Wall clock time and date at job start Wed Apr 1 2020 01:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 H 1.08998 * 109.47241 * 305.00465 * 3 2 1 5 5 C 1.53003 * 109.47086 * 185.00057 * 3 2 1 6 6 O 1.42908 * 109.46790 * 65.00166 * 3 2 1 7 7 C 1.42905 * 113.99450 * 209.99827 * 6 3 2 8 8 C 1.50705 * 109.46345 * 180.02562 * 7 6 3 9 9 O 1.21273 * 120.00344 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99464 * 180.02562 * 8 7 6 11 11 C 1.46493 * 119.99809 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.29151 * 35.67362 * 11 10 8 13 13 C 1.54385 * 110.32510 * 273.54523 * 11 10 8 14 14 N 1.48562 * 104.59406 * 217.25093 * 13 11 10 15 15 C 1.46901 * 110.99567 * 159.04212 * 14 13 11 16 16 C 1.50701 * 109.46921 * 169.99894 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46986 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47457 * 119.99901 * 23 21 19 26 26 H 1.48501 * 109.47104 * 239.99973 * 23 21 19 27 27 C 1.48554 * 104.22366 * 39.48381 * 14 13 11 28 28 C 1.54258 * 110.32488 * 157.91229 * 11 10 8 29 29 H 1.09008 * 110.32273 * 237.79075 * 28 11 10 30 30 O 1.42905 * 110.32306 * 359.89208 * 28 11 10 31 31 H 1.08997 * 109.46918 * 299.99816 * 1 2 3 32 32 H 1.08996 * 109.46931 * 59.99742 * 1 2 3 33 33 H 1.09001 * 109.47004 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47199 * 239.99992 * 2 1 3 35 35 H 1.08999 * 109.47305 * 120.00619 * 2 1 3 36 36 H 1.09003 * 109.47199 * 60.00488 * 5 3 2 37 37 H 1.09001 * 109.46856 * 180.02562 * 5 3 2 38 38 H 1.08995 * 109.47043 * 299.99961 * 5 3 2 39 39 H 1.08994 * 109.47046 * 60.00675 * 7 6 3 40 40 H 1.08991 * 109.47283 * 300.00025 * 7 6 3 41 41 H 0.96998 * 119.99957 * 359.97438 * 10 8 7 42 42 H 1.09005 * 110.40729 * 98.47143 * 13 11 10 43 43 H 1.08997 * 110.41172 * 336.03293 * 13 11 10 44 44 H 1.09002 * 109.47401 * 49.99922 * 15 14 13 45 45 H 1.09001 * 109.46874 * 289.99935 * 15 14 13 46 46 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 48 48 H 1.09002 * 110.41148 * 79.29006 * 27 14 13 49 49 H 1.08997 * 110.41369 * 201.73410 * 27 14 13 50 50 H 0.96700 * 114.00160 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5649 1.4443 -0.1257 6 8 1.6620 2.0813 1.2212 7 6 1.4560 3.4903 1.1004 8 6 1.0639 4.0572 2.4405 9 8 0.9706 3.3268 3.4041 10 7 0.8170 5.3760 2.5681 11 6 0.4353 5.9271 3.8707 12 1 0.9621 5.4064 4.6705 13 6 -1.0912 5.8164 4.0733 14 7 -1.4651 7.0632 4.7895 15 6 -2.8955 7.3550 4.6264 16 6 -3.2889 8.4745 5.5555 17 8 -2.4590 8.9798 6.2816 18 7 -4.5625 8.9148 5.5787 19 6 -4.9202 9.9336 6.4236 20 1 -4.1815 10.3829 7.0707 21 6 -6.2332 10.3873 6.4479 22 7 -7.1322 9.8401 5.6608 23 14 -6.7205 11.7758 7.5985 24 1 -5.5329 12.2164 8.3734 25 1 -7.2448 12.9158 6.8044 26 1 -7.7715 11.2986 8.5329 27 6 -0.6311 8.1144 4.1520 28 6 0.7379 7.4388 3.9224 29 1 1.4133 7.6617 4.7485 30 8 1.3072 7.8736 2.6859 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.8532 0.9570 -1.0572 37 1 3.9282 2.4719 -0.1253 38 1 3.9995 0.9052 0.7160 39 1 0.6618 3.6807 0.3785 40 1 2.3769 3.9643 0.7610 41 1 0.8920 5.9602 1.7975 42 1 -1.3318 4.9430 4.6795 43 1 -1.5996 5.7638 3.1107 44 1 -3.4775 6.4644 4.8637 45 1 -3.0904 7.6525 3.5960 46 1 -5.2259 8.5110 4.9977 47 1 -8.0488 10.1571 5.6776 48 1 -1.0676 8.4214 3.2015 49 1 -0.5255 8.9712 4.8173 50 1 1.5179 8.8170 2.6601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219476035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:55 Heat of formation + Delta-G solvation = -158.789962 kcal Electronic energy + Delta-G solvation = -30175.408268 eV Core-core repulsion = 25816.989876 eV Total energy + Delta-G solvation = -4358.418392 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.39227 -39.28623 -38.35405 -37.77096 -35.86004 -34.37541 -34.10762 -33.81617 -31.30569 -30.62484 -30.21202 -28.63011 -27.54676 -26.21408 -24.26125 -23.96381 -21.61606 -21.40773 -21.16794 -20.50242 -19.21012 -17.92889 -17.83232 -17.47799 -17.19615 -16.29494 -16.10656 -15.83372 -15.47634 -14.94453 -14.87290 -14.69638 -14.48604 -14.26047 -14.07235 -13.84708 -13.69653 -13.54332 -13.31329 -13.06994 -12.95288 -12.88708 -12.44250 -12.13641 -12.05639 -11.98598 -11.71535 -11.56266 -11.47213 -11.35779 -11.32921 -11.12458 -10.93946 -10.90190 -10.35335 -10.24042 -10.14867 -9.98571 -9.91575 -9.51737 -9.20111 -8.59164 -8.08387 -7.96636 -6.42642 -3.83545 2.46039 2.51892 3.15451 3.26114 3.33075 3.50672 3.88655 3.91923 4.09592 4.28393 4.36601 4.51218 4.55704 4.57871 4.62967 4.72474 4.78309 4.88525 4.97059 5.03456 5.13057 5.16996 5.22326 5.25133 5.25383 5.28751 5.39567 5.57092 5.62051 5.64614 5.73276 5.75695 5.79647 5.80660 5.90421 5.95331 6.02211 6.14675 6.22125 6.27852 6.77194 6.93888 7.07181 7.34751 7.42965 7.54419 8.05158 8.10819 8.60634 9.17232 9.53390 10.05029 10.75208 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.001828 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.837522 B =15316.633351 C =16214.586237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.082 3.918 4 H 0.062 0.938 5 C -0.177 4.177 6 O -0.354 6.354 7 C 0.046 3.954 8 C 0.512 3.488 9 O -0.519 6.519 10 N -0.710 5.710 11 C 0.154 3.846 12 H 0.106 0.894 13 C 0.020 3.980 14 N -0.477 5.477 15 C 0.036 3.964 16 C 0.446 3.554 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C 0.006 3.994 28 C 0.095 3.905 29 H 0.080 0.920 30 O -0.568 6.568 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.410 0.590 42 H 0.091 0.909 43 H 0.049 0.951 44 H 0.091 0.909 45 H 0.052 0.948 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.051 0.949 49 H 0.102 0.898 50 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.733 -13.121 -16.711 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C 0.025 3.975 4 H 0.080 0.920 5 C -0.234 4.234 6 O -0.272 6.272 7 C -0.035 4.035 8 C 0.297 3.703 9 O -0.394 6.394 10 N -0.365 5.365 11 C 0.049 3.951 12 H 0.124 0.876 13 C -0.110 4.110 14 N -0.202 5.202 15 C -0.096 4.096 16 C 0.231 3.769 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.122 4.122 28 C 0.035 3.965 29 H 0.098 0.902 30 O -0.375 6.375 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.246 0.754 42 H 0.110 0.890 43 H 0.067 0.933 44 H 0.109 0.891 45 H 0.070 0.930 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.069 0.931 49 H 0.121 0.879 50 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 18.025 -14.037 -14.931 27.292 hybrid contribution -0.967 1.589 -1.208 2.218 sum 17.057 -12.448 -16.139 26.578 Atomic orbital electron populations 1.21748 0.95207 1.01801 1.02323 1.21624 0.96806 0.94546 1.02768 1.22246 0.94323 0.94279 0.86692 0.92042 1.22312 0.96042 1.02465 1.02599 1.88070 1.89383 1.17784 1.31960 1.22198 1.01468 0.84267 0.95525 1.20271 0.77443 0.82312 0.90305 1.90746 1.50229 1.58462 1.39917 1.45662 1.70372 1.07821 1.12682 1.21728 0.95261 0.91838 0.86294 0.87616 1.23623 0.94280 0.95133 0.97933 1.65089 1.03951 1.01280 1.49872 1.22074 0.89301 0.99802 0.98429 1.19664 0.83620 0.86444 0.87199 1.90505 1.50381 1.60416 1.44811 1.41866 1.07992 1.32935 1.37421 1.19745 0.94756 1.10834 1.17406 0.87851 1.25264 0.95517 0.99170 0.98061 1.69623 1.03452 1.42587 1.38688 0.85798 0.78675 0.80211 0.79644 1.19226 1.20804 1.20740 1.23906 0.92588 0.96967 0.98781 1.22848 0.94224 0.92941 0.86508 0.90199 1.86220 1.84067 1.30755 1.36420 0.91667 0.93098 0.92645 0.90717 0.90865 0.91529 0.92451 0.91534 0.90374 0.90422 0.75377 0.89027 0.93309 0.89069 0.93039 0.77517 0.91933 0.93126 0.87945 0.76423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.81 37.16 0.36 -0.77 16 2 C -0.12 -0.83 5.64 -26.73 -0.15 -0.98 16 3 C 0.08 0.60 2.72 -26.73 -0.07 0.53 16 4 H 0.06 0.36 7.79 -51.93 -0.40 -0.04 16 5 C -0.18 -1.09 9.53 37.16 0.35 -0.73 16 6 O -0.35 -3.77 9.06 -55.14 -0.50 -4.27 16 7 C 0.05 0.39 6.23 36.01 0.22 0.62 16 8 C 0.51 6.15 7.90 -10.98 -0.09 6.06 16 9 O -0.52 -8.57 16.20 -14.35 -0.23 -8.80 16 10 N -0.71 -7.47 4.90 -52.47 -0.26 -7.73 16 11 C 0.15 1.91 3.36 -66.55 -0.22 1.68 16 12 H 0.11 1.44 7.64 -51.93 -0.40 1.04 16 13 C 0.02 0.27 6.17 -2.18 -0.01 0.26 16 14 N -0.48 -7.86 4.98 -231.41 -1.15 -9.02 16 15 C 0.04 0.64 5.32 -4.97 -0.03 0.61 16 16 C 0.45 10.44 7.63 -10.98 -0.08 10.35 16 17 O -0.58 -15.39 14.80 5.55 0.08 -15.30 16 18 N -0.57 -14.26 5.29 -10.96 -0.06 -14.32 16 19 C -0.30 -8.26 9.68 -14.94 -0.14 -8.41 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 23 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 C 0.01 0.09 5.67 -2.19 -0.01 0.08 16 28 C 0.09 1.06 4.42 -25.35 -0.11 0.95 16 29 H 0.08 0.87 8.14 -51.92 -0.42 0.45 16 30 O -0.57 -4.96 11.50 -35.23 -0.41 -5.36 16 31 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.33 7.87 -51.93 -0.41 -0.07 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 40 H 0.08 0.50 7.87 -51.93 -0.41 0.09 16 41 H 0.41 3.56 7.18 -40.82 -0.29 3.26 16 42 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.05 0.64 7.91 -51.93 -0.41 0.23 16 44 H 0.09 1.51 8.08 -51.93 -0.42 1.09 16 45 H 0.05 0.83 7.77 -51.93 -0.40 0.43 16 46 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 47 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 48 H 0.05 0.70 7.69 -51.93 -0.40 0.30 16 49 H 0.10 1.71 7.24 -51.93 -0.38 1.33 16 50 H 0.39 2.04 9.12 45.56 0.42 2.46 16 LS Contribution 410.76 15.07 6.19 6.19 Total: -1.00 -34.77 410.76 -8.26 -43.02 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -7.55 Total: 12.67 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: -0.08 Total: 10.73 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.74 Total: -54.83 kcal Atomic # 8 Polarization: -32.68 SS G_CDS: -1.05 Total: -33.73 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -34.77 -8.26 -43.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219476035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.766 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds