Wall clock time and date at job start Wed Apr 1 2020 02:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00139 * 2 1 4 4 C 1.53000 * 109.47100 * 180.02562 * 3 2 1 5 5 O 1.42894 * 109.47360 * 64.99947 * 4 3 2 6 6 C 1.42895 * 114.00461 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47303 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00345 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00172 * 179.97438 * 7 6 5 10 10 C 1.47025 * 125.64502 * 359.97438 * 9 7 6 11 11 C 1.54327 * 107.27105 * 178.97339 * 10 9 7 12 12 H 1.08999 * 110.72110 * 96.34588 * 11 10 9 13 13 C 1.52997 * 110.72340 * 219.44464 * 11 10 9 14 14 C 1.55163 * 102.94086 * 337.81105 * 11 10 9 15 15 H 1.08999 * 111.00142 * 277.42342 * 14 11 10 16 16 N 1.46903 * 111.00106 * 153.57745 * 14 11 10 17 17 C 1.46906 * 110.99493 * 155.00047 * 16 14 11 18 18 C 1.50707 * 109.46714 * 179.97438 * 17 16 14 19 19 O 1.21291 * 119.99886 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99579 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99357 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00460 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99571 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00010 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99912 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47001 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46893 * 120.00111 * 25 23 21 28 28 H 1.48498 * 109.47310 * 239.99927 * 25 23 21 29 29 C 1.47421 * 125.65319 * 180.02562 * 9 7 6 30 30 H 1.09012 * 109.47173 * 299.99838 * 1 2 3 31 31 H 1.08998 * 109.47167 * 59.99274 * 1 2 3 32 32 H 1.08993 * 109.47632 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46556 * 60.00368 * 3 2 1 34 34 H 1.08998 * 109.47133 * 300.00413 * 3 2 1 35 35 H 1.09000 * 109.46954 * 305.00031 * 4 3 2 36 36 H 1.08997 * 109.47098 * 185.00600 * 4 3 2 37 37 H 1.09002 * 109.47155 * 59.99920 * 6 5 4 38 38 H 1.08995 * 109.46809 * 300.00212 * 6 5 4 39 39 H 1.08999 * 109.88484 * 59.56157 * 10 9 7 40 40 H 1.08998 * 110.01061 * 298.46090 * 10 9 7 41 41 H 1.09002 * 109.47153 * 58.54532 * 13 11 10 42 42 H 1.09001 * 109.46832 * 298.54723 * 13 11 10 43 43 H 1.09004 * 109.47261 * 178.54704 * 13 11 10 44 44 H 1.00905 * 110.99839 * 278.94538 * 16 14 11 45 45 H 1.09003 * 109.46794 * 299.99011 * 17 16 14 46 46 H 1.08996 * 109.47360 * 59.99813 * 17 16 14 47 47 H 0.96997 * 120.00156 * 359.97438 * 20 18 17 48 48 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 49 49 H 1.09007 * 110.36440 * 322.93039 * 29 9 7 50 50 H 1.08996 * 110.37385 * 85.14226 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3811 0.4201 -1.3251 7 6 5.7194 -0.2233 -2.6452 8 8 4.8348 -0.5160 -3.4215 9 7 7.0050 -0.4725 -2.9636 10 6 8.1708 -0.1691 -2.1207 11 6 9.4240 -0.6518 -2.8810 12 1 9.8847 0.1714 -3.4270 13 6 10.4284 -1.2900 -1.9193 14 6 8.8506 -1.7114 -3.8588 15 1 8.7298 -2.6749 -3.3637 16 7 9.6965 -1.8379 -5.0532 17 6 9.5437 -3.1632 -5.6683 18 6 10.4241 -3.2552 -6.8881 19 8 11.1107 -2.3096 -7.2132 20 7 10.4483 -4.3881 -7.6176 21 6 11.2488 -4.4716 -8.7276 22 1 11.8595 -3.6294 -9.0175 23 6 11.2742 -5.6399 -9.4794 24 7 10.5314 -6.6649 -9.1263 25 14 12.3643 -5.7535 -10.9921 26 1 13.0957 -4.4737 -11.1724 27 1 13.3393 -6.8600 -10.8177 28 1 11.5250 -6.0173 -12.1884 29 6 7.4754 -1.0936 -4.2151 30 1 -0.3634 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.8514 0.5681 0.8409 36 1 3.9785 2.1764 0.0890 37 1 5.7358 -0.2120 -0.5109 38 1 5.8621 1.3962 -1.2632 39 1 8.0882 -0.6960 -1.1701 40 1 8.2346 0.9047 -1.9449 41 1 9.9575 -2.1284 -1.4060 42 1 10.7505 -0.5500 -1.1866 43 1 11.2925 -1.6463 -2.4801 44 1 9.4957 -1.1055 -5.7176 45 1 9.8336 -3.9318 -4.9519 46 1 8.5038 -3.3111 -5.9592 47 1 9.8995 -5.1444 -7.3574 48 1 10.5490 -7.4803 -9.6514 49 1 6.7823 -1.8710 -4.5367 50 1 7.5868 -0.3397 -4.9944 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214353590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:15 Heat of formation + Delta-G solvation = -152.642582 kcal Electronic energy + Delta-G solvation = -29520.702654 eV Core-core repulsion = 25162.550832 eV Total energy + Delta-G solvation = -4358.151822 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.44776 -38.97157 -38.38513 -37.88809 -37.13225 -34.77777 -33.80705 -32.62360 -31.24037 -31.16654 -29.60555 -27.71693 -26.62526 -26.52876 -25.77012 -24.00690 -22.99656 -22.29879 -20.62782 -19.71412 -19.21713 -17.90338 -17.66755 -17.31193 -17.15422 -16.65189 -16.21746 -15.97955 -15.64504 -15.50068 -15.28161 -14.90693 -14.55195 -14.48630 -14.25234 -13.82516 -13.61591 -13.40565 -13.32109 -13.23860 -12.92904 -12.71431 -12.48409 -12.34883 -12.23398 -12.12961 -11.81859 -11.67408 -11.52822 -11.50773 -11.28077 -11.11388 -11.03623 -10.82221 -10.33893 -10.22228 -10.14925 -10.08056 -9.94805 -9.52002 -8.90160 -8.48778 -8.12392 -7.96241 -6.41523 -3.82449 2.36292 2.40262 3.16926 3.27626 3.34485 3.34883 3.44841 3.89906 4.00181 4.17191 4.25501 4.37250 4.51669 4.63901 4.67603 4.70798 4.72899 4.82946 4.87895 4.92555 4.99748 4.99999 5.04532 5.07432 5.15803 5.23791 5.25664 5.26277 5.33125 5.38017 5.55749 5.61278 5.68880 5.76087 5.83232 5.93096 5.97564 6.08930 6.19173 6.27017 6.60102 6.77147 7.12657 7.24774 7.54563 7.55740 7.96429 8.06241 8.60767 9.17890 9.54106 10.05015 10.76163 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.001677 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.503050 B =16693.211640 C =17829.357232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.062 3.938 5 O -0.355 6.355 6 C 0.050 3.950 7 C 0.528 3.472 8 O -0.516 6.516 9 N -0.616 5.616 10 C 0.099 3.901 11 C -0.091 4.091 12 H 0.093 0.907 13 C -0.137 4.137 14 C 0.081 3.919 15 H 0.094 0.906 16 N -0.649 5.649 17 C 0.048 3.952 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C 0.078 3.922 30 H 0.039 0.961 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.353 0.647 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.079 0.921 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.163 14.945 23.771 31.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.274 6.274 6 C -0.030 4.030 7 C 0.315 3.685 8 O -0.391 6.391 9 N -0.353 5.353 10 C -0.024 4.024 11 C -0.111 4.111 12 H 0.111 0.889 13 C -0.194 4.194 14 C -0.031 4.031 15 H 0.112 0.888 16 N -0.281 5.281 17 C -0.085 4.085 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.122 0.878 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.047 4.047 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.174 0.826 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.747 14.847 23.243 30.383 hybrid contribution -0.748 -0.208 -0.741 1.074 sum -13.495 14.640 22.501 30.046 Atomic orbital electron populations 1.22755 0.80918 1.03020 0.99840 1.87980 1.19733 1.27079 1.95361 1.22538 0.92052 0.85770 1.01016 1.22604 0.93845 0.97584 0.87470 1.88087 1.19379 1.82081 1.37807 1.22141 0.84164 1.00706 0.95939 1.19882 0.81126 0.79348 0.88156 1.90764 1.45892 1.51130 1.51278 1.48287 1.05028 1.61938 1.20053 1.22290 0.85065 1.00555 0.94470 1.22201 0.93984 0.98753 0.96149 0.88872 1.21690 0.99344 1.00049 0.98337 1.22908 0.88545 0.98726 0.92936 0.88755 1.60152 1.54629 1.04496 1.08809 1.21764 0.98194 0.91841 0.96664 1.19761 0.87071 0.84643 0.85934 1.90526 1.46231 1.38036 1.72009 1.41868 1.40059 1.13326 1.24671 1.19758 1.20606 1.00520 1.02028 0.87831 1.25272 0.97960 0.95082 0.99634 1.69625 1.39909 1.04276 1.40392 0.85796 0.79429 0.78451 0.80639 1.19206 1.20750 1.20774 1.23155 0.97178 0.97753 0.86585 0.94224 0.93897 0.89472 0.91624 0.92184 0.92102 0.91479 0.90182 0.90336 0.91070 0.91212 0.92786 0.92706 0.90911 0.82637 0.89395 0.93568 0.77433 0.91904 0.90209 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.91 10.67 -40.08 -0.43 -4.34 16 3 C 0.06 0.46 6.32 37.16 0.23 0.70 16 4 C 0.06 0.45 6.32 37.16 0.23 0.68 16 5 O -0.36 -4.10 9.84 -59.73 -0.59 -4.69 16 6 C 0.05 0.45 5.61 36.00 0.20 0.66 16 7 C 0.53 6.82 7.93 -10.99 -0.09 6.73 16 8 O -0.52 -9.25 16.76 -14.35 -0.24 -9.49 16 9 N -0.62 -6.76 3.33 -170.52 -0.57 -7.33 16 10 C 0.10 0.76 6.08 -3.06 -0.02 0.74 16 11 C -0.09 -0.83 3.24 -88.78 -0.29 -1.12 16 12 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 13 C -0.14 -1.13 9.13 37.16 0.34 -0.79 16 14 C 0.08 0.93 2.83 -65.56 -0.19 0.74 16 15 H 0.09 1.07 7.72 -51.93 -0.40 0.66 16 16 N -0.65 -9.69 6.04 -105.71 -0.64 -10.33 16 17 C 0.05 0.81 6.03 -4.97 -0.03 0.78 16 18 C 0.44 10.23 7.82 -10.98 -0.09 10.14 16 19 O -0.58 -15.58 15.78 5.55 0.09 -15.49 16 20 N -0.56 -14.20 5.29 -10.96 -0.06 -14.26 16 21 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 23 C 0.02 0.60 5.50 -17.46 -0.10 0.50 16 24 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 25 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 C 0.08 0.94 6.50 -2.53 -0.02 0.93 16 30 H 0.04 0.19 8.14 -51.92 -0.42 -0.23 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.43 7.82 -51.93 -0.41 0.03 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.42 8.13 -51.93 -0.42 0.00 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.35 5.52 7.89 -39.29 -0.31 5.21 16 45 H 0.09 1.37 8.09 -51.93 -0.42 0.95 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.39 9.50 7.90 -40.82 -0.32 9.17 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.08 1.09 8.04 -51.93 -0.42 0.67 16 50 H 0.07 0.89 7.75 -51.93 -0.40 0.49 16 LS Contribution 418.41 15.07 6.31 6.31 Total: -1.00 -36.44 418.41 -7.79 -44.22 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -8.53 Total: 9.69 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: 1.17 Total: 13.51 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.54 Total: -55.78 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -1.17 Total: -34.01 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.44 -7.79 -44.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214353590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.422 kcal (2) G-P(sol) polarization free energy of solvation -36.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds