Wall clock time and date at job start Wed Apr 1 2020 02:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00139 * 2 1 4 4 C 1.53000 * 109.47100 * 180.02562 * 3 2 1 5 5 O 1.42894 * 109.47360 * 64.99947 * 4 3 2 6 6 C 1.42895 * 114.00461 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47303 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00345 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00172 * 179.97438 * 7 6 5 10 10 C 1.47025 * 125.64502 * 359.97438 * 9 7 6 11 11 C 1.54327 * 107.27105 * 178.97339 * 10 9 7 12 12 H 1.08999 * 110.72110 * 96.34588 * 11 10 9 13 13 C 1.52997 * 110.72340 * 219.44464 * 11 10 9 14 14 C 1.55163 * 102.94086 * 337.81105 * 11 10 9 15 15 H 1.08999 * 111.00142 * 277.42342 * 14 11 10 16 16 N 1.46903 * 111.00106 * 153.57745 * 14 11 10 17 17 C 1.46906 * 110.99493 * 155.00047 * 16 14 11 18 18 C 1.50707 * 109.46714 * 179.97438 * 17 16 14 19 19 O 1.21291 * 119.99886 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99579 * 179.97438 * 18 17 16 21 21 C 1.37101 * 119.99357 * 179.97438 * 20 18 17 22 22 H 1.07999 * 120.00460 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99571 * 179.97438 * 21 20 18 24 24 N 1.31417 * 120.00010 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99912 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47001 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46893 * 120.00111 * 25 23 21 28 28 H 1.48498 * 109.47310 * 239.99927 * 25 23 21 29 29 C 1.47421 * 125.65319 * 180.02562 * 9 7 6 30 30 H 1.09012 * 109.47173 * 299.99838 * 1 2 3 31 31 H 1.08998 * 109.47167 * 59.99274 * 1 2 3 32 32 H 1.08993 * 109.47632 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46556 * 60.00368 * 3 2 1 34 34 H 1.08998 * 109.47133 * 300.00413 * 3 2 1 35 35 H 1.09000 * 109.46954 * 305.00031 * 4 3 2 36 36 H 1.08997 * 109.47098 * 185.00600 * 4 3 2 37 37 H 1.09002 * 109.47155 * 59.99920 * 6 5 4 38 38 H 1.08995 * 109.46809 * 300.00212 * 6 5 4 39 39 H 1.08999 * 109.88484 * 59.56157 * 10 9 7 40 40 H 1.08998 * 110.01061 * 298.46090 * 10 9 7 41 41 H 1.09002 * 109.47153 * 58.54532 * 13 11 10 42 42 H 1.09001 * 109.46832 * 298.54723 * 13 11 10 43 43 H 1.09004 * 109.47261 * 178.54704 * 13 11 10 44 44 H 1.00905 * 110.99839 * 278.94538 * 16 14 11 45 45 H 1.09003 * 109.46794 * 299.99011 * 17 16 14 46 46 H 1.08996 * 109.47360 * 59.99813 * 17 16 14 47 47 H 0.96997 * 120.00156 * 359.97438 * 20 18 17 48 48 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 49 49 H 1.09007 * 110.36440 * 322.93039 * 29 9 7 50 50 H 1.08996 * 110.37385 * 85.14226 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3811 0.4201 -1.3251 7 6 5.7194 -0.2233 -2.6452 8 8 4.8348 -0.5160 -3.4215 9 7 7.0050 -0.4725 -2.9636 10 6 8.1708 -0.1691 -2.1207 11 6 9.4240 -0.6518 -2.8810 12 1 9.8847 0.1714 -3.4270 13 6 10.4284 -1.2900 -1.9193 14 6 8.8506 -1.7114 -3.8588 15 1 8.7298 -2.6749 -3.3637 16 7 9.6965 -1.8379 -5.0532 17 6 9.5437 -3.1632 -5.6683 18 6 10.4241 -3.2552 -6.8881 19 8 11.1107 -2.3096 -7.2132 20 7 10.4483 -4.3881 -7.6176 21 6 11.2488 -4.4716 -8.7276 22 1 11.8595 -3.6294 -9.0175 23 6 11.2742 -5.6399 -9.4794 24 7 10.5314 -6.6649 -9.1263 25 14 12.3643 -5.7535 -10.9921 26 1 13.0957 -4.4737 -11.1724 27 1 13.3393 -6.8600 -10.8177 28 1 11.5250 -6.0173 -12.1884 29 6 7.4754 -1.0936 -4.2151 30 1 -0.3634 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.8514 0.5681 0.8409 36 1 3.9785 2.1764 0.0890 37 1 5.7358 -0.2120 -0.5109 38 1 5.8621 1.3962 -1.2632 39 1 8.0882 -0.6960 -1.1701 40 1 8.2346 0.9047 -1.9449 41 1 9.9575 -2.1284 -1.4060 42 1 10.7505 -0.5500 -1.1866 43 1 11.2925 -1.6463 -2.4801 44 1 9.4957 -1.1055 -5.7176 45 1 9.8336 -3.9318 -4.9519 46 1 8.5038 -3.3111 -5.9592 47 1 9.8995 -5.1444 -7.3574 48 1 10.5490 -7.4803 -9.6514 49 1 6.7823 -1.8710 -4.5367 50 1 7.5868 -0.3397 -4.9944 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001214353590.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:14 Heat of formation + Delta-G solvation = -181.659767 kcal Electronic energy + Delta-G solvation = -29521.960933 eV Core-core repulsion = 25162.550832 eV Total energy + Delta-G solvation = -4359.410101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.35885 -40.19987 -39.52632 -38.90899 -37.89453 -36.22749 -35.57338 -33.53877 -33.23130 -31.78618 -30.55724 -28.76216 -27.47736 -27.22329 -26.92318 -25.62358 -23.51685 -23.25461 -21.59418 -20.98018 -20.51945 -19.91040 -18.44452 -18.02340 -17.95502 -17.69307 -17.21185 -17.06309 -16.73816 -16.38521 -16.32288 -16.15475 -15.86722 -15.66632 -15.33521 -15.31552 -14.79201 -14.37572 -14.29675 -14.13330 -13.83145 -13.70651 -13.50601 -13.37591 -13.30621 -13.09644 -13.01034 -12.91637 -12.83288 -12.41001 -12.36549 -12.11674 -12.08719 -12.03299 -11.87049 -11.64424 -11.51758 -10.95501 -10.72950 -10.63175 -10.34932 -10.02241 -9.80631 -9.37613 -8.47275 -5.96169 1.36510 1.41828 1.47925 1.55809 1.57670 2.04159 2.28674 2.75326 2.86981 2.94244 3.19942 3.33839 3.49486 3.61309 3.75886 3.92604 4.06528 4.17388 4.19030 4.20705 4.25193 4.28550 4.33114 4.42184 4.43307 4.46626 4.52831 4.56081 4.57744 4.57920 4.69847 4.74510 4.77165 4.81138 4.84663 4.94096 5.06210 5.18785 5.35643 5.40949 5.52964 5.86882 6.03168 6.06883 6.25167 6.29391 6.42179 6.58790 7.04808 7.11831 7.55271 8.09977 8.70310 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017734 B = 0.001677 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.503050 B =16693.211640 C =17829.357232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.055 3.945 4 C 0.056 3.944 5 O -0.399 6.399 6 C 0.056 3.944 7 C 0.518 3.482 8 O -0.582 6.582 9 N -0.612 5.612 10 C 0.100 3.900 11 C -0.086 4.086 12 H 0.087 0.913 13 C -0.132 4.132 14 C 0.085 3.915 15 H 0.101 0.899 16 N -0.656 5.656 17 C 0.063 3.937 18 C 0.439 3.561 19 O -0.621 6.621 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.270 1.270 28 H -0.272 1.272 29 C 0.078 3.922 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.347 0.653 45 H 0.108 0.892 46 H 0.061 0.939 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.057 0.943 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.794 15.879 26.330 33.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.022 4.022 4 C -0.019 4.019 5 O -0.319 6.319 6 C -0.023 4.023 7 C 0.307 3.693 8 O -0.461 6.461 9 N -0.347 5.347 10 C -0.021 4.021 11 C -0.105 4.105 12 H 0.106 0.894 13 C -0.190 4.190 14 C -0.026 4.026 15 H 0.119 0.881 16 N -0.287 5.287 17 C -0.070 4.070 18 C 0.226 3.774 19 O -0.508 6.508 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.198 1.198 29 C -0.047 4.047 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.117 0.883 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.166 0.834 45 H 0.126 0.874 46 H 0.079 0.921 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.076 0.924 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.360 15.783 25.858 32.719 hybrid contribution -0.875 -0.448 -1.491 1.786 sum -13.235 15.335 24.367 31.687 Atomic orbital electron populations 1.22888 0.79738 1.03524 1.00848 1.87924 1.21327 1.29013 1.95601 1.22790 0.92456 0.84911 1.02004 1.22881 0.93688 0.99178 0.86187 1.88041 1.20811 1.82967 1.40037 1.22269 0.83661 1.02587 0.93821 1.20783 0.80760 0.78571 0.89138 1.90728 1.47811 1.54057 1.53538 1.48366 1.05656 1.60858 1.19820 1.22533 0.82442 1.02759 0.94397 1.22180 0.94952 0.97635 0.95749 0.89425 1.21654 0.98111 1.00951 0.98252 1.22963 0.87801 0.99963 0.91902 0.88119 1.60203 1.55956 1.03129 1.09409 1.21618 0.97297 0.93772 0.94283 1.20811 0.86569 0.83245 0.86750 1.90493 1.47852 1.39124 1.73286 1.41945 1.40242 1.14190 1.24691 1.19724 1.22033 1.00613 1.03955 0.90178 1.26060 0.98930 0.94324 1.02020 1.69687 1.40501 1.04623 1.41375 0.84854 0.77842 0.78309 0.77227 1.19675 1.19550 1.19754 1.23011 0.97098 0.97164 0.87467 0.92072 0.93975 0.89355 0.88545 0.93146 0.91091 0.88302 0.87337 0.86771 0.88301 0.88325 0.91896 0.90339 0.93285 0.83353 0.87365 0.92103 0.77031 0.91327 0.92436 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.42 -8.39 10.67 -144.34 -1.54 -9.93 16 3 C 0.05 0.73 6.32 71.98 0.45 1.18 16 4 C 0.06 0.68 6.32 71.98 0.45 1.13 16 5 O -0.40 -8.71 9.84 -125.56 -1.24 -9.95 16 6 C 0.06 0.85 5.61 71.24 0.40 1.25 16 7 C 0.52 12.96 7.93 87.66 0.69 13.65 16 8 O -0.58 -21.64 16.76 16.00 0.27 -21.37 16 9 N -0.61 -12.46 3.33 -811.79 -2.70 -15.16 16 10 C 0.10 1.15 6.08 86.73 0.53 1.68 16 11 C -0.09 -1.34 3.24 -9.60 -0.03 -1.37 16 12 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 13 C -0.13 -1.80 9.13 71.98 0.66 -1.14 16 14 C 0.08 1.85 2.83 46.31 0.13 1.98 16 15 H 0.10 2.10 7.72 -2.39 -0.02 2.08 16 16 N -0.66 -19.42 6.04 -488.36 -2.95 -22.37 16 17 C 0.06 2.12 6.03 85.56 0.52 2.63 16 18 C 0.44 20.80 7.82 87.66 0.69 21.49 16 19 O -0.62 -34.12 15.78 -3.06 -0.05 -34.17 16 20 N -0.57 -29.66 5.29 -306.98 -1.62 -31.28 16 21 C -0.33 -19.11 9.68 84.04 0.81 -18.29 16 22 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -50.28 13.05 21.66 0.28 -50.00 16 25 Si 0.99 43.33 29.55 68.60 2.03 45.35 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 29 C 0.08 1.89 6.50 86.86 0.56 2.45 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.49 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 0.68 7.82 -2.39 -0.02 0.67 16 40 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 42 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.35 11.04 7.89 -89.69 -0.71 10.33 16 45 H 0.11 3.25 8.09 -2.39 -0.02 3.23 16 46 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.40 19.54 7.90 -92.71 -0.73 18.81 16 48 H 0.28 14.15 8.31 -92.70 -0.77 13.38 16 49 H 0.06 1.64 8.04 -2.38 -0.02 1.62 16 50 H 0.06 1.64 7.75 -2.39 -0.02 1.62 16 Total: -1.00 -83.62 418.41 -0.43 -84.05 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: -0.50 Total: 36.86 kcal Atomic # 6 Polarization: 20.37 SS G_CDS: 7.58 Total: 27.96 kcal Atomic # 7 Polarization: -111.81 SS G_CDS: -6.99 Total: -118.80 kcal Atomic # 8 Polarization: -72.86 SS G_CDS: -2.56 Total: -75.42 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -83.62 -0.43 -84.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214353590.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.611 kcal (2) G-P(sol) polarization free energy of solvation -83.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds