Wall clock time and date at job start Wed Apr 1 2020 02:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47212 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00251 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00115 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00376 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.28698 * 32.87257 * 10 9 7 12 12 C 1.54376 * 110.32650 * 270.63896 * 10 9 7 13 13 N 1.48559 * 104.59803 * 217.25074 * 12 10 9 14 14 C 1.46891 * 111.00178 * 159.04020 * 13 12 10 15 15 C 1.50706 * 109.47171 * 174.70543 * 14 13 12 16 16 O 1.21295 * 119.99800 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00246 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00115 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00143 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99901 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99955 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99861 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47384 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47020 * 120.00165 * 22 20 18 25 25 H 1.48496 * 109.47545 * 240.00272 * 22 20 18 26 26 C 1.48563 * 104.21839 * 39.47794 * 13 12 10 27 27 C 1.54257 * 110.32490 * 155.00083 * 10 9 7 28 28 H 1.09007 * 110.32061 * 237.79325 * 27 10 9 29 29 O 1.42904 * 110.32579 * 359.97438 * 27 10 9 30 30 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 31 31 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 32 32 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 34 34 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 35 35 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 36 36 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 37 37 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 38 38 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 39 39 H 1.09002 * 109.47153 * 300.00216 * 6 5 4 40 40 H 1.09001 * 109.47289 * 60.00300 * 6 5 4 41 41 H 0.97004 * 120.00228 * 359.97438 * 9 7 6 42 42 H 1.09006 * 110.40800 * 336.02659 * 12 10 9 43 43 H 1.09000 * 110.41574 * 98.46571 * 12 10 9 44 44 H 1.08999 * 109.47280 * 294.70097 * 14 13 12 45 45 H 1.09000 * 109.47507 * 54.70804 * 14 13 12 46 46 H 0.97007 * 119.99580 * 0.02562 * 17 15 14 47 47 H 0.97001 * 119.99664 * 179.97438 * 21 20 18 48 48 H 1.09000 * 110.40719 * 201.73856 * 26 13 12 49 49 H 1.08997 * 110.40847 * 79.30231 * 26 13 12 50 50 H 0.96701 * 114.00155 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5822 0.0000 6 6 5.6830 2.4614 0.0000 7 6 6.2960 3.8381 0.0013 8 8 5.5832 4.8194 0.0016 9 7 7.6364 3.9790 0.0010 10 6 8.2323 5.3173 0.0016 11 1 7.6018 6.0115 0.5572 12 6 8.4353 5.8147 -1.4456 13 7 9.7201 6.5596 -1.4089 14 6 10.3033 6.6700 -2.7525 15 6 11.5331 7.5393 -2.6965 16 8 11.8890 8.0192 -1.6409 17 7 12.2381 7.7827 -3.8191 18 6 13.3571 8.5730 -3.7680 19 1 13.6739 9.0003 -2.8282 20 6 14.0836 8.8243 -4.9256 21 7 13.6977 8.3048 -6.0693 22 14 15.6079 9.9018 -4.8561 23 1 15.8266 10.3608 -3.4608 24 1 16.7868 9.1214 -5.3105 25 1 15.4226 11.0794 -5.7416 26 6 10.5874 5.7474 -0.5170 27 6 9.6481 5.2731 0.6125 28 1 9.7130 5.9470 1.4669 29 8 9.9777 3.9393 1.0055 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6887 1.8463 0.8900 35 1 3.8575 0.6435 0.8891 36 1 3.8568 0.6439 -0.8908 37 1 3.8359 3.1237 -0.8895 38 1 3.8366 3.1226 0.8905 39 1 6.0046 1.9201 0.8897 40 1 6.0047 1.9210 -0.8902 41 1 8.2066 3.1943 0.0003 42 1 8.5050 4.9703 -2.1315 43 1 7.6203 6.4767 -1.7380 44 1 10.5757 5.6781 -3.1130 45 1 9.5743 7.1152 -3.4296 46 1 11.9536 7.3985 -4.6632 47 1 14.2047 8.4805 -6.8773 48 1 11.3927 6.3590 -0.1102 49 1 10.9938 4.8927 -1.0575 50 1 10.8577 3.8505 1.3964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219332633.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:57 Heat of formation + Delta-G solvation = -166.951122 kcal Electronic energy + Delta-G solvation = -29493.216696 eV Core-core repulsion = 25134.444409 eV Total energy + Delta-G solvation = -4358.772287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.35866 -39.07984 -38.36651 -37.86713 -35.83677 -35.10972 -34.32591 -33.81927 -31.33072 -30.85050 -29.80821 -28.05352 -27.01237 -26.36844 -24.49414 -23.97343 -21.77610 -21.50325 -20.73639 -20.44394 -19.21119 -17.91758 -17.75393 -17.15712 -16.77032 -16.74118 -16.12418 -15.94538 -15.82623 -15.47934 -15.15828 -14.93989 -14.68470 -14.41446 -14.25340 -13.97288 -13.66037 -13.44558 -13.15971 -12.94568 -12.88837 -12.82865 -12.14319 -12.12880 -12.01816 -11.87233 -11.78401 -11.55990 -11.46043 -11.35439 -11.34317 -11.11822 -11.01810 -10.88224 -10.36152 -10.25010 -10.11733 -10.09111 -9.96866 -9.52790 -9.16785 -8.58715 -8.09761 -7.97738 -6.43924 -3.84801 2.51443 2.87382 3.14566 3.25410 3.32186 3.34835 3.85851 3.88351 4.10094 4.29146 4.46844 4.51173 4.55692 4.58364 4.63013 4.84402 4.84960 4.94066 4.96763 5.02052 5.05760 5.12122 5.21365 5.22076 5.25549 5.32235 5.34522 5.36707 5.43996 5.54040 5.63478 5.73860 5.81382 5.85783 5.92275 5.96019 5.97517 6.20148 6.22256 6.32350 6.72593 6.94723 7.07736 7.39285 7.45560 7.53211 8.03714 8.13665 8.59056 9.15808 9.51800 10.03258 10.73880 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.001561 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.153772 B =17936.148054 C =18632.128707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.119 4.119 5 C -0.102 4.102 6 C -0.138 4.138 7 C 0.510 3.490 8 O -0.544 6.544 9 N -0.711 5.711 10 C 0.151 3.849 11 H 0.105 0.895 12 C 0.020 3.980 13 N -0.478 5.478 14 C 0.036 3.964 15 C 0.445 3.555 16 O -0.579 6.579 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.006 3.994 27 C 0.093 3.907 28 H 0.078 0.922 29 O -0.568 6.568 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.410 0.590 42 H 0.048 0.952 43 H 0.090 0.910 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.105 0.895 49 H 0.050 0.950 50 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.859 -17.147 11.245 27.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.157 4.157 5 C -0.140 4.140 6 C -0.178 4.178 7 C 0.297 3.703 8 O -0.421 6.421 9 N -0.364 5.364 10 C 0.045 3.955 11 H 0.123 0.877 12 C -0.109 4.109 13 N -0.203 5.203 14 C -0.096 4.096 15 C 0.230 3.770 16 O -0.463 6.463 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.122 4.122 27 C 0.033 3.967 28 H 0.096 0.904 29 O -0.374 6.374 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.246 0.754 42 H 0.067 0.933 43 H 0.108 0.892 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.124 0.876 49 H 0.068 0.932 50 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -19.576 -15.827 11.736 27.775 hybrid contribution 1.417 -0.489 -0.927 1.762 sum -18.159 -16.316 10.809 26.698 Atomic orbital electron populations 1.22740 0.80970 1.02746 1.00059 1.87859 1.19789 1.28317 1.95463 1.22567 0.94197 0.84476 1.00453 1.21532 0.93056 0.97601 1.03466 1.21232 0.92830 0.95940 1.03958 1.21632 0.96829 0.94692 1.04670 1.20749 0.82193 0.91728 0.75630 1.90710 1.60997 1.40779 1.49629 1.45824 1.06509 1.09249 1.74796 1.21727 0.92566 0.85042 0.96182 0.87653 1.23609 0.94218 0.97303 0.95819 1.65105 1.02030 1.43684 1.09494 1.22072 0.97488 0.99330 0.90696 1.19657 0.85913 0.86253 0.85189 1.90497 1.70954 1.55093 1.29747 1.41860 1.24628 1.44935 1.08630 1.19746 1.01708 1.25083 0.96297 0.87848 1.25262 0.99668 0.98281 0.94707 1.69620 1.40591 1.44904 0.99154 0.85803 0.80667 0.79307 0.78583 1.19209 1.20790 1.20725 1.23916 0.97177 0.96714 0.94427 1.22864 0.93496 0.83616 0.96708 0.90364 1.86239 1.39490 1.28121 1.83525 0.94052 0.94025 0.89640 0.93133 0.93172 0.90996 0.90950 0.90872 0.90938 0.88732 0.88754 0.75377 0.93346 0.89201 0.93142 0.89033 0.77498 0.91911 0.87647 0.93222 0.76506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.40 -3.41 10.70 -35.23 -0.38 -3.79 16 3 C 0.06 0.43 5.94 37.16 0.22 0.65 16 4 C -0.12 -0.79 5.58 -26.74 -0.15 -0.94 16 5 C -0.10 -0.76 4.50 -26.74 -0.12 -0.88 16 6 C -0.14 -0.99 5.70 -27.88 -0.16 -1.15 16 7 C 0.51 5.57 7.83 -10.98 -0.09 5.48 16 8 O -0.54 -7.98 15.63 5.56 0.09 -7.90 16 9 N -0.71 -7.36 4.85 -52.47 -0.25 -7.62 16 10 C 0.15 1.85 3.41 -66.55 -0.23 1.62 16 11 H 0.11 1.42 7.56 -51.93 -0.39 1.03 16 12 C 0.02 0.27 6.20 -2.18 -0.01 0.26 16 13 N -0.48 -7.88 5.06 -231.42 -1.17 -9.05 16 14 C 0.04 0.64 5.30 -4.98 -0.03 0.61 16 15 C 0.44 10.36 7.59 -10.98 -0.08 10.28 16 16 O -0.58 -15.29 14.42 5.54 0.08 -15.21 16 17 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 18 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 19 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 22 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 C 0.01 0.09 5.54 -2.18 -0.01 0.08 16 27 C 0.09 1.07 4.42 -25.36 -0.11 0.96 16 28 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 29 O -0.57 -5.23 11.53 -35.23 -0.41 -5.63 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.41 3.66 7.26 -40.82 -0.30 3.36 16 42 H 0.05 0.63 7.91 -51.93 -0.41 0.22 16 43 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.05 0.82 7.88 -51.93 -0.41 0.41 16 45 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 46 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 47 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 48 H 0.11 1.82 6.91 -51.93 -0.36 1.46 16 49 H 0.05 0.72 7.76 -51.93 -0.40 0.32 16 50 H 0.39 2.26 9.12 45.56 0.42 2.67 16 LS Contribution 411.26 15.07 6.20 6.20 Total: -1.00 -34.02 411.26 -7.70 -41.72 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -7.60 Total: 12.91 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 0.10 Total: 10.37 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.76 Total: -54.52 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -0.62 Total: -32.53 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.02 -7.70 -41.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219332633.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.229 kcal (2) G-P(sol) polarization free energy of solvation -34.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds