Wall clock time and date at job start Wed Apr 1 2020 01:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.46847 * 2 1 4 4 C 1.42899 * 113.99516 * 179.15067 * 3 2 1 5 5 H 1.09001 * 109.47666 * 30.11809 * 4 3 2 6 6 C 1.53004 * 109.47004 * 150.11670 * 4 3 2 7 7 C 1.52999 * 109.47234 * 294.73666 * 6 4 3 8 8 C 1.50702 * 109.47147 * 270.11486 * 4 3 2 9 9 O 1.21287 * 119.99720 * 0.02562 * 8 4 3 10 10 N 1.34771 * 120.00403 * 180.02562 * 8 4 3 11 11 C 1.46502 * 120.00388 * 180.02562 * 10 8 4 12 12 H 1.08996 * 110.78179 * 36.79288 * 11 10 8 13 13 C 1.54941 * 110.72248 * 273.54429 * 11 10 8 14 14 N 1.48531 * 103.37371 * 204.30758 * 13 11 10 15 15 C 1.46902 * 110.99639 * 159.63726 * 14 13 11 16 16 C 1.50704 * 109.47110 * 169.99862 * 15 14 13 17 17 O 1.21297 * 119.99667 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00017 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99970 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99818 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00156 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99855 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00090 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46884 * 60.00254 * 23 21 19 25 25 H 1.48495 * 109.46864 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47025 * 300.00182 * 23 21 19 27 27 C 1.47896 * 105.82104 * 39.12828 * 14 13 11 28 28 C 1.53991 * 107.06112 * 334.66437 * 27 14 13 29 29 H 1.08997 * 110.31706 * 242.21668 * 28 27 14 30 30 O 1.42898 * 110.31148 * 120.13934 * 28 27 14 31 31 H 1.08997 * 109.47099 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46733 * 299.99452 * 1 2 3 33 33 H 1.08991 * 109.47634 * 59.99480 * 1 2 3 34 34 H 1.09002 * 109.46733 * 240.00548 * 2 1 3 35 35 H 1.08994 * 109.47390 * 119.99786 * 2 1 3 36 36 H 1.09009 * 109.46776 * 54.73846 * 6 4 3 37 37 H 1.09001 * 109.46823 * 174.73207 * 6 4 3 38 38 H 1.09000 * 109.46722 * 65.20736 * 7 6 4 39 39 H 1.09001 * 109.46729 * 185.20620 * 7 6 4 40 40 H 1.08992 * 109.46947 * 305.20869 * 7 6 4 41 41 H 0.97007 * 120.00064 * 359.97438 * 10 8 4 42 42 H 1.09004 * 110.66181 * 85.79309 * 13 11 10 43 43 H 1.08994 * 110.66665 * 322.82733 * 13 11 10 44 44 H 1.09002 * 109.47227 * 290.00092 * 15 14 13 45 45 H 1.09001 * 109.46981 * 50.00181 * 15 14 13 46 46 H 0.97002 * 120.00112 * 0.02562 * 18 16 15 47 47 H 0.96997 * 120.00145 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.92497 * 94.01979 * 27 14 13 49 49 H 1.09008 * 109.92002 * 215.11961 * 27 14 13 50 50 H 0.96699 * 113.99502 * 61.46049 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4307 1.4602 0.0194 5 1 3.8703 0.6002 -0.4860 6 6 3.8504 2.7437 -0.6999 7 6 3.4781 2.6437 -2.1806 8 6 3.9118 1.5040 1.4468 9 8 3.1134 1.4440 2.3579 10 7 5.2291 1.6099 1.7111 11 6 5.6968 1.6519 3.0988 12 1 5.0981 0.9941 3.7288 13 6 5.6724 3.1028 3.6419 14 7 6.6821 3.0791 4.7310 15 6 7.1508 4.4357 5.0438 16 6 7.9787 4.4033 6.3027 17 8 8.1608 3.3532 6.8819 18 7 8.5168 5.5410 6.7849 19 6 9.2704 5.5115 7.9297 20 1 9.4325 4.5765 8.4455 21 6 9.8247 6.6845 8.4272 22 7 9.6270 7.8222 7.7999 23 14 10.8509 6.6443 9.9875 24 1 12.0205 5.7513 9.7878 25 1 11.3242 8.0157 10.3041 26 1 10.0243 6.1337 11.1106 27 6 7.7914 2.2366 4.2341 28 6 7.1960 1.2769 3.1873 29 1 7.3117 0.2430 3.5125 30 8 7.8276 1.4711 1.9202 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.3372 3.5952 -0.2528 37 1 4.9279 2.8779 -0.6044 38 1 2.3935 2.6025 -2.2804 39 1 3.8589 3.5167 -2.7106 40 1 3.9166 1.7408 -2.6052 41 1 5.8677 1.6575 0.9824 42 1 4.6866 3.3493 4.0365 43 1 5.9618 3.8096 2.8642 44 1 7.7578 4.8096 4.2193 45 1 6.2928 5.0919 5.1901 46 1 8.3709 6.3808 6.3218 47 1 10.0143 8.6410 8.1469 48 1 8.5550 2.8624 3.7721 49 1 8.2248 1.6694 5.0579 50 1 8.7782 1.2939 1.9235 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219302025.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:29 Heat of formation + Delta-G solvation = -160.814025 kcal Electronic energy + Delta-G solvation = -30713.054858 eV Core-core repulsion = 26354.548696 eV Total energy + Delta-G solvation = -4358.506162 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.55427 -39.40571 -38.05513 -37.52470 -35.75609 -34.70904 -34.02056 -33.71728 -31.27935 -31.13859 -30.37195 -28.42054 -27.33244 -26.13430 -24.21697 -23.19550 -22.45139 -21.52002 -21.08823 -20.40594 -19.18897 -18.07943 -17.89887 -17.60287 -17.23964 -16.16135 -16.02492 -15.55378 -15.34211 -15.14236 -14.81285 -14.66528 -14.51996 -14.35220 -14.27127 -13.98926 -13.72169 -13.32101 -13.06582 -12.88432 -12.80250 -12.71530 -12.41725 -12.12976 -12.06758 -12.01802 -11.67434 -11.55555 -11.52007 -11.44881 -11.32151 -11.12244 -11.09962 -10.87632 -10.62146 -10.44395 -10.25558 -10.20531 -9.48826 -9.44921 -9.18314 -8.53731 -8.01944 -7.94854 -6.41269 -3.82198 2.40286 2.76426 3.19947 3.25678 3.29856 3.35097 3.85175 3.90173 4.06933 4.25219 4.41246 4.48983 4.50738 4.56539 4.61232 4.77300 4.86277 4.93838 4.97045 5.09126 5.12088 5.14595 5.24010 5.27902 5.32760 5.38258 5.39551 5.57973 5.63162 5.65082 5.71031 5.75177 5.84223 5.85297 5.89759 5.90436 5.99435 6.17480 6.24004 6.29140 6.76113 7.03402 7.11235 7.33175 7.41752 7.55089 8.05964 8.08789 8.62091 9.18265 9.54652 10.06564 10.76446 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022046 B = 0.001935 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.779289 B =14468.462558 C =14495.264611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.354 6.354 4 C 0.078 3.922 5 H 0.086 0.914 6 C -0.118 4.118 7 C -0.148 4.148 8 C 0.486 3.514 9 O -0.524 6.524 10 N -0.710 5.710 11 C 0.153 3.847 12 H 0.110 0.890 13 C 0.025 3.975 14 N -0.484 5.484 15 C 0.038 3.962 16 C 0.445 3.555 17 O -0.578 6.578 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 C 0.014 3.986 28 C 0.087 3.913 29 H 0.075 0.925 30 O -0.570 6.570 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.409 0.591 42 H 0.089 0.911 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.090 0.910 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.054 0.946 49 H 0.100 0.900 50 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.860 -12.754 -22.327 27.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.272 6.272 4 C 0.016 3.984 5 H 0.103 0.897 6 C -0.155 4.155 7 C -0.206 4.206 8 C 0.271 3.729 9 O -0.399 6.399 10 N -0.365 5.365 11 C 0.047 3.953 12 H 0.128 0.872 13 C -0.104 4.104 14 N -0.209 5.209 15 C -0.094 4.094 16 C 0.230 3.770 17 O -0.462 6.462 18 N -0.202 5.202 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.115 4.115 28 C 0.027 3.973 29 H 0.093 0.907 30 O -0.377 6.377 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.246 0.754 42 H 0.107 0.893 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.108 0.892 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.118 0.882 50 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -11.211 -13.208 -20.918 27.161 hybrid contribution 1.934 0.731 -0.235 2.081 sum -9.277 -12.478 -21.153 26.253 Atomic orbital electron populations 1.21706 0.93435 1.02223 1.03247 1.22574 0.96010 0.83534 0.99984 1.88000 1.18126 1.26753 1.94273 1.22049 0.83744 1.00582 0.91991 0.89672 1.21614 1.01548 0.96084 0.96291 1.21716 1.02472 1.01784 0.94578 1.21482 0.82506 0.76528 0.92344 1.90737 1.54056 1.48211 1.46852 1.45815 1.07342 1.74646 1.08717 1.21918 0.92499 0.97624 0.83212 0.87213 1.23649 0.97891 0.95799 0.93104 1.64454 1.10116 1.10756 1.35577 1.22091 0.99511 0.90268 0.97495 1.19689 0.84828 0.85067 0.87427 1.90505 1.63725 1.30548 1.61388 1.41850 1.45567 1.08150 1.24608 1.19641 1.26009 0.95804 1.01394 0.87986 1.25262 0.98437 0.94719 0.99561 1.69603 1.45516 0.98814 1.40422 0.85915 0.79832 0.77088 0.81357 1.19970 1.20989 1.19876 1.23655 0.93916 0.96232 0.97649 1.23038 0.91892 0.98810 0.83527 0.90685 1.86232 1.26963 1.92606 1.31868 0.91131 0.91510 0.91960 0.93492 0.92970 0.90229 0.90014 0.91811 0.92145 0.92772 0.75385 0.89270 0.93296 0.93090 0.89157 0.77510 0.91832 0.92794 0.88173 0.76437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.73 16 2 C 0.06 0.48 6.42 37.16 0.24 0.72 16 3 O -0.35 -3.83 9.17 -55.14 -0.51 -4.33 16 4 C 0.08 0.71 2.52 -27.88 -0.07 0.64 16 5 H 0.09 0.58 7.80 -51.93 -0.40 0.17 16 6 C -0.12 -0.88 5.59 -26.73 -0.15 -1.03 16 7 C -0.15 -0.90 9.76 37.16 0.36 -0.54 16 8 C 0.49 5.81 7.18 -10.99 -0.08 5.73 16 9 O -0.52 -8.47 16.20 -14.36 -0.23 -8.71 16 10 N -0.71 -7.43 5.00 -51.91 -0.26 -7.69 16 11 C 0.15 1.91 3.30 -65.97 -0.22 1.69 16 12 H 0.11 1.53 7.70 -51.93 -0.40 1.12 16 13 C 0.02 0.35 6.19 -1.90 -0.01 0.34 16 14 N -0.48 -8.17 4.91 -231.89 -1.14 -9.31 16 15 C 0.04 0.69 5.27 -4.97 -0.03 0.67 16 16 C 0.44 10.54 7.61 -10.98 -0.08 10.46 16 17 O -0.58 -15.56 14.86 5.54 0.08 -15.48 16 18 N -0.56 -14.38 5.29 -10.96 -0.06 -14.43 16 19 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 23 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.01 0.21 5.68 -2.76 -0.02 0.19 16 28 C 0.09 0.96 4.31 -25.27 -0.11 0.85 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 O -0.57 -5.00 11.61 -35.23 -0.41 -5.41 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.31 8.10 -51.93 -0.42 -0.11 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.70 8.14 -51.92 -0.42 0.28 16 37 H 0.08 0.50 7.42 -51.93 -0.39 0.12 16 38 H 0.06 0.44 7.97 -51.93 -0.41 0.03 16 39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.41 3.55 6.53 -40.82 -0.27 3.28 16 42 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 43 H 0.05 0.66 8.02 -51.93 -0.42 0.24 16 44 H 0.05 0.84 7.73 -51.93 -0.40 0.44 16 45 H 0.09 1.53 8.08 -51.93 -0.42 1.11 16 46 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 48 H 0.05 0.78 7.34 -51.93 -0.38 0.40 16 49 H 0.10 1.68 7.52 -51.92 -0.39 1.29 16 50 H 0.39 2.09 9.11 45.56 0.41 2.51 16 LS Contribution 410.23 15.07 6.18 6.18 Total: -1.00 -34.57 410.23 -8.18 -42.75 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -7.52 Total: 13.25 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: -0.02 Total: 10.99 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.73 Total: -55.32 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -1.06 Total: -33.93 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.57 -8.18 -42.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219302025.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.059 kcal (2) G-P(sol) polarization free energy of solvation -34.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds