Wall clock time and date at job start Wed Apr 1 2020 02:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00214 * 2 1 4 4 H 1.09004 * 109.46876 * 330.00077 * 3 2 1 5 5 C 1.52995 * 109.47246 * 89.99760 * 3 2 1 6 6 C 1.53004 * 109.47413 * 209.99953 * 3 2 1 7 7 C 1.53003 * 109.46878 * 65.00020 * 6 3 2 8 8 C 1.50698 * 109.47178 * 180.02562 * 7 6 3 9 9 O 1.21280 * 119.99992 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00130 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99989 * 179.97438 * 10 8 7 12 12 H 1.08998 * 110.36884 * 32.81972 * 11 10 8 13 13 C 1.54377 * 110.32451 * 270.63549 * 11 10 8 14 14 N 1.48562 * 104.59385 * 217.24799 * 13 11 10 15 15 C 1.46899 * 110.99570 * 159.03985 * 14 13 11 16 16 C 1.50701 * 109.46761 * 174.70728 * 15 14 13 17 17 O 1.21291 * 120.00352 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99829 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99912 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00388 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00184 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00427 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99910 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46653 * 90.00252 * 23 21 19 25 25 H 1.48494 * 109.47194 * 210.00340 * 23 21 19 26 26 H 1.48497 * 109.47034 * 330.00545 * 23 21 19 27 27 C 1.48568 * 104.21841 * 39.48734 * 14 13 11 28 28 C 1.54259 * 110.32385 * 154.99651 * 11 10 8 29 29 H 1.08995 * 110.41781 * 237.84222 * 28 11 10 30 30 O 1.42903 * 110.32552 * 0.02562 * 28 11 10 31 31 H 1.09005 * 109.47207 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47227 * 300.00132 * 1 2 3 33 33 H 1.08996 * 109.47047 * 60.00176 * 1 2 3 34 34 H 1.08999 * 109.47435 * 180.02562 * 5 3 2 35 35 H 1.08994 * 109.47433 * 300.00478 * 5 3 2 36 36 H 1.09004 * 109.46924 * 60.00346 * 5 3 2 37 37 H 1.08993 * 109.47142 * 305.00146 * 6 3 2 38 38 H 1.09002 * 109.47201 * 184.99450 * 6 3 2 39 39 H 1.08997 * 109.47532 * 59.99486 * 7 6 3 40 40 H 1.09008 * 109.47140 * 299.99629 * 7 6 3 41 41 H 0.97002 * 120.00440 * 359.97438 * 10 8 7 42 42 H 1.09000 * 110.41059 * 98.47492 * 13 11 10 43 43 H 1.08997 * 110.51245 * 336.08255 * 13 11 10 44 44 H 1.08994 * 109.47553 * 294.70896 * 15 14 13 45 45 H 1.09004 * 109.47238 * 54.71022 * 15 14 13 46 46 H 0.97000 * 120.00203 * 0.02562 * 18 16 15 47 47 H 0.96999 * 120.00162 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.40652 * 201.73024 * 27 14 13 49 49 H 1.08998 * 110.41255 * 79.29378 * 27 14 13 50 50 H 0.96700 * 114.00311 * 177.08922 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2176 1.7713 1.4424 6 6 3.3589 1.2632 -0.7212 7 6 3.1383 0.9184 -2.1955 8 6 4.4667 0.8762 -2.9058 9 8 5.4892 1.1004 -2.2933 10 7 4.5185 0.5894 -4.2216 11 6 5.8099 0.5490 -4.9123 12 1 6.5902 0.1970 -4.2374 13 6 6.1674 1.9461 -5.4631 14 7 6.8266 1.6770 -6.7670 15 6 6.7833 2.8625 -7.6333 16 6 7.5714 2.5955 -8.8898 17 8 8.1153 1.5230 -9.0482 18 7 7.6710 3.5482 -9.8379 19 6 8.3875 3.3051 -10.9812 20 1 8.8718 2.3501 -11.1222 21 6 8.4907 4.2874 -11.9585 22 7 9.1771 4.0543 -13.0546 23 14 7.6525 5.9390 -11.7150 24 1 8.5849 6.8711 -11.0315 25 1 7.2713 6.5002 -13.0359 26 1 6.4353 5.7585 -10.8838 27 6 6.0382 0.5615 -7.3512 28 6 5.7250 -0.3619 -6.1543 29 1 6.4624 -1.1620 -6.0903 30 8 4.4105 -0.9082 -6.2803 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 2.6606 2.7673 1.4425 35 1 1.2569 1.8014 1.9563 36 1 2.8829 1.0774 1.9563 37 1 3.9931 0.5051 -0.2618 38 1 3.8427 2.2370 -0.6444 39 1 2.5040 1.6764 -2.6550 40 1 2.6545 -0.0554 -2.2724 41 1 3.7007 0.4097 -4.7115 42 1 6.8543 2.4565 -4.7880 43 1 5.2660 2.5414 -5.6085 44 1 5.7485 3.0846 -7.8938 45 1 7.2160 3.7133 -7.1069 46 1 7.2358 4.4058 -9.7115 47 1 9.2488 4.7399 -13.7370 48 1 6.6279 0.0295 -8.0978 49 1 5.1155 0.9384 -7.7923 50 1 4.2852 -1.4540 -7.0687 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219500256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:50 Heat of formation + Delta-G solvation = -187.542403 kcal Electronic energy + Delta-G solvation = -30103.951414 eV Core-core repulsion = 25744.286222 eV Total energy + Delta-G solvation = -4359.665192 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.39123 -40.46089 -39.58527 -39.07264 -36.89829 -35.96410 -35.23563 -34.66266 -33.76175 -31.92546 -30.90931 -29.11565 -28.19902 -27.49725 -26.03012 -25.16445 -22.75356 -22.20337 -21.63833 -21.32510 -21.24782 -20.21014 -18.64585 -18.08393 -17.79223 -17.77479 -17.08687 -16.78864 -16.52296 -16.36572 -16.27169 -15.93868 -15.86349 -15.57892 -15.13980 -15.05462 -14.81623 -14.49493 -14.23707 -14.21855 -14.06445 -13.92999 -13.60398 -13.37213 -13.22347 -13.14546 -13.01755 -12.57990 -12.54331 -12.42330 -12.41052 -12.20653 -12.03950 -12.01209 -11.98197 -11.51261 -11.49856 -11.06173 -10.90373 -10.49404 -10.45439 -10.24728 -10.09102 -9.48461 -8.41433 -6.02248 1.29464 1.35386 1.43829 1.66967 1.93993 2.02854 2.22570 2.65591 2.91927 3.05899 3.13928 3.24963 3.48071 3.70107 3.78886 3.84563 4.04058 4.13300 4.14368 4.18975 4.25359 4.29837 4.37727 4.40756 4.43857 4.54232 4.55806 4.62540 4.66049 4.73335 4.81737 4.85975 4.90351 4.93198 4.98972 5.01225 5.09505 5.24347 5.33931 5.41679 5.51234 5.74803 5.80457 5.96684 6.35901 6.58929 6.61677 6.74902 6.87835 7.31832 7.38968 7.95642 8.76038 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.001829 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.676304 B =15308.225198 C =15882.208383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.407 6.407 3 C 0.085 3.915 4 H 0.080 0.920 5 C -0.175 4.175 6 C -0.099 4.099 7 C -0.128 4.128 8 C 0.509 3.491 9 O -0.585 6.585 10 N -0.700 5.700 11 C 0.152 3.848 12 H 0.089 0.911 13 C 0.029 3.971 14 N -0.505 5.505 15 C 0.045 3.955 16 C 0.453 3.547 17 O -0.605 6.605 18 N -0.591 5.591 19 C -0.327 4.327 20 H 0.056 0.944 21 C -0.014 4.014 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.259 1.259 25 H -0.275 1.275 26 H -0.231 1.231 27 C 0.008 3.992 28 C 0.110 3.890 29 H 0.077 0.923 30 O -0.562 6.562 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.419 0.581 42 H 0.085 0.915 43 H 0.066 0.934 44 H 0.084 0.916 45 H 0.119 0.881 46 H 0.389 0.611 47 H 0.279 0.721 48 H 0.071 0.929 49 H 0.060 0.940 50 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.608 -2.392 25.341 34.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.028 3.972 4 H 0.098 0.902 5 C -0.232 4.232 6 C -0.137 4.137 7 C -0.167 4.167 8 C 0.297 3.703 9 O -0.466 6.466 10 N -0.353 5.353 11 C 0.045 3.955 12 H 0.107 0.893 13 C -0.099 4.099 14 N -0.231 5.231 15 C -0.087 4.087 16 C 0.241 3.759 17 O -0.489 6.489 18 N -0.233 5.233 19 C -0.456 4.456 20 H 0.074 0.926 21 C -0.213 4.213 22 N -0.574 5.574 23 Si 0.784 3.216 24 H -0.183 1.183 25 H -0.200 1.200 26 H -0.154 1.154 27 C -0.121 4.121 28 C 0.050 3.950 29 H 0.095 0.905 30 O -0.370 6.370 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.136 0.864 40 H 0.126 0.874 41 H 0.258 0.742 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.101 0.899 45 H 0.137 0.863 46 H 0.224 0.776 47 H 0.088 0.912 48 H 0.090 0.910 49 H 0.078 0.922 50 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -21.877 -2.900 26.066 34.153 hybrid contribution -0.794 0.788 -1.534 1.898 sum -22.670 -2.112 24.532 33.470 Atomic orbital electron populations 1.22938 0.79951 1.03495 1.00812 1.87917 1.21000 1.28581 1.95226 1.22216 0.94322 0.84701 0.95984 0.90161 1.22268 1.02515 1.01989 0.96449 1.21418 0.96118 1.02816 0.93337 1.21624 0.93470 1.05976 0.95667 1.21372 0.92263 0.74838 0.81812 1.90697 1.38004 1.50962 1.66894 1.45731 1.09701 1.70730 1.09145 1.21532 0.87358 0.94124 0.92453 0.89292 1.23546 0.98551 0.97083 0.90753 1.65001 1.49424 1.05655 1.02972 1.22020 0.99903 0.95004 0.91758 1.20741 0.84821 0.84612 0.85773 1.90529 1.51263 1.26759 1.80308 1.42016 1.48448 1.15535 1.17324 1.18992 1.29177 1.01916 0.95552 0.92576 1.26095 0.97661 1.03254 0.94295 1.69801 1.41729 1.36781 1.09134 0.85382 0.79844 0.77098 0.79303 1.18316 1.20002 1.15435 1.23854 0.96606 0.93834 0.97761 1.22542 0.85567 0.94542 0.92382 0.90484 1.86211 1.29433 1.70599 1.50802 0.89152 0.93510 0.92776 0.90615 0.91701 0.92902 0.92634 0.90095 0.86443 0.87444 0.74216 0.89641 0.91586 0.89850 0.86334 0.77563 0.91161 0.91024 0.92199 0.74538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.42 16 2 O -0.41 -5.80 9.88 -148.98 -1.47 -7.28 16 3 C 0.09 0.98 2.72 30.59 0.08 1.07 16 4 H 0.08 0.62 7.79 -2.39 -0.02 0.60 16 5 C -0.17 -1.88 9.53 71.98 0.69 -1.19 16 6 C -0.10 -1.48 4.21 30.60 0.13 -1.35 16 7 C -0.13 -1.68 5.60 29.85 0.17 -1.51 16 8 C 0.51 10.44 7.83 87.66 0.69 11.13 16 9 O -0.59 -17.05 15.63 -3.03 -0.05 -17.10 16 10 N -0.70 -12.87 4.85 -438.30 -2.13 -14.99 16 11 C 0.15 3.45 3.41 45.88 0.16 3.61 16 12 H 0.09 2.37 7.56 -2.39 -0.02 2.35 16 13 C 0.03 0.70 6.20 86.45 0.54 1.24 16 14 N -0.51 -15.26 5.06 -886.03 -4.49 -19.74 16 15 C 0.04 1.37 5.30 85.56 0.45 1.83 16 16 C 0.45 20.22 7.59 87.66 0.66 20.89 16 17 O -0.60 -32.89 14.42 -3.06 -0.04 -32.93 16 18 N -0.59 -27.59 5.09 -306.98 -1.56 -29.15 16 19 C -0.33 -19.02 10.16 84.04 0.85 -18.16 16 20 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 21 C -0.01 -0.79 5.50 84.93 0.47 -0.33 16 22 N -0.93 -56.00 13.96 21.66 0.30 -55.70 16 23 Si 0.96 38.40 27.74 68.60 1.90 40.30 16 24 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 26 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 27 C 0.01 0.22 5.53 86.45 0.48 0.70 16 28 C 0.11 2.36 4.43 31.49 0.14 2.50 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 O -0.56 -8.88 11.53 -148.98 -1.72 -10.59 16 31 H 0.09 0.60 8.14 -2.38 -0.02 0.59 16 32 H 0.05 0.30 7.87 -2.39 -0.02 0.29 16 33 H 0.05 0.30 8.08 -2.39 -0.02 0.28 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.58 7.87 -2.39 -0.02 0.56 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 39 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.11 1.30 7.82 -2.38 -0.02 1.28 16 41 H 0.42 6.11 7.26 -92.71 -0.67 5.44 16 42 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.07 1.35 7.91 -2.39 -0.02 1.33 16 44 H 0.08 2.09 7.88 -2.39 -0.02 2.07 16 45 H 0.12 3.09 8.13 -2.39 -0.02 3.07 16 46 H 0.39 15.00 5.76 -92.71 -0.53 14.47 16 47 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 48 H 0.07 2.50 6.91 -2.39 -0.02 2.48 16 49 H 0.06 1.51 7.76 -2.39 -0.02 1.49 16 50 H 0.40 3.72 9.11 -74.06 -0.67 3.05 16 Total: -1.00 -82.14 406.17 -3.50 -85.63 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -0.97 Total: 39.71 kcal Atomic # 6 Polarization: 15.11 SS G_CDS: 6.73 Total: 21.84 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -7.87 Total: -119.58 kcal Atomic # 8 Polarization: -64.62 SS G_CDS: -3.28 Total: -67.90 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 1.90 Total: 40.30 kcal Total: -82.14 -3.50 -85.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219500256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.909 kcal (2) G-P(sol) polarization free energy of solvation -82.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds