Wall clock time and date at job start Wed Apr 1 2020 01:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46980 * 2 1 4 4 C 1.42899 * 113.99998 * 178.92545 * 3 2 1 5 5 H 1.09009 * 109.47082 * 19.44593 * 4 3 2 6 6 C 1.53002 * 109.47388 * 259.44512 * 4 3 2 7 7 C 1.53001 * 109.46881 * 65.33665 * 6 4 3 8 8 C 1.50695 * 109.47303 * 139.44363 * 4 3 2 9 9 O 1.21285 * 120.00009 * 5.00446 * 8 4 3 10 10 N 1.34777 * 120.00367 * 185.00329 * 8 4 3 11 11 C 1.46506 * 119.99944 * 180.02562 * 10 8 4 12 12 H 1.08994 * 110.27450 * 35.63336 * 11 10 8 13 13 C 1.53985 * 110.30587 * 273.54223 * 11 10 8 14 14 N 1.47904 * 107.06245 * 239.85982 * 13 11 10 15 15 C 1.46899 * 111.00192 * 145.84463 * 14 13 11 16 16 C 1.50702 * 109.47082 * 190.00253 * 15 14 13 17 17 O 1.21300 * 120.00023 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00044 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99822 * 179.97438 * 18 16 15 20 20 H 1.08002 * 120.00287 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99928 * 179.97438 * 19 18 16 22 22 N 1.31415 * 119.99657 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00320 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46872 * 60.00571 * 23 21 19 25 25 H 1.48494 * 109.47395 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47023 * 300.00852 * 23 21 19 27 27 C 1.48542 * 105.81624 * 25.33134 * 14 13 11 28 28 C 1.54595 * 110.30493 * 157.83068 * 11 10 8 29 29 H 1.09001 * 110.71984 * 215.31666 * 28 11 10 30 30 O 1.42901 * 110.72620 * 338.59496 * 28 11 10 31 31 H 1.09000 * 109.47294 * 59.99856 * 1 2 3 32 32 H 1.08999 * 109.47223 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47212 * 300.00303 * 1 2 3 34 34 H 1.08994 * 109.47164 * 239.99916 * 2 1 3 35 35 H 1.09000 * 109.47086 * 119.99632 * 2 1 3 36 36 H 1.09003 * 109.47258 * 185.33070 * 6 4 3 37 37 H 1.09000 * 109.47019 * 305.33910 * 6 4 3 38 38 H 1.09002 * 109.47391 * 297.83804 * 7 6 4 39 39 H 1.09003 * 109.47110 * 57.83985 * 7 6 4 40 40 H 1.09003 * 109.46994 * 177.83428 * 7 6 4 41 41 H 0.97001 * 119.99894 * 359.97438 * 10 8 4 42 42 H 1.09004 * 109.92304 * 359.21578 * 13 11 10 43 43 H 1.09005 * 109.91823 * 120.50717 * 13 11 10 44 44 H 1.08998 * 109.47509 * 310.00233 * 15 14 13 45 45 H 1.08994 * 109.46908 * 70.00848 * 15 14 13 46 46 H 0.96998 * 120.00208 * 359.97438 * 18 16 15 47 47 H 0.97009 * 119.99673 * 179.97438 * 22 21 19 48 48 H 1.09006 * 110.66158 * 79.22800 * 27 14 13 49 49 H 1.08992 * 110.66657 * 202.18949 * 27 14 13 50 50 H 0.96696 * 114.00035 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4306 1.4602 0.0245 5 1 3.8753 0.5207 -0.3040 6 6 3.8931 1.7728 1.4490 7 6 3.5726 0.5868 2.3610 8 6 3.8624 2.5702 -0.8988 9 8 3.0301 3.2615 -1.4468 10 7 5.1736 2.7948 -1.1155 11 6 5.5933 3.8743 -2.0126 12 1 4.9169 4.7242 -1.9232 13 6 5.6336 3.3740 -3.4684 14 7 7.0226 3.5439 -3.9473 15 6 7.3932 2.4705 -4.8792 16 6 8.8738 2.5322 -5.1534 17 8 9.5535 3.3862 -4.6242 18 7 9.4427 1.6386 -5.9866 19 6 10.7895 1.6951 -6.2364 20 1 11.3947 2.4555 -5.7652 21 6 11.3761 0.7735 -7.0950 22 7 10.6397 -0.1520 -7.6680 23 14 13.2113 0.8499 -7.4349 24 1 13.9578 0.6803 -6.1625 25 1 13.5858 -0.2348 -8.3774 26 1 13.5491 2.1655 -8.0355 27 6 7.8766 3.5125 -2.7323 28 6 7.0436 4.3040 -1.6931 29 1 7.1681 5.3775 -1.8358 30 8 7.4020 3.9246 -0.3628 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3634 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 4.9682 1.9524 1.4509 37 1 3.3757 2.6607 1.8124 38 1 2.4941 0.4313 2.3894 39 1 4.0590 -0.3095 1.9759 40 1 3.9365 0.7937 3.3674 41 1 5.8393 2.2422 -0.6769 42 1 5.3536 2.3213 -3.5072 43 1 4.9541 3.9646 -4.0829 44 1 7.1453 1.5049 -4.4383 45 1 6.8453 2.5949 -5.8131 46 1 8.8992 0.9555 -6.4095 47 1 11.0492 -0.7952 -8.2677 48 1 8.0333 2.4866 -2.3988 49 1 8.8307 4.0048 -2.9199 50 1 8.3030 4.1711 -0.1128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219302024.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:25 Heat of formation + Delta-G solvation = -182.964842 kcal Electronic energy + Delta-G solvation = -30988.857359 eV Core-core repulsion = 26629.390665 eV Total energy + Delta-G solvation = -4359.466694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.58327 -40.62329 -39.57774 -38.62526 -36.89421 -35.96673 -35.36167 -34.40261 -33.32805 -31.97768 -31.56854 -29.37461 -28.46257 -27.49601 -25.92579 -23.75398 -23.24838 -22.67839 -21.95550 -21.39303 -21.08017 -19.88519 -18.71933 -18.48429 -17.98680 -17.76963 -17.06008 -16.83391 -16.61795 -16.48646 -16.30241 -15.84048 -15.71279 -15.56785 -15.08042 -15.00633 -14.84692 -14.51918 -14.17661 -13.98699 -13.76452 -13.48477 -13.46049 -13.29300 -13.24463 -13.16619 -12.97421 -12.85749 -12.76861 -12.53954 -12.43503 -12.36492 -12.14319 -12.13056 -11.92486 -11.72490 -11.48003 -11.06523 -10.97806 -10.38629 -10.25916 -10.18686 -10.02322 -9.40616 -8.47542 -5.96361 1.39254 1.42056 1.49677 1.52678 1.77434 2.01076 2.27265 2.62681 2.91527 3.09678 3.19182 3.31091 3.54031 3.63178 3.70983 3.81306 3.90915 4.09097 4.16843 4.19075 4.25140 4.30042 4.30425 4.34808 4.44692 4.47301 4.49645 4.53516 4.65914 4.77591 4.81065 4.85481 4.86226 5.01687 5.07149 5.13086 5.14001 5.26921 5.33819 5.35676 5.40600 5.74417 5.83305 6.02990 6.09847 6.50973 6.58017 6.76850 7.10914 7.17659 7.53066 8.07680 8.69571 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.002208 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.056000 B =12678.284103 C =13290.924134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.042 3.958 3 O -0.384 6.384 4 C 0.077 3.923 5 H 0.109 0.891 6 C -0.131 4.131 7 C -0.151 4.151 8 C 0.506 3.494 9 O -0.569 6.569 10 N -0.696 5.696 11 C 0.148 3.852 12 H 0.095 0.905 13 C 0.029 3.971 14 N -0.503 5.503 15 C 0.048 3.952 16 C 0.441 3.559 17 O -0.610 6.610 18 N -0.571 5.571 19 C -0.331 4.331 20 H 0.083 0.917 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.272 1.272 27 C 0.012 3.988 28 C 0.109 3.891 29 H 0.092 0.908 30 O -0.561 6.561 31 H 0.049 0.951 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.415 0.585 42 H 0.054 0.946 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.107 0.893 46 H 0.395 0.605 47 H 0.278 0.722 48 H 0.039 0.961 49 H 0.093 0.907 50 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.483 -1.916 18.663 23.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.034 4.034 3 O -0.302 6.302 4 C 0.016 3.984 5 H 0.126 0.874 6 C -0.169 4.169 7 C -0.208 4.208 8 C 0.293 3.707 9 O -0.447 6.447 10 N -0.350 5.350 11 C 0.042 3.958 12 H 0.114 0.886 13 C -0.100 4.100 14 N -0.229 5.229 15 C -0.084 4.084 16 C 0.229 3.771 17 O -0.497 6.497 18 N -0.208 5.208 19 C -0.461 4.461 20 H 0.101 0.899 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.116 4.116 28 C 0.048 3.952 29 H 0.109 0.891 30 O -0.369 6.369 31 H 0.068 0.932 32 H 0.112 0.888 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.253 0.747 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.085 0.915 45 H 0.125 0.875 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.057 0.943 49 H 0.111 0.889 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -15.249 -0.613 18.210 23.759 hybrid contribution 1.487 -1.287 -0.417 2.010 sum -13.762 -1.900 17.793 22.574 Atomic orbital electron populations 1.21759 0.93024 1.03423 1.02512 1.22960 0.96476 0.82520 1.01417 1.88014 1.19001 1.28309 1.94920 1.22052 0.83650 0.97277 0.95405 0.87372 1.21919 1.02279 1.00474 0.92233 1.21840 1.02083 0.97196 0.99704 1.21186 0.82323 0.85551 0.81631 1.90693 1.52752 1.49874 1.51378 1.45696 1.06740 1.35063 1.47458 1.21725 0.95110 0.90657 0.88336 0.88648 1.23417 0.90598 1.00907 0.95066 1.64562 1.02410 1.43046 1.12833 1.22004 0.92820 0.94172 0.99359 1.20541 0.90343 0.83463 0.82788 1.90419 1.65569 1.39193 1.54484 1.41916 1.08777 1.29024 1.41080 1.19637 0.84685 1.15076 1.26672 0.89931 1.26064 1.04646 0.94886 0.95775 1.69676 1.38162 1.17582 1.30770 0.84979 0.76898 0.78080 0.78346 1.19471 1.19727 1.19746 1.24026 0.98703 0.99587 0.89245 1.22818 0.91630 0.98666 0.82037 0.89052 1.86285 1.38110 1.84078 1.28404 0.93199 0.88775 0.91974 0.93005 0.90674 0.89066 0.92002 0.92340 0.91311 0.91096 0.74716 0.92753 0.89035 0.91470 0.87457 0.77111 0.91306 0.94291 0.88883 0.74654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.28 71.98 0.74 -1.28 16 2 C 0.04 0.63 6.03 71.98 0.43 1.07 16 3 O -0.38 -8.57 9.30 -129.99 -1.21 -9.78 16 4 C 0.08 1.44 2.68 29.85 0.08 1.52 16 5 H 0.11 1.49 7.70 -2.38 -0.02 1.47 16 6 C -0.13 -1.90 5.61 30.60 0.17 -1.73 16 7 C -0.15 -1.57 8.92 71.98 0.64 -0.93 16 8 C 0.51 12.66 7.17 87.66 0.63 13.29 16 9 O -0.57 -19.38 16.20 15.94 0.26 -19.12 16 10 N -0.70 -14.98 4.56 -438.38 -2.00 -16.98 16 11 C 0.15 3.57 3.26 45.87 0.15 3.72 16 12 H 0.10 2.48 7.64 -2.39 -0.02 2.47 16 13 C 0.03 0.77 6.49 86.44 0.56 1.33 16 14 N -0.50 -16.00 5.26 -887.57 -4.67 -20.67 16 15 C 0.05 1.65 5.52 85.56 0.47 2.13 16 16 C 0.44 20.24 7.49 87.66 0.66 20.89 16 17 O -0.61 -31.46 13.09 -3.09 -0.04 -31.50 16 18 N -0.57 -28.59 5.29 -306.97 -1.62 -30.21 16 19 C -0.33 -18.27 9.68 84.04 0.81 -17.46 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 22 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 23 Si 0.99 41.94 29.55 68.60 2.03 43.97 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 26 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 27 C 0.01 0.37 5.03 86.65 0.44 0.81 16 28 C 0.11 2.47 4.35 31.80 0.14 2.61 16 29 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 30 O -0.56 -10.17 12.05 -148.98 -1.80 -11.96 16 31 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.73 8.13 -2.39 -0.02 0.72 16 35 H 0.08 0.80 5.87 -2.39 -0.01 0.79 16 36 H 0.09 1.12 7.76 -2.39 -0.02 1.11 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.06 0.66 6.35 -2.39 -0.02 0.64 16 39 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.42 7.50 7.46 -92.71 -0.69 6.81 16 42 H 0.05 1.43 7.35 -2.38 -0.02 1.41 16 43 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 44 H 0.07 2.09 7.81 -2.39 -0.02 2.07 16 45 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 46 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 47 H 0.28 13.89 8.31 -92.70 -0.77 13.12 16 48 H 0.04 1.21 8.02 -2.38 -0.02 1.19 16 49 H 0.09 3.44 5.96 -2.39 -0.01 3.42 16 50 H 0.40 4.62 9.12 -74.06 -0.68 3.94 16 Total: -1.00 -72.56 403.50 -3.49 -76.05 By element: Atomic # 1 Polarization: 44.35 SS G_CDS: -1.12 Total: 43.24 kcal Atomic # 6 Polarization: 19.33 SS G_CDS: 6.39 Total: 25.72 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -8.01 Total: -116.62 kcal Atomic # 8 Polarization: -69.58 SS G_CDS: -2.79 Total: -72.36 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -72.56 -3.49 -76.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219302024.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.912 kcal (2) G-P(sol) polarization free energy of solvation -72.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds