Wall clock time and date at job start Wed Apr 1 2020 02:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99639 * 2 1 4 4 H 1.08999 * 109.47092 * 30.00176 * 3 2 1 5 5 C 1.53000 * 109.47028 * 269.99919 * 3 2 1 6 6 C 1.53004 * 109.46964 * 150.00292 * 3 2 1 7 7 C 1.53003 * 109.46878 * 295.00107 * 6 3 2 8 8 C 1.50698 * 109.47178 * 180.02562 * 7 6 3 9 9 O 1.21280 * 119.99992 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00130 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99989 * 179.97438 * 10 8 7 12 12 H 1.08998 * 110.36884 * 32.81972 * 11 10 8 13 13 C 1.54377 * 110.32451 * 270.63549 * 11 10 8 14 14 N 1.48562 * 104.59385 * 217.24799 * 13 11 10 15 15 C 1.46899 * 110.99570 * 159.03985 * 14 13 11 16 16 C 1.50701 * 109.46761 * 174.70728 * 15 14 13 17 17 O 1.21291 * 120.00352 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99829 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99912 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00388 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00184 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99612 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00409 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47631 * 89.99513 * 23 21 19 25 25 H 1.48498 * 109.47552 * 209.99953 * 23 21 19 26 26 H 1.48508 * 109.46935 * 329.99627 * 23 21 19 27 27 C 1.48568 * 104.21841 * 39.48734 * 14 13 11 28 28 C 1.54259 * 110.32385 * 154.99651 * 11 10 8 29 29 H 1.08995 * 110.41781 * 237.84222 * 28 11 10 30 30 O 1.42903 * 110.32552 * 0.02562 * 28 11 10 31 31 H 1.09002 * 109.46777 * 299.99555 * 1 2 3 32 32 H 1.08994 * 109.46929 * 59.99706 * 1 2 3 33 33 H 1.09003 * 109.46395 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47394 * 300.00073 * 5 3 2 35 35 H 1.09001 * 109.46741 * 60.00699 * 5 3 2 36 36 H 1.09002 * 109.46899 * 180.02562 * 5 3 2 37 37 H 1.08993 * 109.47142 * 175.00233 * 6 3 2 38 38 H 1.09002 * 109.47201 * 54.99537 * 6 3 2 39 39 H 1.08997 * 109.47532 * 59.99486 * 7 6 3 40 40 H 1.09008 * 109.47140 * 299.99629 * 7 6 3 41 41 H 0.97002 * 120.00440 * 359.97438 * 10 8 7 42 42 H 1.09000 * 110.41059 * 98.47492 * 13 11 10 43 43 H 1.08997 * 110.51245 * 336.08255 * 13 11 10 44 44 H 1.08994 * 109.47553 * 294.70896 * 15 14 13 45 45 H 1.09004 * 109.47238 * 54.71022 * 15 14 13 46 46 H 0.97000 * 120.00203 * 0.02562 * 18 16 15 47 47 H 0.97003 * 119.99527 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.40652 * 201.73024 * 27 14 13 49 49 H 1.08998 * 110.41255 * 79.29378 * 27 14 13 50 50 H 0.96700 * 114.00311 * 177.08922 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3590 1.2634 0.7212 7 6 3.1384 0.9184 2.1954 8 6 4.4667 0.8775 2.9060 9 8 5.4892 1.1016 2.2935 10 7 4.5184 0.5918 4.2221 11 6 5.8098 0.5515 4.9127 12 1 6.4965 1.2765 4.4758 13 6 6.4120 -0.8682 4.8412 14 7 7.0650 -1.0648 6.1610 15 6 7.2487 -2.4933 6.4498 16 6 8.0274 -2.6508 7.7305 17 8 8.3928 -1.6695 8.3426 18 7 8.3167 -3.8820 8.1962 19 6 9.0246 -4.0252 9.3614 20 1 9.3500 -3.1515 9.9065 21 6 9.3234 -5.2946 9.8413 22 7 8.9270 -6.3577 9.1783 23 14 10.2873 -5.4898 11.4294 24 1 9.3456 -5.5489 12.5761 25 1 11.0812 -6.7436 11.3758 26 1 11.2016 -4.3319 11.5990 27 6 6.1256 -0.4424 7.1292 28 6 5.6215 0.8316 6.4179 29 1 6.2144 1.6944 6.7212 30 8 4.2405 1.0507 6.7130 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 2.8829 1.0776 -1.9564 35 1 1.2568 1.8015 -1.9562 36 1 2.6613 2.7670 -1.4425 37 1 3.8427 2.2371 0.6443 38 1 3.9932 0.5052 0.2617 39 1 2.6545 -0.0553 2.2724 40 1 2.5041 1.6766 2.6550 41 1 3.7006 0.4129 4.7121 42 1 7.1486 -0.9288 4.0400 43 1 5.6267 -1.6091 4.6914 44 1 6.2747 -2.9709 6.5558 45 1 7.7961 -2.9619 5.6319 46 1 8.0242 -4.6668 7.7068 47 1 9.1360 -7.2438 9.5132 48 1 6.6465 -0.1825 8.0508 49 1 5.2941 -1.1154 7.3384 50 1 4.0559 1.1878 7.6523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219500257.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:54 Heat of formation + Delta-G solvation = -163.131142 kcal Electronic energy + Delta-G solvation = -30069.111236 eV Core-core repulsion = 25710.504596 eV Total energy + Delta-G solvation = -4358.606640 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.34331 -39.19329 -38.55121 -37.82899 -35.81313 -34.35633 -34.00654 -33.80242 -31.32096 -30.94402 -29.92597 -28.02908 -27.10480 -26.53168 -24.80120 -24.08012 -21.62896 -21.46457 -20.72298 -20.40587 -19.19583 -17.90223 -17.74162 -17.29611 -17.09632 -16.12796 -16.06919 -15.74687 -15.40084 -15.29425 -15.14349 -14.90355 -14.64721 -14.29742 -13.96289 -13.75703 -13.67812 -13.43680 -13.26611 -12.93815 -12.87209 -12.85426 -12.57864 -12.11261 -12.06712 -11.86870 -11.69270 -11.54352 -11.47158 -11.38249 -11.32146 -11.08987 -10.95875 -10.86345 -10.40124 -10.23269 -10.11045 -10.06626 -9.87366 -9.50696 -9.13047 -8.57047 -8.08106 -7.96539 -6.42659 -3.83627 2.56409 2.94215 3.16767 3.25727 3.31636 3.39890 3.86103 3.89246 4.11317 4.30244 4.41314 4.49290 4.56751 4.60680 4.69089 4.86582 4.90544 4.95123 4.98405 5.07819 5.13661 5.16631 5.23394 5.24850 5.28139 5.33103 5.35477 5.44958 5.52110 5.65512 5.72066 5.76059 5.77581 5.84006 5.94620 5.97135 5.98822 6.21699 6.23647 6.35780 6.83065 6.96628 7.09606 7.41230 7.49083 7.54090 8.04645 8.17923 8.60317 9.16822 9.53018 10.04562 10.75065 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.001773 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.350004 B =15790.272726 C =16337.649452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.175 4.175 6 C -0.101 4.101 7 C -0.138 4.138 8 C 0.511 3.489 9 O -0.544 6.544 10 N -0.711 5.711 11 C 0.151 3.849 12 H 0.106 0.894 13 C 0.019 3.981 14 N -0.478 5.478 15 C 0.036 3.964 16 C 0.445 3.555 17 O -0.579 6.579 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.005 3.995 28 C 0.094 3.906 29 H 0.078 0.922 30 O -0.568 6.568 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.409 0.591 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.092 0.908 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.105 0.895 49 H 0.049 0.951 50 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.823 14.142 -15.682 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.303 6.303 3 C 0.025 3.975 4 H 0.079 0.921 5 C -0.232 4.232 6 C -0.138 4.138 7 C -0.178 4.178 8 C 0.298 3.702 9 O -0.421 6.421 10 N -0.364 5.364 11 C 0.045 3.955 12 H 0.124 0.876 13 C -0.110 4.110 14 N -0.203 5.203 15 C -0.096 4.096 16 C 0.230 3.770 17 O -0.463 6.463 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.205 1.205 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.123 4.123 28 C 0.034 3.966 29 H 0.096 0.904 30 O -0.374 6.374 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.107 0.893 41 H 0.246 0.754 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.110 0.890 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.124 0.876 49 H 0.068 0.932 50 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -17.214 14.763 -16.270 27.910 hybrid contribution -1.039 -1.100 1.338 2.020 sum -18.252 13.663 -14.932 27.254 Atomic orbital electron populations 1.22783 0.81305 1.02762 0.99809 1.87959 1.19416 1.27839 1.95070 1.22214 0.94898 0.84620 0.95720 0.92137 1.22269 1.02283 1.01926 0.96746 1.21462 0.95568 1.03843 0.92968 1.21624 0.95216 1.04614 0.96314 1.20757 0.91554 0.75904 0.81973 1.90707 1.36304 1.49201 1.65933 1.45818 1.09997 1.71396 1.09183 1.21718 0.85816 0.97795 0.90159 0.87646 1.23614 0.98020 0.95578 0.93775 1.65116 1.41111 1.13277 1.00776 1.22074 0.99775 0.88805 0.98958 1.19657 0.85740 0.84274 0.87316 1.90494 1.57356 1.38098 1.60359 1.41855 1.49201 1.05991 1.23011 1.19695 1.29970 0.93713 0.99485 0.87904 1.25267 0.98175 0.94876 0.99641 1.69617 1.46650 0.98307 1.39707 0.85852 0.79408 0.77827 0.81163 1.20461 1.20915 1.19403 1.23933 0.95126 0.94989 0.98260 1.22872 0.82247 0.97530 0.93999 0.90367 1.86243 1.25017 1.94818 1.31324 0.94041 0.94236 0.89665 0.91537 0.92571 0.91433 0.89811 0.90092 0.88291 0.89251 0.75425 0.89191 0.93318 0.93138 0.89012 0.77485 0.91865 0.87643 0.93233 0.76541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.24 9.88 -35.23 -0.35 -3.59 16 3 C 0.08 0.59 2.72 -26.73 -0.07 0.51 16 4 H 0.06 0.34 7.79 -51.93 -0.40 -0.06 16 5 C -0.17 -1.10 9.53 37.16 0.35 -0.75 16 6 C -0.10 -0.85 4.21 -26.73 -0.11 -0.96 16 7 C -0.14 -1.13 5.60 -27.88 -0.16 -1.28 16 8 C 0.51 5.91 7.83 -10.99 -0.09 5.82 16 9 O -0.54 -8.28 15.63 5.56 0.09 -8.19 16 10 N -0.71 -7.72 4.85 -52.47 -0.25 -7.97 16 11 C 0.15 1.91 3.41 -66.55 -0.23 1.68 16 12 H 0.11 1.46 7.56 -51.93 -0.39 1.06 16 13 C 0.02 0.27 6.20 -2.18 -0.01 0.26 16 14 N -0.48 -8.00 5.06 -231.41 -1.17 -9.17 16 15 C 0.04 0.64 5.30 -4.98 -0.03 0.62 16 16 C 0.44 10.45 7.59 -10.98 -0.08 10.37 16 17 O -0.58 -15.39 14.42 5.55 0.08 -15.31 16 18 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 23 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 27 C 0.01 0.08 5.53 -2.18 -0.01 0.07 16 28 C 0.09 1.10 4.43 -25.35 -0.11 0.99 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 30 O -0.57 -5.35 11.53 -35.23 -0.41 -5.76 16 31 H 0.04 0.19 8.09 -51.93 -0.42 -0.23 16 32 H 0.04 0.19 7.87 -51.93 -0.41 -0.22 16 33 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.10 0.77 7.82 -51.93 -0.41 0.37 16 40 H 0.09 0.56 8.14 -51.92 -0.42 0.13 16 41 H 0.41 3.87 7.26 -40.82 -0.30 3.57 16 42 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.05 0.66 7.91 -51.93 -0.41 0.25 16 44 H 0.05 0.83 7.88 -51.93 -0.41 0.42 16 45 H 0.09 1.54 8.13 -51.93 -0.42 1.12 16 46 H 0.39 9.52 7.90 -40.82 -0.32 9.20 16 47 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 48 H 0.11 1.83 6.91 -51.93 -0.36 1.48 16 49 H 0.05 0.72 7.76 -51.93 -0.40 0.32 16 50 H 0.39 2.33 9.11 45.56 0.41 2.75 16 LS Contribution 409.29 15.07 6.17 6.17 Total: -1.00 -33.90 409.29 -7.43 -41.33 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -7.54 Total: 13.99 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 0.31 Total: 10.64 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.76 Total: -55.24 kcal Atomic # 8 Polarization: -32.26 SS G_CDS: -0.59 Total: -32.85 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.90 -7.43 -41.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219500257.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.799 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds