956 1.01567 1.21948 0.94764 0.96476 0.95486 1.20612 0.87964 0.85733 0.82438 1.90467 1.70061 1.32576 1.56653 1.41941 1.19686 1.33010 1.26718 1.19688 0.97494 1.16736 1.11921 0.90150 1.26057 1.03062 0.96582 0.95830 1.69686 1.40908 1.25635 1.20087 0.84863 0.77182 0.78131 0.78113 1.19644 1.19729 1.19715 1.23556 0.98070 0.99400 0.89850 1.22930 0.93148 0.93137 0.87543 0.88716 1.87894 1.61068 1.46674 1.35613 1.23032 0.91238 1.02555 0.90396 0.87942 0.93275 0.93669 0.92827 0.93385 0.92465 0.90173 0.90530 0.74770 0.89462 0.91893 0.87286 0.91136 0.77132 0.91383 0.93335 0.90649 0.92280 0.93920 0.87940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.40 -7.19 10.24 -148.98 -1.53 -8.71 16 3 C 0.08 1.52 4.67 71.98 0.34 1.86 16 4 C -0.11 -1.73 2.96 -11.54 -0.03 -1.76 16 5 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 6 C -0.14 -1.69 8.99 71.98 0.65 -1.04 16 7 C 0.53 11.29 7.15 87.66 0.63 11.92 16 8 O -0.58 -16.56 15.57 -3.04 -0.05 -16.60 16 9 N -0.70 -13.69 4.95 -438.30 -2.17 -15.86 16 10 C 0.15 3.57 3.22 45.89 0.15 3.71 16 11 H 0.10 2.61 7.40 -2.38 -0.02 2.59 16 12 C 0.03 0.69 6.17 86.45 0.53 1.23 16 13 N -0.49 -15.60 4.98 -886.05 -4.41 -20.01 16 14 C 0.04 1.57 5.32 85.56 0.46 2.02 16 15 C 0.45 21.03 7.63 87.66 0.67 21.70 16 16 O -0.61 -33.00 14.80 -3.06 -0.05 -33.05 16 17 N -0.58 -29.53 5.29 -306.98 -1.62 -31.15 16 18 C -0.33 -18.58 9.68 84.04 0.81 -17.76 16 19 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 20 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 21 N -0.92 -49.93 13.05 21.66 0.28 -49.64 16 22 Si 0.99 42.85 29.55 68.60 2.03 44.87 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 C 0.02 0.60 5.67 86.45 0.49 1.09 16 27 C 0.09 2.14 3.29 31.49 0.10 2.25 16 28 H 0.10 1.90 7.36 -2.39 -0.02 1.88 16 29 O -0.39 -9.20 10.31 -148.98 -1.54 -10.74 16 30 C 0.02 0.40 10.86 113.37 1.23 1.63 16 31 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 0.97 7.96 -2.38 -0.02 0.96 16 36 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.98 7.82 -2.39 -0.02 0.96 16 38 H 0.08 0.73 7.56 -2.39 -0.02 0.72 16 39 H 0.41 6.48 7.77 -92.71 -0.72 5.76 16 40 H 0.09 2.29 8.05 -2.39 -0.02 2.27 16 41 H 0.06 1.56 8.00 -2.39 -0.02 1.54 16 42 H 0.11 3.42 8.08 -2.39 -0.02 3.40 16 43 H 0.07 2.24 7.77 -2.39 -0.02 2.22 16 44 H 0.40 19.38 7.90 -92.71 -0.73 18.64 16 45 H 0.28 14.01 8.31 -92.70 -0.77 13.24 16 46 H 0.05 1.50 7.69 -2.38 -0.02 1.48 16 47 H 0.08 2.69 7.24 -2.39 -0.02 2.67 16 48 H 0.06 0.81 8.10 -2.39 -0.02 0.79 16 49 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 50 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -71.87 411.47 -1.81 -73.69 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: -0.50 Total: 39.18 kcal Atomic # 6 Polarization: 20.29 SS G_CDS: 7.73 Total: 28.02 kcal Atomic # 7 Polarization: -108.74 SS G_CDS: -7.92 Total: -116.66 kcal Atomic # 8 Polarization: -65.95 SS G_CDS: -3.15 Total: -69.10 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -71.87 -1.81 -73.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212011785.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.844 kcal (2) G-P(sol) polarization free energy of solvation -71.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds