Wall clock time and date at job start Wed Apr 1 2020 01:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47033 * 2 1 4 4 H 1.09004 * 109.46758 * 54.99885 * 3 2 1 5 5 C 1.53001 * 109.47252 * 174.99889 * 3 2 1 6 6 O 1.42901 * 109.47040 * 294.99859 * 3 2 1 7 7 C 1.42897 * 113.99875 * 149.99735 * 6 3 2 8 8 C 1.50706 * 109.47088 * 179.97438 * 7 6 3 9 9 O 1.21276 * 119.99819 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99740 * 180.02562 * 8 7 6 11 11 C 1.46506 * 119.99877 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.27231 * 35.63377 * 11 10 8 13 13 C 1.53998 * 110.30756 * 273.54835 * 11 10 8 14 14 N 1.47900 * 107.05383 * 239.85889 * 13 11 10 15 15 C 1.46899 * 111.00124 * 145.84581 * 14 13 11 16 16 C 1.50700 * 109.47374 * 189.99910 * 15 14 13 17 17 O 1.21290 * 120.00025 * 359.97438 * 16 15 14 18 18 N 1.34780 * 120.00025 * 179.97438 * 16 15 14 19 19 C 1.37098 * 119.99727 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00095 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99644 * 179.97438 * 19 18 16 22 22 N 1.31411 * 119.99932 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99904 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47297 * 89.99601 * 23 21 19 25 25 H 1.48496 * 109.47276 * 210.00056 * 23 21 19 26 26 H 1.48507 * 109.47329 * 329.99947 * 23 21 19 27 27 C 1.48535 * 105.82483 * 25.32804 * 14 13 11 28 28 C 1.54595 * 110.30964 * 157.83075 * 11 10 8 29 29 H 1.09002 * 110.72117 * 215.31589 * 28 11 10 30 30 O 1.42899 * 110.72494 * 338.59961 * 28 11 10 31 31 H 1.08997 * 109.47603 * 59.99895 * 1 2 3 32 32 H 1.08995 * 109.47094 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47523 * 299.99788 * 1 2 3 34 34 H 1.09000 * 109.47068 * 240.00098 * 2 1 3 35 35 H 1.08994 * 109.47096 * 119.99541 * 2 1 3 36 36 H 1.08995 * 109.46967 * 299.99893 * 5 3 2 37 37 H 1.08998 * 109.46808 * 60.00154 * 5 3 2 38 38 H 1.08998 * 109.47081 * 179.97438 * 5 3 2 39 39 H 1.09001 * 109.47185 * 60.00042 * 7 6 3 40 40 H 1.08998 * 109.47396 * 300.00431 * 7 6 3 41 41 H 0.96996 * 120.00567 * 359.97438 * 10 8 7 42 42 H 1.09004 * 109.91416 * 359.20581 * 13 11 10 43 43 H 1.08999 * 109.91557 * 120.50386 * 13 11 10 44 44 H 1.09006 * 109.46790 * 309.99743 * 15 14 13 45 45 H 1.08997 * 109.47191 * 69.99533 * 15 14 13 46 46 H 0.96998 * 120.00087 * 359.97438 * 18 16 15 47 47 H 0.97006 * 119.99659 * 179.97438 * 22 21 19 48 48 H 1.08999 * 110.66524 * 79.22759 * 27 14 13 49 49 H 1.08992 * 110.66721 * 202.19189 * 27 14 13 50 50 H 0.96697 * 113.99969 * 180.02562 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 8 1.6619 2.0814 -1.2211 7 6 1.4558 3.4903 -1.1003 8 6 1.0637 4.0573 -2.4405 9 8 0.9696 3.3267 -3.4039 10 7 0.8177 5.3762 -2.5682 11 6 0.4361 5.9274 -3.8708 12 1 -0.1862 5.2162 -4.4142 13 6 1.6912 6.2759 -4.6922 14 7 1.6326 7.7255 -4.9799 15 6 2.9786 8.3136 -4.9972 16 6 2.8698 9.8159 -5.0468 17 8 1.7784 10.3446 -5.0664 18 7 3.9854 10.5719 -5.0694 19 6 3.8864 11.9386 -5.1151 20 1 2.9146 12.4093 -5.1334 21 6 5.0364 12.7180 -5.1379 22 7 6.2189 12.1452 -5.1152 23 14 4.9016 14.5801 -5.2009 24 1 4.8617 15.1205 -3.8183 25 1 6.0772 15.1376 -5.9166 26 1 3.6586 14.9625 -5.9178 27 6 0.8058 8.3199 -3.8986 28 6 -0.3120 7.2679 -3.6880 29 1 -1.0932 7.3793 -4.4399 30 8 -0.8579 7.3668 -2.3711 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8900 36 1 3.8531 0.9572 1.0571 37 1 3.9994 0.9054 -0.7161 38 1 3.9281 2.4721 0.1253 39 1 2.3767 3.9644 -0.7609 40 1 0.6617 3.6808 -0.3784 41 1 0.8926 5.9605 -1.7976 42 1 2.5875 6.0478 -4.1154 43 1 1.6930 5.7119 -5.6250 44 1 3.5159 8.0178 -4.0961 45 1 3.5187 7.9593 -5.8751 46 1 4.8582 10.1492 -5.0534 47 1 7.0218 12.6894 -5.1315 48 1 1.3935 8.4441 -2.9890 49 1 0.3849 9.2738 -4.2163 50 1 -1.3378 8.1897 -2.2051 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219476036.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:58 Heat of formation + Delta-G solvation = -184.808533 kcal Electronic energy + Delta-G solvation = -30462.152180 eV Core-core repulsion = 26102.605538 eV Total energy + Delta-G solvation = -4359.546642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47700 -40.49353 -39.57135 -38.85481 -36.89659 -35.96552 -35.19276 -34.72465 -33.33155 -31.77356 -30.79147 -29.57202 -28.66233 -27.63625 -25.92406 -24.53849 -22.72784 -22.21840 -21.95866 -21.42213 -21.07821 -19.88431 -18.65324 -18.35261 -17.97232 -17.77322 -17.13118 -16.73512 -16.69608 -16.42030 -16.28105 -15.86405 -15.75220 -15.42732 -15.01916 -14.93408 -14.73177 -14.50858 -14.23557 -14.06871 -13.93592 -13.76949 -13.65260 -13.48943 -13.27600 -12.99005 -12.95633 -12.76823 -12.56961 -12.52036 -12.41991 -12.25937 -12.13863 -11.93358 -11.90604 -11.48927 -11.46735 -11.00723 -10.88741 -10.59758 -10.26481 -10.19812 -10.02139 -9.40265 -8.47658 -5.96410 1.37385 1.42092 1.53492 1.54643 1.73759 2.01043 2.27175 2.63528 3.01136 3.11133 3.19097 3.31382 3.54670 3.68827 3.74579 3.92371 4.06226 4.09608 4.18128 4.19577 4.20833 4.25464 4.29719 4.35045 4.43979 4.45315 4.49994 4.66572 4.67538 4.72847 4.81611 4.85838 4.86605 5.06107 5.10856 5.13702 5.21877 5.29409 5.34552 5.40874 5.43963 5.74648 5.83743 6.03217 6.16544 6.52783 6.58046 6.76425 7.11032 7.19830 7.53143 8.07756 8.69645 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.017209 B = 0.001992 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.686476 B =14050.105647 C =14943.204503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.077 3.923 4 H 0.081 0.919 5 C -0.175 4.175 6 O -0.386 6.386 7 C 0.047 3.953 8 C 0.511 3.489 9 O -0.569 6.569 10 N -0.698 5.698 11 C 0.149 3.851 12 H 0.096 0.904 13 C 0.029 3.971 14 N -0.503 5.503 15 C 0.048 3.952 16 C 0.441 3.559 17 O -0.610 6.610 18 N -0.571 5.571 19 C -0.331 4.331 20 H 0.083 0.917 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.272 1.272 27 C 0.012 3.988 28 C 0.109 3.891 29 H 0.092 0.908 30 O -0.562 6.562 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.106 0.894 41 H 0.416 0.584 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.107 0.893 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.039 0.961 49 H 0.093 0.907 50 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.313 -19.385 14.107 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.020 3.980 4 H 0.099 0.901 5 C -0.233 4.233 6 O -0.305 6.305 7 C -0.032 4.032 8 C 0.298 3.702 9 O -0.448 6.448 10 N -0.352 5.352 11 C 0.043 3.957 12 H 0.114 0.886 13 C -0.100 4.100 14 N -0.229 5.229 15 C -0.083 4.083 16 C 0.229 3.771 17 O -0.497 6.497 18 N -0.208 5.208 19 C -0.461 4.461 20 H 0.101 0.899 21 C -0.214 4.214 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.198 1.198 26 H -0.197 1.197 27 C -0.116 4.116 28 C 0.048 3.952 29 H 0.110 0.890 30 O -0.369 6.369 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.254 0.746 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.085 0.915 45 H 0.125 0.875 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.057 0.943 49 H 0.111 0.889 50 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -8.882 -20.062 12.792 25.397 hybrid contribution 1.015 1.646 0.775 2.084 sum -7.867 -18.416 13.568 24.189 Atomic orbital electron populations 1.21719 0.95519 1.01989 1.01578 1.21666 0.96520 0.94507 1.03097 1.22456 0.94951 0.94403 0.86199 0.90079 1.22309 0.95378 1.02631 1.02972 1.88029 1.89772 1.18669 1.34044 1.22296 1.03365 0.83753 0.93817 1.20878 0.76332 0.82018 0.91001 1.90707 1.52520 1.59684 1.41857 1.45623 1.69522 1.07813 1.12250 1.21712 0.94825 0.94458 0.84701 0.88590 1.23423 0.97489 0.88726 1.00369 1.64555 1.11139 1.02697 1.44502 1.22003 0.91750 0.91270 1.03318 1.20546 0.84354 0.89650 0.82589 1.90417 1.27586 1.75130 1.56523 1.41920 1.07660 1.06431 1.64790 1.19676 0.94332 0.82299 1.49758 0.89938 1.26061 0.94052 1.04969 0.96288 1.69680 0.98026 1.38198 1.50243 0.84912 0.77939 0.76772 0.78631 1.19565 1.19795 1.19678 1.24023 0.95368 0.99800 0.92391 1.22826 0.94318 0.92089 0.85954 0.89045 1.86285 1.74732 1.45928 1.29998 0.94230 0.92001 0.91873 0.92472 0.88420 0.89570 0.93021 0.92315 0.88243 0.87647 0.74630 0.92707 0.89036 0.91467 0.87466 0.77114 0.91323 0.94284 0.88914 0.74650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.81 71.98 0.71 -1.34 16 2 C -0.12 -1.56 5.64 30.59 0.17 -1.39 16 3 C 0.08 1.07 2.72 30.60 0.08 1.15 16 4 H 0.08 0.79 7.79 -2.39 -0.02 0.78 16 5 C -0.18 -2.15 9.53 71.98 0.69 -1.47 16 6 O -0.39 -8.23 9.06 -129.94 -1.18 -9.41 16 7 C 0.05 0.79 6.23 71.24 0.44 1.23 16 8 C 0.51 12.28 7.90 87.66 0.69 12.97 16 9 O -0.57 -19.04 16.20 16.02 0.26 -18.78 16 10 N -0.70 -14.65 4.66 -438.36 -2.04 -16.69 16 11 C 0.15 3.58 3.26 45.87 0.15 3.72 16 12 H 0.10 2.47 7.64 -2.39 -0.02 2.45 16 13 C 0.03 0.77 6.49 86.45 0.56 1.33 16 14 N -0.50 -16.05 5.26 -887.57 -4.67 -20.72 16 15 C 0.05 1.66 5.52 85.56 0.47 2.14 16 16 C 0.44 20.29 7.49 87.66 0.66 20.94 16 17 O -0.61 -31.53 13.09 -3.06 -0.04 -31.57 16 18 N -0.57 -28.65 5.29 -306.99 -1.62 -30.27 16 19 C -0.33 -18.31 9.68 84.04 0.81 -17.50 16 20 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 22 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 23 Si 0.99 42.05 29.55 68.60 2.03 44.08 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 C 0.01 0.37 5.03 86.65 0.44 0.80 16 28 C 0.11 2.46 4.35 31.80 0.14 2.60 16 29 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 30 O -0.56 -10.23 12.05 -148.98 -1.80 -12.02 16 31 H 0.04 0.73 7.82 -2.39 -0.02 0.71 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.79 16 36 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.06 0.70 7.87 -2.39 -0.02 0.68 16 39 H 0.10 1.22 7.87 -2.39 -0.02 1.21 16 40 H 0.11 1.20 8.08 -2.39 -0.02 1.18 16 41 H 0.42 7.23 7.76 -92.71 -0.72 6.51 16 42 H 0.05 1.44 7.35 -2.38 -0.02 1.42 16 43 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.07 2.10 7.81 -2.38 -0.02 2.08 16 45 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 46 H 0.40 19.04 7.90 -92.71 -0.73 18.31 16 47 H 0.28 13.86 8.31 -92.70 -0.77 13.09 16 48 H 0.04 1.21 8.02 -2.39 -0.02 1.19 16 49 H 0.09 3.43 5.96 -2.39 -0.01 3.42 16 50 H 0.40 4.65 9.12 -74.06 -0.68 3.97 16 Total: -1.00 -73.19 408.40 -3.46 -76.65 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: -1.15 Total: 42.56 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 6.48 Total: 24.94 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -8.05 Total: -116.46 kcal Atomic # 8 Polarization: -69.02 SS G_CDS: -2.75 Total: -71.77 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -73.19 -3.46 -76.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219476036.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.159 kcal (2) G-P(sol) polarization free energy of solvation -73.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds