Wall clock time and date at job start Wed Apr 1 2020 02:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46995 * 2 1 4 4 C 1.46502 * 120.00058 * 270.00039 * 3 2 1 5 5 C 1.50703 * 109.47010 * 90.00297 * 4 3 2 6 6 H 1.07997 * 120.00226 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99822 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00102 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99829 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47352 * 59.99387 * 9 7 5 11 11 H 1.48499 * 109.46905 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46803 * 299.99188 * 9 7 5 13 13 C 1.34779 * 120.00216 * 90.00221 * 3 2 1 14 14 O 1.21274 * 119.99999 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99541 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.46924 * 179.97438 * 15 13 3 17 17 C 1.48555 * 111.00087 * 170.00133 * 16 15 13 18 18 C 1.54381 * 104.59623 * 159.04341 * 17 16 15 19 19 H 1.08991 * 110.32644 * 95.14315 * 18 17 16 20 20 N 1.46503 * 110.32212 * 217.25317 * 18 17 16 21 21 C 1.34777 * 119.99735 * 273.54526 * 20 18 17 22 22 O 1.21284 * 119.99792 * 359.97438 * 21 20 18 23 23 C 1.50698 * 120.00055 * 180.02562 * 21 20 18 24 24 O 1.42899 * 109.47259 * 179.97438 * 23 21 20 25 25 C 1.42899 * 114.00272 * 179.97438 * 24 23 21 26 26 C 1.54261 * 105.05637 * 336.14042 * 18 17 16 27 27 H 1.09004 * 110.31975 * 119.00371 * 26 18 17 28 28 O 1.42894 * 110.32687 * 241.10132 * 26 18 17 29 29 C 1.48563 * 111.00065 * 285.42049 * 16 15 13 30 30 H 1.09001 * 109.47002 * 299.99701 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00138 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46801 * 120.00145 * 2 1 3 34 34 H 1.09001 * 109.46998 * 239.99741 * 2 1 3 35 35 H 1.08996 * 109.47199 * 210.00336 * 4 3 2 36 36 H 1.09003 * 109.46945 * 330.00267 * 4 3 2 37 37 H 0.97000 * 120.00354 * 180.02562 * 8 7 5 38 38 H 1.09000 * 109.47193 * 300.00050 * 15 13 3 39 39 H 1.09004 * 109.47388 * 60.00115 * 15 13 3 40 40 H 1.09007 * 110.41228 * 277.82034 * 17 16 15 41 41 H 1.09002 * 110.41477 * 40.26172 * 17 16 15 42 42 H 0.96996 * 120.00243 * 93.54423 * 20 18 17 43 43 H 1.09007 * 109.46690 * 299.99397 * 23 21 20 44 44 H 1.08991 * 109.47488 * 59.99408 * 23 21 20 45 45 H 1.08999 * 109.47018 * 59.99390 * 25 24 23 46 46 H 1.08993 * 109.47363 * 179.97438 * 25 24 23 47 47 H 1.09004 * 109.46624 * 299.99630 * 25 24 23 48 48 H 0.96701 * 114.00653 * 180.02562 * 28 26 18 49 49 H 1.09008 * 110.40962 * 319.73640 * 29 16 15 50 50 H 1.09000 * 110.41049 * 82.17652 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0066 2.7823 -1.7037 6 1 0.1156 2.7247 -1.0961 7 6 0.9949 3.5048 -2.8779 8 7 2.0797 3.5745 -3.6180 9 14 -0.5616 4.3861 -3.4167 10 1 -0.9532 5.3765 -2.3819 11 1 -0.3142 5.0860 -4.7028 12 1 -1.6546 3.3965 -3.5936 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1671 15 6 1.9913 1.3063 2.4723 16 7 2.3103 2.2060 3.5889 17 6 1.8521 1.6340 4.8811 18 6 2.6942 2.3635 5.9498 19 1 2.1458 3.2183 6.3453 20 7 3.0502 1.4431 7.0325 21 6 2.2043 1.2584 8.0654 22 8 1.1486 1.8546 8.0987 23 6 2.5707 0.3121 9.1795 24 8 1.5212 0.2887 10.1491 25 6 1.7697 -0.5832 11.2537 26 6 3.9623 2.8342 5.2082 27 1 4.0380 3.9211 5.2401 28 8 5.1255 2.2395 5.7872 29 6 3.7797 2.3497 3.7539 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 3.0644 2.7984 -1.1384 36 1 2.5506 1.3451 -2.0284 37 1 2.0716 4.0832 -4.4439 38 1 0.9433 1.0125 2.5298 39 1 2.6212 0.4185 2.5302 40 1 0.7912 1.8348 5.0309 41 1 2.0451 0.5617 4.9119 42 1 3.8946 0.9666 7.0061 43 1 2.7129 -0.6894 8.7734 44 1 3.4939 0.6471 9.6520 45 1 2.6767 -0.2673 11.7690 46 1 0.9274 -0.5437 11.9443 47 1 1.8946 -1.6032 10.8904 48 1 5.9538 2.4997 5.3614 49 1 4.2743 1.3893 3.6082 50 1 4.1702 3.0893 3.0548 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219089709.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:25 Heat of formation + Delta-G solvation = -170.955994 kcal Electronic energy + Delta-G solvation = -30880.554569 eV Core-core repulsion = 26521.608618 eV Total energy + Delta-G solvation = -4358.945951 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.47525 -40.69688 -39.67905 -38.29235 -37.09611 -36.68625 -35.34629 -34.83119 -32.08173 -31.43793 -30.14030 -29.33267 -28.78184 -27.28982 -26.41704 -24.60054 -24.07562 -22.65213 -22.12713 -21.52026 -19.86620 -18.82724 -18.67408 -18.30829 -17.99326 -17.61199 -17.22991 -17.13616 -16.68777 -16.46161 -16.36545 -16.12715 -15.71819 -15.48693 -15.28852 -14.89136 -14.62981 -14.42620 -14.35081 -14.12170 -14.00357 -13.83374 -13.63582 -13.33503 -13.24507 -13.07149 -13.00756 -12.77265 -12.62584 -12.55736 -12.47206 -12.34206 -12.12001 -12.05985 -11.75661 -11.62173 -11.07003 -10.92385 -10.74378 -10.61457 -10.57402 -10.17321 -9.51770 -9.39278 -8.20039 -6.32512 1.35586 1.39793 1.46488 1.54268 1.71903 1.87198 2.25714 2.41065 2.82164 3.09432 3.18033 3.22442 3.43472 3.52971 3.78882 3.84195 4.02101 4.07887 4.16620 4.21714 4.21829 4.29654 4.34932 4.41294 4.50513 4.52835 4.58051 4.60146 4.64143 4.82001 4.85913 4.89794 4.92071 4.94693 5.02835 5.07608 5.24990 5.30204 5.50553 5.62440 5.72670 5.74675 5.91332 6.06880 6.10662 6.56619 6.74403 6.75903 6.84959 7.24732 7.32367 7.55788 8.86616 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.002146 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.254998 B =13043.472003 C =13434.220106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.606 5.606 4 C 0.263 3.737 5 C -0.532 4.532 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.961 3.039 10 H -0.281 1.281 11 H -0.279 1.279 12 H -0.262 1.262 13 C 0.499 3.501 14 O -0.578 6.578 15 C 0.043 3.957 16 N -0.511 5.511 17 C 0.030 3.970 18 C 0.154 3.846 19 H 0.086 0.914 20 N -0.693 5.693 21 C 0.506 3.494 22 O -0.575 6.575 23 C 0.047 3.953 24 O -0.409 6.409 25 C 0.025 3.975 26 C 0.113 3.887 27 H 0.079 0.921 28 O -0.561 6.561 29 C 0.008 3.992 30 H 0.049 0.951 31 H 0.038 0.962 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.077 0.923 35 H -0.003 1.003 36 H 0.022 0.978 37 H 0.265 0.735 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.423 0.577 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.060 0.940 48 H 0.405 0.595 49 H 0.068 0.932 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.681 -14.724 25.786 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.017 4.017 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.571 4.571 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.785 3.215 10 H -0.207 1.207 11 H -0.204 1.204 12 H -0.186 1.186 13 C 0.287 3.713 14 O -0.457 6.457 15 C -0.088 4.088 16 N -0.237 5.237 17 C -0.098 4.098 18 C 0.047 3.953 19 H 0.105 0.895 20 N -0.349 5.349 21 C 0.293 3.707 22 O -0.454 6.454 23 C -0.032 4.032 24 O -0.328 6.328 25 C -0.071 4.071 26 C 0.053 3.947 27 H 0.097 0.903 28 O -0.370 6.370 29 C -0.121 4.121 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.015 0.985 36 H 0.040 0.960 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.263 0.737 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.078 0.922 46 H 0.111 0.889 47 H 0.079 0.921 48 H 0.257 0.743 49 H 0.086 0.914 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.382 -13.312 25.884 29.600 hybrid contribution 0.508 0.150 -1.272 1.378 sum 5.890 -13.162 24.613 28.526 Atomic orbital electron populations 1.22169 0.95753 1.02782 1.01583 1.21729 0.95041 0.81146 1.03824 1.48292 1.64345 1.15010 1.06189 1.18705 0.95294 0.91494 0.80314 1.21665 0.97961 1.31302 1.06124 0.92934 1.25795 0.99626 0.97076 0.96679 1.70032 1.29423 1.42558 1.14820 0.85575 0.79769 0.78823 0.77289 1.20663 1.20400 1.18612 1.21040 0.77607 0.86577 0.86079 1.90626 1.47557 1.19752 1.87770 1.22165 1.04404 0.94205 0.88055 1.64972 1.12442 1.44284 1.01984 1.23516 1.00377 0.98242 0.87694 1.21542 0.94345 0.92817 0.86588 0.89547 1.45512 1.22902 1.45773 1.20671 1.21036 0.83621 0.82625 0.83390 1.90734 1.25850 1.49883 1.78896 1.22352 0.92070 0.99745 0.89054 1.87969 1.43096 1.67074 1.34644 1.23030 1.02957 0.93257 0.87860 1.22477 0.85384 0.97320 0.89556 0.90274 1.86182 1.16999 1.72898 1.60891 1.23877 0.88768 1.01744 0.97689 0.93149 0.94300 0.88999 0.87809 0.90463 0.98488 0.95994 0.92571 0.86721 0.88834 0.90240 0.91233 0.73741 0.87163 0.87329 0.92178 0.88941 0.92122 0.74266 0.91404 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.66 10.24 71.98 0.74 -3.92 16 2 C 0.10 3.06 5.98 86.38 0.52 3.57 16 3 N -0.61 -25.10 2.46 -826.14 -2.03 -27.13 16 4 C 0.26 14.10 5.20 85.63 0.45 14.55 16 5 C -0.53 -30.68 8.92 25.60 0.23 -30.45 16 6 H 0.05 3.02 7.42 -2.91 -0.02 3.00 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 9 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 10 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 13 C 0.50 20.37 7.52 87.66 0.66 21.03 16 14 O -0.58 -29.64 14.80 -3.01 -0.04 -29.68 16 15 C 0.04 1.19 3.87 85.56 0.33 1.52 16 16 N -0.51 -14.27 4.98 -886.02 -4.41 -18.68 16 17 C 0.03 0.69 6.17 86.45 0.53 1.22 16 18 C 0.15 3.22 3.36 45.89 0.15 3.38 16 19 H 0.09 2.21 7.64 -2.39 -0.02 2.20 16 20 N -0.69 -11.35 4.90 -438.29 -2.15 -13.50 16 21 C 0.51 10.50 7.90 87.66 0.69 11.19 16 22 O -0.58 -18.32 16.20 16.00 0.26 -18.06 16 23 C 0.05 0.60 6.42 71.24 0.46 1.05 16 24 O -0.41 -7.75 10.24 -129.94 -1.33 -9.08 16 25 C 0.02 0.23 11.01 113.37 1.25 1.48 16 26 C 0.11 2.08 4.42 31.49 0.14 2.21 16 27 H 0.08 1.51 8.14 -2.38 -0.02 1.50 16 28 O -0.56 -6.68 11.49 -148.98 -1.71 -8.40 16 29 C 0.01 0.18 5.66 86.45 0.49 0.67 16 30 H 0.05 1.40 7.22 -2.39 -0.02 1.38 16 31 H 0.04 1.39 7.26 -2.39 -0.02 1.37 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.10 2.11 6.44 -2.39 -0.02 2.09 16 34 H 0.08 2.22 7.89 -2.39 -0.02 2.20 16 35 H 0.00 -0.19 7.42 -2.39 -0.02 -0.20 16 36 H 0.02 1.19 7.89 -2.39 -0.02 1.18 16 37 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 38 H 0.11 2.87 7.13 -2.39 -0.02 2.86 16 39 H 0.09 1.95 7.02 -2.39 -0.02 1.93 16 40 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.07 1.29 7.91 -2.39 -0.02 1.27 16 42 H 0.42 4.72 7.17 -92.71 -0.67 4.06 16 43 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 46 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 0.34 8.14 -2.38 -0.02 0.33 16 48 H 0.41 2.07 9.12 -74.06 -0.68 1.40 16 49 H 0.07 1.37 7.69 -2.38 -0.02 1.35 16 50 H 0.07 2.17 7.24 -2.39 -0.02 2.15 16 Total: -1.00 -87.18 407.25 -2.39 -89.56 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -0.38 Total: 14.93 kcal Atomic # 6 Polarization: 21.27 SS G_CDS: 7.09 Total: 28.36 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -8.30 Total: -115.43 kcal Atomic # 8 Polarization: -62.40 SS G_CDS: -2.83 Total: -65.22 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -87.18 -2.39 -89.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219089709.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.392 kcal (2) G-P(sol) polarization free energy of solvation -87.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds