Wall clock time and date at job start Wed Apr 1 2020 02:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42905 * 113.99838 * 2 1 4 4 C 1.52999 * 109.47020 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.47157 * 54.99738 * 4 3 2 6 6 O 1.42898 * 109.46974 * 294.99591 * 4 3 2 7 7 C 1.42901 * 113.99868 * 150.00011 * 6 4 3 8 8 C 1.50704 * 109.46906 * 174.99957 * 4 3 2 9 9 O 1.21281 * 119.99594 * 114.99581 * 8 4 3 10 10 N 1.34773 * 120.00039 * 294.99902 * 8 4 3 11 11 C 1.48141 * 127.83857 * 0.02562 * 10 8 4 12 12 C 1.54384 * 104.61841 * 219.58494 * 11 10 8 13 13 H 1.09002 * 110.34087 * 95.00593 * 12 11 10 14 14 C 1.53002 * 110.34396 * 217.26001 * 12 11 10 15 15 C 1.54286 * 104.96107 * 336.13319 * 12 11 10 16 16 H 1.08996 * 110.34476 * 241.12702 * 15 12 11 17 17 N 1.46900 * 110.33951 * 118.97651 * 15 12 11 18 18 C 1.46901 * 110.99656 * 155.00353 * 17 15 12 19 19 C 1.50707 * 109.46861 * 179.97438 * 18 17 15 20 20 O 1.21291 * 120.00295 * 359.97438 * 19 18 17 21 21 N 1.34775 * 119.99681 * 179.97438 * 19 18 17 22 22 C 1.37093 * 119.99816 * 179.97438 * 21 19 18 23 23 H 1.08005 * 120.00298 * 359.97438 * 22 21 19 24 24 C 1.38956 * 120.00003 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99953 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99940 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47065 * 90.00097 * 26 24 22 28 28 H 1.48497 * 109.47159 * 210.00255 * 26 24 22 29 29 H 1.48500 * 109.47259 * 330.00212 * 26 24 22 30 30 C 1.48150 * 127.83762 * 180.02562 * 10 8 4 31 31 H 1.08998 * 109.47111 * 300.00487 * 1 2 3 32 32 H 1.09002 * 109.47091 * 60.00178 * 1 2 3 33 33 H 1.08993 * 109.46478 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47016 * 59.99515 * 3 2 1 35 35 H 1.09000 * 109.47012 * 300.00090 * 3 2 1 36 36 H 1.08999 * 109.46970 * 300.00452 * 7 6 4 37 37 H 1.09007 * 109.46811 * 60.00241 * 7 6 4 38 38 H 1.08997 * 109.47215 * 180.02562 * 7 6 4 39 39 H 1.09006 * 110.41042 * 100.80325 * 11 10 8 40 40 H 1.09007 * 110.40752 * 338.37282 * 11 10 8 41 41 H 1.09004 * 109.46776 * 175.53596 * 14 12 11 42 42 H 1.08991 * 109.47640 * 295.53692 * 14 12 11 43 43 H 1.09000 * 109.47101 * 55.54066 * 14 12 11 44 44 H 1.00903 * 111.00041 * 278.95256 * 17 15 12 45 45 H 1.08995 * 109.47333 * 299.99337 * 18 17 15 46 46 H 1.09000 * 109.47112 * 59.99686 * 18 17 15 47 47 H 0.97001 * 119.99985 * 0.02562 * 21 19 18 48 48 H 0.97001 * 119.99535 * 180.02562 * 25 24 22 49 49 H 1.09001 * 110.40703 * 21.63048 * 30 10 8 50 50 H 1.08996 * 110.40508 * 259.19762 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 1 3.8515 0.5683 -0.8408 6 8 3.9649 0.5798 1.2220 7 6 5.1682 -0.1815 1.1019 8 6 4.1480 2.5561 -0.1232 9 8 4.8061 3.0108 0.7884 10 7 3.9644 3.2772 -1.2469 11 6 3.1991 2.8957 -2.4566 12 6 4.0466 3.4205 -3.6355 13 1 4.6932 2.6309 -4.0183 14 6 3.1398 3.9527 -4.7470 15 6 4.8926 4.5648 -3.0394 16 1 4.6622 5.5060 -3.5385 17 7 6.3241 4.2593 -3.1632 18 6 7.1260 5.4900 -3.1738 19 6 8.5857 5.1374 -3.3010 20 8 8.9247 3.9752 -3.3751 21 7 9.5145 6.1136 -3.3325 22 6 10.8424 5.7928 -3.4478 23 1 11.1443 4.7579 -3.5129 24 6 11.7999 6.7992 -3.4808 25 7 11.4327 8.0584 -3.4011 26 14 13.6093 6.3622 -3.6385 27 1 13.9808 6.3032 -5.0750 28 1 14.4294 7.3957 -2.9571 29 1 13.8559 5.0401 -3.0088 30 6 4.4822 4.6312 -1.5526 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0276 -0.0005 34 1 1.6886 1.8464 0.8899 35 1 1.6886 1.8464 -0.8900 36 1 5.0195 -0.9845 0.3801 37 1 5.9761 0.4670 0.7628 38 1 5.4266 -0.6079 2.0712 39 1 2.2185 3.3718 -2.4519 40 1 3.0961 1.8121 -2.5152 41 1 3.7512 4.3910 -5.5359 42 1 2.5493 3.1337 -5.1576 43 1 2.4731 4.7126 -4.3394 44 1 6.6260 3.6374 -2.4281 45 1 6.8271 6.1112 -4.0180 46 1 6.9644 6.0371 -2.2450 47 1 9.2434 7.0430 -3.2730 48 1 12.1011 8.7610 -3.4245 49 1 5.3473 4.8570 -0.9292 50 1 3.7020 5.3782 -1.4067 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215495940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:11 Heat of formation + Delta-G solvation = -146.831077 kcal Electronic energy + Delta-G solvation = -31026.514286 eV Core-core repulsion = 26668.614470 eV Total energy + Delta-G solvation = -4357.899816 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.71859 -39.07559 -38.17939 -37.89169 -37.01432 -34.69295 -33.79949 -32.77350 -31.42710 -31.20196 -28.84699 -27.18468 -26.67819 -26.59980 -25.92332 -24.46106 -23.63519 -22.33525 -20.41412 -19.80545 -19.19030 -17.96290 -17.86587 -17.18010 -16.87400 -16.37173 -16.05829 -15.97774 -15.67929 -15.51975 -15.11213 -14.72918 -14.56206 -14.47907 -14.26388 -13.91609 -13.81655 -13.50970 -13.39150 -13.01123 -12.83424 -12.75896 -12.54780 -12.19054 -12.14616 -12.09423 -11.69569 -11.62880 -11.55226 -11.40824 -11.20108 -11.11827 -11.05000 -10.91796 -10.73342 -10.38931 -10.21397 -10.13245 -9.54589 -9.50778 -9.13345 -8.46023 -8.07381 -7.95789 -6.41433 -3.82100 2.23737 2.50389 3.18397 3.26987 3.33041 3.33445 3.43551 3.90430 4.02399 4.17357 4.24848 4.29887 4.46346 4.56152 4.65945 4.76770 4.83378 4.93504 4.95409 5.00834 5.06916 5.12683 5.13510 5.16354 5.25292 5.25537 5.27352 5.28895 5.34572 5.45091 5.47900 5.55462 5.59656 5.73570 5.84139 5.86618 5.96409 5.97993 6.11650 6.28618 6.62703 6.74108 7.16360 7.25883 7.55628 7.56639 7.89697 8.06355 8.61285 9.18160 9.54270 10.05647 10.76284 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015809 B = 0.002300 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.742220 B =12170.447768 C =13262.694969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.069 3.931 4 C 0.081 3.919 5 H 0.096 0.904 6 O -0.351 6.351 7 C 0.029 3.971 8 C 0.514 3.486 9 O -0.515 6.515 10 N -0.620 5.620 11 C 0.097 3.903 12 C -0.098 4.098 13 H 0.098 0.902 14 C -0.140 4.140 15 C 0.077 3.923 16 H 0.097 0.903 17 N -0.656 5.656 18 C 0.048 3.952 19 C 0.440 3.560 20 O -0.583 6.583 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 C 0.072 3.928 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.048 0.952 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.352 0.648 45 H 0.088 0.912 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.085 0.915 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.111 -9.894 2.255 27.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.008 4.008 4 C 0.019 3.981 5 H 0.114 0.886 6 O -0.268 6.268 7 C -0.068 4.068 8 C 0.301 3.699 9 O -0.389 6.389 10 N -0.356 5.356 11 C -0.026 4.026 12 C -0.118 4.118 13 H 0.116 0.884 14 C -0.197 4.197 15 C -0.035 4.035 16 H 0.115 0.885 17 N -0.288 5.288 18 C -0.084 4.084 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.200 5.200 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 C -0.052 4.052 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.172 0.828 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.355 -10.545 2.339 26.643 hybrid contribution 0.704 1.028 0.620 1.391 sum -23.651 -9.517 2.959 25.665 Atomic orbital electron populations 1.22784 0.80502 1.03091 1.00158 1.87917 1.20004 1.26632 1.95454 1.22521 0.90429 0.85968 1.01872 1.21883 0.93907 0.91725 0.90548 0.88607 1.87999 1.42411 1.66983 1.29402 1.22909 0.86382 0.94437 1.03027 1.20756 0.81365 0.86797 0.81020 1.90767 1.39445 1.70641 1.38032 1.49030 1.52692 1.18150 1.15765 1.22721 0.95124 1.00841 0.83927 1.22186 0.96362 0.98817 0.94458 0.88368 1.21783 0.99042 1.00885 0.98034 1.22691 0.89336 0.98768 0.92674 0.88517 1.60236 1.00078 1.14548 1.53913 1.21744 0.93640 0.92066 1.00984 1.19781 0.86552 0.86475 0.84613 1.90525 1.81614 1.19230 1.55388 1.41855 1.06199 1.08018 1.63888 1.19698 0.81116 0.94951 1.47069 0.87944 1.25269 1.00639 0.94734 0.97345 1.69612 1.35178 0.99044 1.50458 0.85850 0.81731 0.78278 0.78393 1.20386 1.20930 1.19428 1.23228 1.00326 0.83864 0.97780 0.93830 0.93896 0.89282 0.91728 0.91133 0.93607 0.93357 0.89010 0.90625 0.90141 0.91582 0.92363 0.92627 0.82792 0.89411 0.93782 0.77460 0.91876 0.89691 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.59 10.67 -40.08 -0.43 -4.02 16 3 C 0.07 0.62 5.42 37.16 0.20 0.82 16 4 C 0.08 0.91 2.10 -27.88 -0.06 0.85 16 5 H 0.10 0.93 7.37 -51.93 -0.38 0.55 16 6 O -0.35 -4.66 9.85 -59.70 -0.59 -5.25 16 7 C 0.03 0.32 10.81 101.05 1.09 1.41 16 8 C 0.51 6.88 7.25 -10.99 -0.08 6.80 16 9 O -0.51 -9.21 16.77 -14.31 -0.24 -9.45 16 10 N -0.62 -6.77 3.31 -169.31 -0.56 -7.33 16 11 C 0.10 0.73 4.88 -2.41 -0.01 0.72 16 12 C -0.10 -0.87 3.45 -89.22 -0.31 -1.17 16 13 H 0.10 1.04 7.95 -51.93 -0.41 0.63 16 14 C -0.14 -0.94 8.92 37.16 0.33 -0.61 16 15 C 0.08 0.85 3.03 -66.31 -0.20 0.65 16 16 H 0.10 0.95 7.39 -51.93 -0.38 0.56 16 17 N -0.66 -10.23 5.80 -106.51 -0.62 -10.85 16 18 C 0.05 0.83 6.02 -4.97 -0.03 0.80 16 19 C 0.44 10.46 7.82 -10.98 -0.09 10.38 16 20 O -0.58 -16.02 15.78 5.55 0.09 -15.93 16 21 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 22 C -0.30 -8.43 9.68 -14.93 -0.14 -8.57 16 23 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 26 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 29 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 30 C 0.07 0.81 6.49 -2.41 -0.02 0.80 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.46 5.94 -51.93 -0.31 0.16 16 36 H 0.05 0.42 8.08 -51.93 -0.42 0.00 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 0.42 7.72 -51.93 -0.40 0.02 16 40 H 0.08 0.51 6.78 -51.93 -0.35 0.16 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.05 0.31 8.10 -51.93 -0.42 -0.11 16 44 H 0.35 6.19 8.13 -39.29 -0.32 5.87 16 45 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 46 H 0.04 0.70 8.13 -51.93 -0.42 0.28 16 47 H 0.39 9.54 7.90 -40.82 -0.32 9.22 16 48 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 49 H 0.08 1.19 7.74 -51.93 -0.40 0.79 16 50 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 411.80 15.07 6.21 6.21 Total: -1.00 -35.60 411.80 -7.07 -42.67 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -8.28 Total: 11.45 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 1.71 Total: 14.65 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.51 Total: -56.60 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -1.17 Total: -34.66 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.60 -7.07 -42.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215495940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.160 kcal (2) G-P(sol) polarization free energy of solvation -35.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds