Wall clock time and date at job start Wed Apr 1 2020 01:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.46847 * 2 1 4 4 C 1.42899 * 113.99516 * 179.15067 * 3 2 1 5 5 H 1.09001 * 109.47666 * 30.11809 * 4 3 2 6 6 C 1.53004 * 109.47004 * 150.11670 * 4 3 2 7 7 C 1.52999 * 109.47234 * 294.73666 * 6 4 3 8 8 C 1.50702 * 109.47147 * 270.11486 * 4 3 2 9 9 O 1.21287 * 119.99720 * 0.02562 * 8 4 3 10 10 N 1.34771 * 120.00403 * 180.02562 * 8 4 3 11 11 C 1.46502 * 120.00388 * 180.02562 * 10 8 4 12 12 H 1.08996 * 110.78179 * 36.79288 * 11 10 8 13 13 C 1.54941 * 110.72248 * 273.54429 * 11 10 8 14 14 N 1.48531 * 103.37371 * 204.30758 * 13 11 10 15 15 C 1.46902 * 110.99639 * 159.63726 * 14 13 11 16 16 C 1.50704 * 109.47110 * 169.99862 * 15 14 13 17 17 O 1.21297 * 119.99667 * 0.02562 * 16 15 14 18 18 N 1.34777 * 120.00017 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99970 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99818 * 359.97438 * 19 18 16 21 21 C 1.38951 * 120.00156 * 180.02562 * 19 18 16 22 22 N 1.31410 * 119.99855 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00090 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46884 * 60.00254 * 23 21 19 25 25 H 1.48495 * 109.46864 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47025 * 300.00182 * 23 21 19 27 27 C 1.47896 * 105.82104 * 39.12828 * 14 13 11 28 28 C 1.53991 * 107.06112 * 334.66437 * 27 14 13 29 29 H 1.08997 * 110.31706 * 242.21668 * 28 27 14 30 30 O 1.42898 * 110.31148 * 120.13934 * 28 27 14 31 31 H 1.08997 * 109.47099 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46733 * 299.99452 * 1 2 3 33 33 H 1.08991 * 109.47634 * 59.99480 * 1 2 3 34 34 H 1.09002 * 109.46733 * 240.00548 * 2 1 3 35 35 H 1.08994 * 109.47390 * 119.99786 * 2 1 3 36 36 H 1.09009 * 109.46776 * 54.73846 * 6 4 3 37 37 H 1.09001 * 109.46823 * 174.73207 * 6 4 3 38 38 H 1.09000 * 109.46722 * 65.20736 * 7 6 4 39 39 H 1.09001 * 109.46729 * 185.20620 * 7 6 4 40 40 H 1.08992 * 109.46947 * 305.20869 * 7 6 4 41 41 H 0.97007 * 120.00064 * 359.97438 * 10 8 4 42 42 H 1.09004 * 110.66181 * 85.79309 * 13 11 10 43 43 H 1.08994 * 110.66665 * 322.82733 * 13 11 10 44 44 H 1.09002 * 109.47227 * 290.00092 * 15 14 13 45 45 H 1.09001 * 109.46981 * 50.00181 * 15 14 13 46 46 H 0.97002 * 120.00112 * 0.02562 * 18 16 15 47 47 H 0.96997 * 120.00145 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.92497 * 94.01979 * 27 14 13 49 49 H 1.09008 * 109.92002 * 215.11961 * 27 14 13 50 50 H 0.96699 * 113.99502 * 61.46049 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4307 1.4602 0.0194 5 1 3.8703 0.6002 -0.4860 6 6 3.8504 2.7437 -0.6999 7 6 3.4781 2.6437 -2.1806 8 6 3.9118 1.5040 1.4468 9 8 3.1134 1.4440 2.3579 10 7 5.2291 1.6099 1.7111 11 6 5.6968 1.6519 3.0988 12 1 5.0981 0.9941 3.7288 13 6 5.6724 3.1028 3.6419 14 7 6.6821 3.0791 4.7310 15 6 7.1508 4.4357 5.0438 16 6 7.9787 4.4033 6.3027 17 8 8.1608 3.3532 6.8819 18 7 8.5168 5.5410 6.7849 19 6 9.2704 5.5115 7.9297 20 1 9.4325 4.5765 8.4455 21 6 9.8247 6.6845 8.4272 22 7 9.6270 7.8222 7.7999 23 14 10.8509 6.6443 9.9875 24 1 12.0205 5.7513 9.7878 25 1 11.3242 8.0157 10.3041 26 1 10.0243 6.1337 11.1106 27 6 7.7914 2.2366 4.2341 28 6 7.1960 1.2769 3.1873 29 1 7.3117 0.2430 3.5125 30 8 7.8276 1.4711 1.9202 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8898 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5138 0.8899 36 1 3.3372 3.5952 -0.2528 37 1 4.9279 2.8779 -0.6044 38 1 2.3935 2.6025 -2.2804 39 1 3.8589 3.5167 -2.7106 40 1 3.9166 1.7408 -2.6052 41 1 5.8677 1.6575 0.9824 42 1 4.6866 3.3493 4.0365 43 1 5.9618 3.8096 2.8642 44 1 7.7578 4.8096 4.2193 45 1 6.2928 5.0919 5.1901 46 1 8.3709 6.3808 6.3218 47 1 10.0143 8.6410 8.1469 48 1 8.5550 2.8624 3.7721 49 1 8.2248 1.6694 5.0579 50 1 8.7782 1.2939 1.9235 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219302025.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:53:28 Heat of formation + Delta-G solvation = -189.787710 kcal Electronic energy + Delta-G solvation = -30714.311251 eV Core-core repulsion = 26354.548696 eV Total energy + Delta-G solvation = -4359.762555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.53064 -40.59131 -39.61291 -38.46278 -36.81131 -35.91668 -35.55954 -34.62697 -33.29593 -31.75615 -31.57813 -29.45472 -28.47832 -27.41145 -25.92801 -23.85823 -23.13457 -22.70765 -22.04079 -21.34406 -20.99811 -19.89751 -18.93522 -18.49294 -17.99140 -17.79413 -17.16051 -16.62382 -16.38374 -16.27913 -16.18296 -16.01849 -15.80793 -15.35779 -15.22826 -15.02936 -14.90462 -14.67678 -14.31592 -14.20408 -13.68819 -13.43548 -13.37879 -13.30062 -13.19671 -13.00482 -12.95805 -12.83312 -12.65972 -12.49835 -12.43752 -12.27099 -12.13577 -12.08616 -11.99174 -11.70936 -11.49237 -11.41034 -11.13386 -10.40535 -10.30710 -10.13242 -10.02130 -9.40948 -8.46906 -5.95852 1.39198 1.41151 1.49217 1.52220 1.87554 2.03520 2.28178 2.64354 2.82327 3.06587 3.19267 3.28940 3.44812 3.65058 3.75795 3.87697 3.92285 3.99479 4.15234 4.17292 4.23573 4.31759 4.33068 4.35138 4.39125 4.47650 4.47870 4.56898 4.59595 4.78991 4.81174 4.85439 4.91483 4.95521 5.03625 5.11460 5.18574 5.26271 5.32222 5.40032 5.43834 5.74646 5.83486 6.02831 6.08368 6.55253 6.59360 6.75220 7.11853 7.22097 7.54838 8.10382 8.70281 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022046 B = 0.001935 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.779289 B =14468.462558 C =14495.264611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 O -0.376 6.376 4 C 0.080 3.920 5 H 0.116 0.884 6 C -0.115 4.115 7 C -0.144 4.144 8 C 0.484 3.516 9 O -0.573 6.573 10 N -0.693 5.693 11 C 0.155 3.845 12 H 0.092 0.908 13 C 0.032 3.968 14 N -0.510 5.510 15 C 0.051 3.949 16 C 0.443 3.557 17 O -0.614 6.614 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.273 1.273 27 C 0.015 3.985 28 C 0.110 3.890 29 H 0.091 0.909 30 O -0.564 6.564 31 H 0.090 0.910 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.422 0.578 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.103 0.897 46 H 0.395 0.605 47 H 0.278 0.722 48 H 0.057 0.943 49 H 0.072 0.928 50 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.090 -13.156 -24.581 29.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 O -0.294 6.294 4 C 0.019 3.981 5 H 0.133 0.867 6 C -0.152 4.152 7 C -0.201 4.201 8 C 0.271 3.729 9 O -0.451 6.451 10 N -0.349 5.349 11 C 0.048 3.952 12 H 0.110 0.890 13 C -0.097 4.097 14 N -0.235 5.235 15 C -0.080 4.080 16 C 0.230 3.770 17 O -0.500 6.500 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.195 1.195 25 H -0.195 1.195 26 H -0.199 1.199 27 C -0.114 4.114 28 C 0.049 3.951 29 H 0.109 0.891 30 O -0.373 6.373 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.261 0.739 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.121 0.879 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.075 0.925 49 H 0.091 0.909 50 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -10.413 -13.602 -23.230 28.863 hybrid contribution 1.680 0.829 0.438 1.924 sum -8.733 -12.773 -22.791 27.548 Atomic orbital electron populations 1.21726 0.92891 1.03322 1.02520 1.22731 0.96617 0.82854 1.00430 1.87987 1.19202 1.28043 1.94172 1.22233 0.83206 1.02584 0.90083 0.86671 1.21644 1.02287 0.94424 0.96893 1.21688 1.01904 1.03003 0.93526 1.22152 0.82315 0.75216 0.93259 1.90719 1.55308 1.50542 1.48567 1.45671 1.07275 1.73751 1.08193 1.21713 0.93392 0.96076 0.83994 0.88971 1.23568 0.96249 0.97364 0.92525 1.64318 1.11456 1.10144 1.37598 1.21923 0.99262 0.91716 0.95147 1.20642 0.84006 0.83906 0.88444 1.90478 1.64845 1.31752 1.62912 1.41917 1.45949 1.08864 1.24414 1.19623 1.28104 0.95555 1.02946 0.90236 1.26054 0.98959 0.94039 1.02310 1.69667 1.45776 0.99215 1.41494 0.84979 0.78195 0.77677 0.77421 1.19525 1.19508 1.19874 1.23629 0.93570 0.96418 0.97773 1.22685 0.90562 0.98426 0.83418 0.89129 1.86193 1.28624 1.92570 1.29935 0.89157 0.93560 0.91291 0.90771 0.94606 0.92151 0.88323 0.92906 0.91289 0.91188 0.73882 0.90851 0.92018 0.90775 0.87894 0.77083 0.91301 0.92512 0.90924 0.74269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 10.28 71.98 0.74 -1.37 16 2 C 0.05 0.81 6.42 71.98 0.46 1.28 16 3 O -0.38 -7.83 9.17 -129.94 -1.19 -9.02 16 4 C 0.08 1.31 2.52 29.85 0.08 1.39 16 5 H 0.12 1.19 7.80 -2.39 -0.02 1.17 16 6 C -0.11 -1.47 5.59 30.60 0.17 -1.30 16 7 C -0.14 -1.39 9.76 71.98 0.70 -0.68 16 8 C 0.48 11.15 7.18 87.66 0.63 11.78 16 9 O -0.57 -18.92 16.20 15.99 0.26 -18.66 16 10 N -0.69 -13.29 5.00 -436.52 -2.18 -15.47 16 11 C 0.15 3.70 3.30 46.26 0.15 3.86 16 12 H 0.09 2.58 7.70 -2.39 -0.02 2.57 16 13 C 0.03 0.88 6.19 86.65 0.54 1.42 16 14 N -0.51 -17.11 4.91 -887.56 -4.36 -21.47 16 15 C 0.05 1.84 5.27 85.56 0.45 2.29 16 16 C 0.44 21.38 7.61 87.66 0.67 22.04 16 17 O -0.61 -34.09 14.86 -3.08 -0.05 -34.13 16 18 N -0.57 -29.77 5.29 -306.97 -1.62 -31.39 16 19 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16 20 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 22 N -0.92 -49.93 13.05 21.66 0.28 -49.65 16 23 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 24 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 27 C 0.01 0.42 5.68 86.45 0.49 0.91 16 28 C 0.11 2.22 4.31 31.54 0.14 2.35 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 O -0.56 -8.04 11.61 -148.98 -1.73 -9.76 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.79 8.10 -2.39 -0.02 0.77 16 35 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.10 0.91 7.42 -2.39 -0.02 0.89 16 38 H 0.05 0.63 7.97 -2.39 -0.02 0.62 16 39 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.42 6.00 6.53 -92.70 -0.61 5.39 16 42 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 43 H 0.06 1.55 8.02 -2.39 -0.02 1.53 16 44 H 0.07 2.33 7.73 -2.39 -0.02 2.31 16 45 H 0.10 3.43 8.08 -2.39 -0.02 3.41 16 46 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 47 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 48 H 0.06 1.58 7.34 -2.39 -0.02 1.56 16 49 H 0.07 2.49 7.52 -2.38 -0.02 2.47 16 50 H 0.40 2.94 9.11 -74.06 -0.67 2.26 16 Total: -1.00 -77.08 410.23 -3.11 -80.19 By element: Atomic # 1 Polarization: 39.81 SS G_CDS: -1.04 Total: 38.77 kcal Atomic # 6 Polarization: 19.00 SS G_CDS: 6.50 Total: 25.50 kcal Atomic # 7 Polarization: -110.11 SS G_CDS: -7.88 Total: -117.99 kcal Atomic # 8 Polarization: -68.87 SS G_CDS: -2.71 Total: -71.57 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -77.08 -3.11 -80.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219302025.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.594 kcal (2) G-P(sol) polarization free energy of solvation -77.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds