Wall clock time and date at job start Wed Apr 1 2020 02:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47212 * 180.02562 * 6 5 4 8 8 O 1.21279 * 120.00251 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00115 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00376 * 179.97438 * 9 7 6 11 11 H 1.08998 * 110.28698 * 32.87257 * 10 9 7 12 12 C 1.54376 * 110.32650 * 270.63896 * 10 9 7 13 13 N 1.48559 * 104.59803 * 217.25074 * 12 10 9 14 14 C 1.46891 * 111.00178 * 159.04020 * 13 12 10 15 15 C 1.50706 * 109.47171 * 174.70543 * 14 13 12 16 16 O 1.21295 * 119.99800 * 0.02562 * 15 14 13 17 17 N 1.34774 * 120.00246 * 179.97438 * 15 14 13 18 18 C 1.37091 * 120.00115 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00143 * 0.02562 * 18 17 15 20 20 C 1.38956 * 119.99901 * 180.02562 * 18 17 15 21 21 N 1.31408 * 119.99955 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99861 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47384 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47020 * 120.00165 * 22 20 18 25 25 H 1.48496 * 109.47545 * 240.00272 * 22 20 18 26 26 C 1.48563 * 104.21839 * 39.47794 * 13 12 10 27 27 C 1.54257 * 110.32490 * 155.00083 * 10 9 7 28 28 H 1.09007 * 110.32061 * 237.79325 * 27 10 9 29 29 O 1.42904 * 110.32579 * 359.97438 * 27 10 9 30 30 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 31 31 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 32 32 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 34 34 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 35 35 H 1.09002 * 109.47153 * 300.00307 * 4 3 2 36 36 H 1.08998 * 109.47533 * 59.99936 * 4 3 2 37 37 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 38 38 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 39 39 H 1.09002 * 109.47153 * 300.00216 * 6 5 4 40 40 H 1.09001 * 109.47289 * 60.00300 * 6 5 4 41 41 H 0.97004 * 120.00228 * 359.97438 * 9 7 6 42 42 H 1.09006 * 110.40800 * 336.02659 * 12 10 9 43 43 H 1.09000 * 110.41574 * 98.46571 * 12 10 9 44 44 H 1.08999 * 109.47280 * 294.70097 * 14 13 12 45 45 H 1.09000 * 109.47507 * 54.70804 * 14 13 12 46 46 H 0.97007 * 119.99580 * 0.02562 * 17 15 14 47 47 H 0.97001 * 119.99664 * 179.97438 * 21 20 18 48 48 H 1.09000 * 110.40719 * 201.73856 * 26 13 12 49 49 H 1.08997 * 110.40847 * 79.30231 * 26 13 12 50 50 H 0.96701 * 114.00155 * 179.97438 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5822 0.0000 6 6 5.6830 2.4614 0.0000 7 6 6.2960 3.8381 0.0013 8 8 5.5832 4.8194 0.0016 9 7 7.6364 3.9790 0.0010 10 6 8.2323 5.3173 0.0016 11 1 7.6018 6.0115 0.5572 12 6 8.4353 5.8147 -1.4456 13 7 9.7201 6.5596 -1.4089 14 6 10.3033 6.6700 -2.7525 15 6 11.5331 7.5393 -2.6965 16 8 11.8890 8.0192 -1.6409 17 7 12.2381 7.7827 -3.8191 18 6 13.3571 8.5730 -3.7680 19 1 13.6739 9.0003 -2.8282 20 6 14.0836 8.8243 -4.9256 21 7 13.6977 8.3048 -6.0693 22 14 15.6079 9.9018 -4.8561 23 1 15.8266 10.3608 -3.4608 24 1 16.7868 9.1214 -5.3105 25 1 15.4226 11.0794 -5.7416 26 6 10.5874 5.7474 -0.5170 27 6 9.6481 5.2731 0.6125 28 1 9.7130 5.9470 1.4669 29 8 9.9777 3.9393 1.0055 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6886 1.8464 -0.8900 34 1 1.6887 1.8463 0.8900 35 1 3.8575 0.6435 0.8891 36 1 3.8568 0.6439 -0.8908 37 1 3.8359 3.1237 -0.8895 38 1 3.8366 3.1226 0.8905 39 1 6.0046 1.9201 0.8897 40 1 6.0047 1.9210 -0.8902 41 1 8.2066 3.1943 0.0003 42 1 8.5050 4.9703 -2.1315 43 1 7.6203 6.4767 -1.7380 44 1 10.5757 5.6781 -3.1130 45 1 9.5743 7.1152 -3.4296 46 1 11.9536 7.3985 -4.6632 47 1 14.2047 8.4805 -6.8773 48 1 11.3927 6.3590 -0.1102 49 1 10.9938 4.8927 -1.0575 50 1 10.8577 3.8505 1.3964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219332633.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:56 Heat of formation + Delta-G solvation = -196.374434 kcal Electronic energy + Delta-G solvation = -29494.492586 eV Core-core repulsion = 25134.444409 eV Total energy + Delta-G solvation = -4360.048177 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.36271 -40.34835 -39.40272 -38.89506 -36.88181 -35.94325 -35.69736 -35.18980 -33.29959 -31.84960 -30.67352 -29.09739 -28.10885 -27.30800 -26.05194 -24.79657 -22.80107 -22.35035 -21.63043 -21.30328 -20.99377 -19.88774 -18.63663 -18.04589 -17.79663 -17.32054 -17.30516 -16.91386 -16.61822 -16.57278 -16.34281 -16.24476 -15.89193 -15.79326 -15.27382 -15.13598 -14.98446 -14.72638 -14.22846 -14.09171 -13.80419 -13.58313 -13.44057 -13.43553 -13.19025 -12.97082 -12.63574 -12.58082 -12.54894 -12.40748 -12.38110 -12.31695 -12.11904 -12.00810 -11.87398 -11.57409 -11.49329 -11.04634 -10.87069 -10.61936 -10.37253 -10.08812 -10.01506 -9.47999 -8.47084 -5.95711 1.36320 1.41983 1.55882 1.67833 2.02036 2.04164 2.29067 2.73719 2.90006 3.14216 3.19330 3.31551 3.48854 3.75256 3.83950 3.99448 4.01117 4.04779 4.18272 4.25457 4.33280 4.34481 4.36651 4.40368 4.45588 4.48931 4.53159 4.54944 4.63080 4.75901 4.77706 4.84510 4.85631 4.86755 4.92210 4.99654 5.01674 5.30954 5.36601 5.40907 5.44808 5.73260 5.79483 6.03240 6.22754 6.59460 6.62657 6.76392 7.12372 7.32751 7.55140 8.10475 8.70584 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024087 B = 0.001561 C = 0.001502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.153772 B =17936.148054 C =18632.128707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.055 3.945 4 C -0.111 4.111 5 C -0.096 4.096 6 C -0.130 4.130 7 C 0.507 3.493 8 O -0.586 6.586 9 N -0.700 5.700 10 C 0.153 3.847 11 H 0.092 0.908 12 C 0.027 3.973 13 N -0.502 5.502 14 C 0.048 3.952 15 C 0.443 3.557 16 O -0.614 6.614 17 N -0.573 5.573 18 C -0.332 4.332 19 H 0.080 0.920 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.272 1.272 26 C 0.009 3.991 27 C 0.111 3.889 28 H 0.082 0.918 29 O -0.562 6.562 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.420 0.580 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.107 0.893 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.074 0.926 49 H 0.054 0.946 50 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.076 -18.901 11.303 29.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.021 4.021 4 C -0.148 4.148 5 C -0.135 4.135 6 C -0.170 4.170 7 C 0.296 3.704 8 O -0.467 6.467 9 N -0.354 5.354 10 C 0.047 3.953 11 H 0.110 0.890 12 C -0.102 4.102 13 N -0.227 5.227 14 C -0.083 4.083 15 C 0.230 3.770 16 O -0.500 6.500 17 N -0.211 5.211 18 C -0.461 4.461 19 H 0.098 0.902 20 C -0.212 4.212 21 N -0.562 5.562 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.198 1.198 26 C -0.119 4.119 27 C 0.051 3.949 28 H 0.100 0.900 29 O -0.370 6.370 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.258 0.742 42 H 0.079 0.921 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.125 0.875 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -19.788 -17.629 11.792 29.007 hybrid contribution 1.438 0.031 -0.903 1.698 sum -18.350 -17.598 10.889 27.659 Atomic orbital electron populations 1.22913 0.79724 1.03771 1.00726 1.87817 1.21316 1.29014 1.95602 1.22643 0.94637 0.84182 1.00670 1.21449 0.92612 0.96883 1.03901 1.21151 0.93333 0.96204 1.02777 1.21666 0.96037 0.92493 1.06784 1.21431 0.81947 0.92703 0.74365 1.90699 1.61871 1.42518 1.51564 1.45749 1.06605 1.08730 1.74295 1.21524 0.92818 0.85883 0.95122 0.89025 1.23558 0.92355 0.97221 0.97054 1.65009 1.03356 1.45463 1.08865 1.21919 0.95118 0.99127 0.92163 1.20620 0.86699 0.85638 0.84024 1.90473 1.72164 1.56394 1.30935 1.41920 1.24609 1.45213 1.09348 1.19699 1.03552 1.26904 0.95973 0.90218 1.26025 1.02062 0.99052 0.94044 1.69679 1.41573 1.45349 0.99581 0.84876 0.77357 0.77849 0.78289 1.19716 1.19571 1.19769 1.23835 0.96901 0.95987 0.95195 1.22535 0.92085 0.84716 0.95576 0.90041 1.86207 1.40971 1.26348 1.83480 0.93328 0.93423 0.88523 0.93039 0.92909 0.90421 0.90547 0.92204 0.92094 0.86435 0.86563 0.74181 0.92148 0.89886 0.90966 0.87495 0.77078 0.91330 0.90736 0.92781 0.74499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.50 16 2 O -0.42 -6.76 10.70 -148.98 -1.59 -8.36 16 3 C 0.06 0.74 5.94 71.98 0.43 1.16 16 4 C -0.11 -1.28 5.58 30.59 0.17 -1.11 16 5 C -0.10 -1.32 4.50 30.59 0.14 -1.18 16 6 C -0.13 -1.53 5.70 29.85 0.17 -1.36 16 7 C 0.51 10.24 7.83 87.66 0.69 10.93 16 8 O -0.59 -16.98 15.63 -3.03 -0.05 -17.03 16 9 N -0.70 -13.04 4.85 -438.31 -2.13 -15.17 16 10 C 0.15 3.58 3.41 45.88 0.16 3.73 16 11 H 0.09 2.44 7.56 -2.39 -0.02 2.42 16 12 C 0.03 0.70 6.20 86.45 0.54 1.24 16 13 N -0.50 -16.26 5.06 -886.07 -4.49 -20.74 16 14 C 0.05 1.68 5.30 85.56 0.45 2.14 16 15 C 0.44 20.95 7.59 87.66 0.66 21.62 16 16 O -0.61 -33.37 14.42 -3.07 -0.04 -33.41 16 17 N -0.57 -29.28 5.29 -306.98 -1.62 -30.90 16 18 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 19 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 20 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 21 N -0.92 -49.46 13.05 21.66 0.28 -49.17 16 22 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 26 C 0.01 0.27 5.54 86.45 0.48 0.75 16 27 C 0.11 2.42 4.42 31.49 0.14 2.56 16 28 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 29 O -0.56 -8.89 11.53 -148.98 -1.72 -10.61 16 30 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 38 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 39 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.42 6.22 7.26 -92.71 -0.67 5.54 16 42 H 0.06 1.44 7.91 -2.38 -0.02 1.42 16 43 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.07 2.22 7.88 -2.39 -0.02 2.20 16 45 H 0.11 3.40 8.13 -2.39 -0.02 3.38 16 46 H 0.40 19.24 7.90 -92.70 -0.73 18.51 16 47 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 48 H 0.07 2.63 6.91 -2.39 -0.02 2.61 16 49 H 0.05 1.49 7.76 -2.39 -0.02 1.47 16 50 H 0.40 3.65 9.12 -74.06 -0.68 2.98 16 Total: -1.00 -74.46 411.26 -3.89 -78.36 By element: Atomic # 1 Polarization: 39.58 SS G_CDS: -1.11 Total: 38.47 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 6.55 Total: 23.89 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -7.95 Total: -115.98 kcal Atomic # 8 Polarization: -66.01 SS G_CDS: -3.40 Total: -69.41 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -74.46 -3.89 -78.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219332633.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.019 kcal (2) G-P(sol) polarization free energy of solvation -74.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds