Wall clock time and date at job start Wed Apr 1 2020 01:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 H 1.08998 * 109.47241 * 305.00465 * 3 2 1 5 5 C 1.53003 * 109.47086 * 185.00057 * 3 2 1 6 6 O 1.42908 * 109.46790 * 65.00166 * 3 2 1 7 7 C 1.42905 * 113.99450 * 209.99827 * 6 3 2 8 8 C 1.50705 * 109.46345 * 180.02562 * 7 6 3 9 9 O 1.21273 * 120.00344 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99464 * 180.02562 * 8 7 6 11 11 C 1.46493 * 119.99809 * 179.97438 * 10 8 7 12 12 H 1.09005 * 110.29151 * 35.67362 * 11 10 8 13 13 C 1.54385 * 110.32510 * 273.54523 * 11 10 8 14 14 N 1.48562 * 104.59406 * 217.25093 * 13 11 10 15 15 C 1.46901 * 110.99567 * 159.04212 * 14 13 11 16 16 C 1.50701 * 109.46921 * 169.99894 * 15 14 13 17 17 O 1.21294 * 119.99849 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99795 * 179.97438 * 16 15 14 19 19 C 1.37101 * 119.99707 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99704 * 359.97438 * 19 18 16 21 21 C 1.38941 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00180 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00273 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.46986 * 359.97438 * 23 21 19 25 25 H 1.48494 * 109.47457 * 119.99901 * 23 21 19 26 26 H 1.48501 * 109.47104 * 239.99973 * 23 21 19 27 27 C 1.48554 * 104.22366 * 39.48381 * 14 13 11 28 28 C 1.54258 * 110.32488 * 157.91229 * 11 10 8 29 29 H 1.09008 * 110.32273 * 237.79075 * 28 11 10 30 30 O 1.42905 * 110.32306 * 359.89208 * 28 11 10 31 31 H 1.08997 * 109.46918 * 299.99816 * 1 2 3 32 32 H 1.08996 * 109.46931 * 59.99742 * 1 2 3 33 33 H 1.09001 * 109.47004 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47199 * 239.99992 * 2 1 3 35 35 H 1.08999 * 109.47305 * 120.00619 * 2 1 3 36 36 H 1.09003 * 109.47199 * 60.00488 * 5 3 2 37 37 H 1.09001 * 109.46856 * 180.02562 * 5 3 2 38 38 H 1.08995 * 109.47043 * 299.99961 * 5 3 2 39 39 H 1.08994 * 109.47046 * 60.00675 * 7 6 3 40 40 H 1.08991 * 109.47283 * 300.00025 * 7 6 3 41 41 H 0.96998 * 119.99957 * 359.97438 * 10 8 7 42 42 H 1.09005 * 110.40729 * 98.47143 * 13 11 10 43 43 H 1.08997 * 110.41172 * 336.03293 * 13 11 10 44 44 H 1.09002 * 109.47401 * 49.99922 * 15 14 13 45 45 H 1.09001 * 109.46874 * 289.99935 * 15 14 13 46 46 H 0.96995 * 120.00011 * 0.02562 * 18 16 15 47 47 H 0.97000 * 119.99884 * 180.02562 * 22 21 19 48 48 H 1.09002 * 110.41148 * 79.29006 * 27 14 13 49 49 H 1.08997 * 110.41369 * 201.73410 * 27 14 13 50 50 H 0.96700 * 114.00160 * 179.97438 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 3.5649 1.4443 -0.1257 6 8 1.6620 2.0813 1.2212 7 6 1.4560 3.4903 1.1004 8 6 1.0639 4.0572 2.4405 9 8 0.9706 3.3268 3.4041 10 7 0.8170 5.3760 2.5681 11 6 0.4353 5.9271 3.8707 12 1 0.9621 5.4064 4.6705 13 6 -1.0912 5.8164 4.0733 14 7 -1.4651 7.0632 4.7895 15 6 -2.8955 7.3550 4.6264 16 6 -3.2889 8.4745 5.5555 17 8 -2.4590 8.9798 6.2816 18 7 -4.5625 8.9148 5.5787 19 6 -4.9202 9.9336 6.4236 20 1 -4.1815 10.3829 7.0707 21 6 -6.2332 10.3873 6.4479 22 7 -7.1322 9.8401 5.6608 23 14 -6.7205 11.7758 7.5985 24 1 -5.5329 12.2164 8.3734 25 1 -7.2448 12.9158 6.8044 26 1 -7.7715 11.2986 8.5329 27 6 -0.6311 8.1144 4.1520 28 6 0.7379 7.4388 3.9224 29 1 1.4133 7.6617 4.7485 30 8 1.3072 7.8736 2.6859 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.8532 0.9570 -1.0572 37 1 3.9282 2.4719 -0.1253 38 1 3.9995 0.9052 0.7160 39 1 0.6618 3.6807 0.3785 40 1 2.3769 3.9643 0.7610 41 1 0.8920 5.9602 1.7975 42 1 -1.3318 4.9430 4.6795 43 1 -1.5996 5.7638 3.1107 44 1 -3.4775 6.4644 4.8637 45 1 -3.0904 7.6525 3.5960 46 1 -5.2259 8.5110 4.9977 47 1 -8.0488 10.1571 5.6776 48 1 -1.0676 8.4214 3.2015 49 1 -0.5255 8.9712 4.8173 50 1 1.5179 8.8170 2.6601 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219476035.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:54 Heat of formation + Delta-G solvation = -187.950908 kcal Electronic energy + Delta-G solvation = -30176.672782 eV Core-core repulsion = 25816.989876 eV Total energy + Delta-G solvation = -4359.682906 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.40385 -40.41697 -39.60550 -38.88984 -36.89278 -35.91845 -35.28127 -34.71190 -33.29352 -31.77735 -30.77947 -29.61043 -28.64388 -27.59603 -25.94504 -24.52407 -22.83866 -22.11545 -21.94538 -21.48673 -21.00312 -19.89381 -18.71352 -18.32683 -17.91424 -17.80056 -17.01056 -16.85066 -16.61642 -16.46513 -16.27838 -15.81615 -15.62287 -15.45528 -15.04449 -14.96621 -14.77904 -14.52563 -14.20601 -14.11506 -14.08985 -13.72260 -13.64272 -13.44690 -13.24092 -12.98257 -12.92020 -12.60695 -12.55446 -12.52347 -12.40420 -12.24302 -12.11931 -12.05356 -11.90693 -11.49596 -11.45513 -11.05701 -10.88713 -10.57569 -10.38652 -10.15549 -10.01267 -9.47993 -8.46918 -5.95619 1.36386 1.41810 1.55305 1.56146 1.71606 2.04164 2.27867 2.64155 3.02965 3.15718 3.19357 3.32464 3.45883 3.71627 3.77381 3.94183 4.03767 4.07939 4.16490 4.20475 4.22672 4.25518 4.31924 4.33160 4.41721 4.45217 4.48544 4.62172 4.68922 4.73953 4.81667 4.84621 4.87758 4.95612 5.07100 5.11663 5.22787 5.31152 5.31757 5.41023 5.44668 5.73130 5.78055 6.03339 6.19686 6.57748 6.59822 6.76883 7.12613 7.25280 7.55634 8.11112 8.70773 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020877 B = 0.001828 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.837522 B =15316.633351 C =16214.586237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.077 3.923 4 H 0.082 0.918 5 C -0.174 4.174 6 O -0.388 6.388 7 C 0.048 3.952 8 C 0.508 3.492 9 O -0.572 6.572 10 N -0.695 5.695 11 C 0.156 3.844 12 H 0.090 0.910 13 C 0.027 3.973 14 N -0.502 5.502 15 C 0.048 3.952 16 C 0.444 3.556 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.331 4.331 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.273 1.273 27 C 0.009 3.991 28 C 0.115 3.885 29 H 0.084 0.916 30 O -0.561 6.561 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.422 0.578 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.105 0.895 45 H 0.075 0.925 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.059 0.941 49 H 0.074 0.926 50 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.292 -12.952 -19.139 29.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.020 3.980 4 H 0.100 0.900 5 C -0.232 4.232 6 O -0.307 6.307 7 C -0.031 4.031 8 C 0.295 3.705 9 O -0.450 6.450 10 N -0.350 5.350 11 C 0.049 3.951 12 H 0.108 0.892 13 C -0.102 4.102 14 N -0.227 5.227 15 C -0.083 4.083 16 C 0.231 3.769 17 O -0.499 6.499 18 N -0.212 5.212 19 C -0.460 4.460 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.120 4.120 28 C 0.054 3.946 29 H 0.102 0.898 30 O -0.370 6.370 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.261 0.739 42 H 0.098 0.902 43 H 0.080 0.920 44 H 0.123 0.877 45 H 0.093 0.907 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.092 0.908 50 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 18.592 -13.847 -17.418 28.997 hybrid contribution -1.097 1.518 -0.486 1.935 sum 17.495 -12.329 -17.905 27.904 Atomic orbital electron populations 1.21726 0.95711 1.01916 1.01563 1.21671 0.96352 0.94758 1.03055 1.22452 0.95108 0.94237 0.86202 0.89986 1.22299 0.95158 1.02783 1.02914 1.88041 1.89807 1.18835 1.34054 1.22304 1.03589 0.83664 0.93551 1.20982 0.76248 0.82163 0.91102 1.90725 1.52656 1.59707 1.41953 1.45533 1.69443 1.07706 1.12333 1.21534 0.94081 0.92533 0.86915 0.89176 1.23547 0.95409 0.93324 0.97909 1.64976 1.03251 1.02923 1.51576 1.21915 0.90618 0.97908 0.97897 1.20632 0.82548 0.86750 0.86951 1.90478 1.51213 1.61823 1.46407 1.41930 1.08843 1.32941 1.37521 1.19698 0.95095 1.12556 1.18692 0.90221 1.26043 0.94960 1.01115 0.99249 1.69683 1.03837 1.43406 1.39324 0.84861 0.78083 0.77528 0.77802 1.19751 1.19521 1.19795 1.23855 0.94150 0.95848 0.98136 1.22492 0.92681 0.91685 0.87728 0.89804 1.86184 1.83492 1.32561 1.34774 0.94310 0.91834 0.92175 0.88396 0.92563 0.89601 0.91971 0.93110 0.87662 0.87701 0.73886 0.90202 0.92025 0.87657 0.90707 0.77083 0.91338 0.92287 0.90785 0.74284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.81 71.98 0.71 -1.40 16 2 C -0.12 -1.52 5.64 30.59 0.17 -1.35 16 3 C 0.08 0.98 2.72 30.59 0.08 1.06 16 4 H 0.08 0.69 7.79 -2.39 -0.02 0.67 16 5 C -0.17 -1.79 9.53 71.98 0.69 -1.11 16 6 O -0.39 -7.87 9.06 -129.94 -1.18 -9.04 16 7 C 0.05 0.73 6.23 71.24 0.44 1.17 16 8 C 0.51 11.65 7.90 87.66 0.69 12.34 16 9 O -0.57 -19.17 16.20 16.03 0.26 -18.91 16 10 N -0.69 -13.33 4.90 -438.29 -2.15 -15.48 16 11 C 0.16 3.70 3.36 45.89 0.15 3.86 16 12 H 0.09 2.48 7.64 -2.38 -0.02 2.46 16 13 C 0.03 0.73 6.17 86.45 0.53 1.26 16 14 N -0.50 -16.37 4.98 -886.04 -4.41 -20.78 16 15 C 0.05 1.69 5.32 85.56 0.46 2.15 16 16 C 0.44 21.14 7.63 87.66 0.67 21.81 16 17 O -0.61 -33.66 14.80 -3.07 -0.05 -33.71 16 18 N -0.57 -29.52 5.29 -306.98 -1.62 -31.14 16 19 C -0.33 -18.77 9.68 84.04 0.81 -17.95 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.75 5.50 84.92 0.47 -0.29 16 22 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16 23 Si 0.99 42.90 29.55 68.60 2.03 44.92 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 C 0.01 0.24 5.67 86.45 0.49 0.73 16 28 C 0.11 2.41 4.42 31.49 0.14 2.55 16 29 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 30 O -0.56 -8.21 11.50 -148.98 -1.71 -9.92 16 31 H 0.04 0.74 7.82 -2.39 -0.02 0.72 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.57 7.87 -2.39 -0.02 0.55 16 38 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.11 1.00 8.08 -2.39 -0.02 0.98 16 40 H 0.11 1.00 7.87 -2.39 -0.02 0.98 16 41 H 0.42 6.04 7.18 -92.71 -0.67 5.37 16 42 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 43 H 0.06 1.49 7.91 -2.39 -0.02 1.48 16 44 H 0.11 3.39 8.08 -2.39 -0.02 3.38 16 45 H 0.08 2.29 7.77 -2.39 -0.02 2.27 16 46 H 0.40 19.34 7.90 -92.71 -0.73 18.60 16 47 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 48 H 0.06 1.54 7.69 -2.39 -0.02 1.52 16 49 H 0.07 2.51 7.24 -2.39 -0.02 2.50 16 50 H 0.41 3.06 9.12 -74.06 -0.68 2.38 16 Total: -1.00 -77.68 410.76 -3.14 -80.82 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -1.10 Total: 37.86 kcal Atomic # 6 Polarization: 18.33 SS G_CDS: 6.50 Total: 24.83 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -7.90 Total: -116.85 kcal Atomic # 8 Polarization: -68.91 SS G_CDS: -2.68 Total: -71.58 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -77.68 -3.14 -80.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219476035.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.130 kcal (2) G-P(sol) polarization free energy of solvation -77.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds