Wall clock time and date at job start Wed Apr 1 2020 02:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99639 * 2 1 4 4 H 1.08999 * 109.47092 * 30.00176 * 3 2 1 5 5 C 1.53000 * 109.47028 * 269.99919 * 3 2 1 6 6 C 1.53004 * 109.46964 * 150.00292 * 3 2 1 7 7 C 1.53003 * 109.46878 * 295.00107 * 6 3 2 8 8 C 1.50698 * 109.47178 * 180.02562 * 7 6 3 9 9 O 1.21280 * 119.99992 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00130 * 179.97438 * 8 7 6 11 11 C 1.46506 * 119.99989 * 179.97438 * 10 8 7 12 12 H 1.08998 * 110.36884 * 32.81972 * 11 10 8 13 13 C 1.54377 * 110.32451 * 270.63549 * 11 10 8 14 14 N 1.48562 * 104.59385 * 217.24799 * 13 11 10 15 15 C 1.46899 * 110.99570 * 159.03985 * 14 13 11 16 16 C 1.50701 * 109.46761 * 174.70728 * 15 14 13 17 17 O 1.21291 * 120.00352 * 0.02562 * 16 15 14 18 18 N 1.34778 * 119.99829 * 179.97438 * 16 15 14 19 19 C 1.37093 * 119.99912 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00388 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00184 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99612 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00409 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47631 * 89.99513 * 23 21 19 25 25 H 1.48498 * 109.47552 * 209.99953 * 23 21 19 26 26 H 1.48508 * 109.46935 * 329.99627 * 23 21 19 27 27 C 1.48568 * 104.21841 * 39.48734 * 14 13 11 28 28 C 1.54259 * 110.32385 * 154.99651 * 11 10 8 29 29 H 1.08995 * 110.41781 * 237.84222 * 28 11 10 30 30 O 1.42903 * 110.32552 * 0.02562 * 28 11 10 31 31 H 1.09002 * 109.46777 * 299.99555 * 1 2 3 32 32 H 1.08994 * 109.46929 * 59.99706 * 1 2 3 33 33 H 1.09003 * 109.46395 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47394 * 300.00073 * 5 3 2 35 35 H 1.09001 * 109.46741 * 60.00699 * 5 3 2 36 36 H 1.09002 * 109.46899 * 180.02562 * 5 3 2 37 37 H 1.08993 * 109.47142 * 175.00233 * 6 3 2 38 38 H 1.09002 * 109.47201 * 54.99537 * 6 3 2 39 39 H 1.08997 * 109.47532 * 59.99486 * 7 6 3 40 40 H 1.09008 * 109.47140 * 299.99629 * 7 6 3 41 41 H 0.97002 * 120.00440 * 359.97438 * 10 8 7 42 42 H 1.09000 * 110.41059 * 98.47492 * 13 11 10 43 43 H 1.08997 * 110.51245 * 336.08255 * 13 11 10 44 44 H 1.08994 * 109.47553 * 294.70896 * 15 14 13 45 45 H 1.09004 * 109.47238 * 54.71022 * 15 14 13 46 46 H 0.97000 * 120.00203 * 0.02562 * 18 16 15 47 47 H 0.97003 * 119.99527 * 179.97438 * 22 21 19 48 48 H 1.09002 * 110.40652 * 201.73024 * 27 14 13 49 49 H 1.08998 * 110.41255 * 79.29378 * 27 14 13 50 50 H 0.96700 * 114.00311 * 177.08922 * 30 28 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2176 1.7714 -1.4425 6 6 3.3590 1.2634 0.7212 7 6 3.1384 0.9184 2.1954 8 6 4.4667 0.8775 2.9060 9 8 5.4892 1.1016 2.2935 10 7 4.5184 0.5918 4.2221 11 6 5.8098 0.5515 4.9127 12 1 6.4965 1.2765 4.4758 13 6 6.4120 -0.8682 4.8412 14 7 7.0650 -1.0648 6.1610 15 6 7.2487 -2.4933 6.4498 16 6 8.0274 -2.6508 7.7305 17 8 8.3928 -1.6695 8.3426 18 7 8.3167 -3.8820 8.1962 19 6 9.0246 -4.0252 9.3614 20 1 9.3500 -3.1515 9.9065 21 6 9.3234 -5.2946 9.8413 22 7 8.9270 -6.3577 9.1783 23 14 10.2873 -5.4898 11.4294 24 1 9.3456 -5.5489 12.5761 25 1 11.0812 -6.7436 11.3758 26 1 11.2016 -4.3319 11.5990 27 6 6.1256 -0.4424 7.1292 28 6 5.6215 0.8316 6.4179 29 1 6.2144 1.6944 6.7212 30 8 4.2405 1.0507 6.7130 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3632 -1.0277 -0.0005 34 1 2.8829 1.0776 -1.9564 35 1 1.2568 1.8015 -1.9562 36 1 2.6613 2.7670 -1.4425 37 1 3.8427 2.2371 0.6443 38 1 3.9932 0.5052 0.2617 39 1 2.6545 -0.0553 2.2724 40 1 2.5041 1.6766 2.6550 41 1 3.7006 0.4129 4.7121 42 1 7.1486 -0.9288 4.0400 43 1 5.6267 -1.6091 4.6914 44 1 6.2747 -2.9709 6.5558 45 1 7.7961 -2.9619 5.6319 46 1 8.0242 -4.6668 7.7068 47 1 9.1360 -7.2438 9.5132 48 1 6.6465 -0.1825 8.0508 49 1 5.2941 -1.1154 7.3384 50 1 4.0559 1.1878 7.6523 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219500257.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:53 Heat of formation + Delta-G solvation = -192.460887 kcal Electronic energy + Delta-G solvation = -30070.383069 eV Core-core repulsion = 25710.504596 eV Total energy + Delta-G solvation = -4359.878473 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37924 -40.38782 -39.52882 -39.06055 -36.88336 -35.92574 -35.22913 -34.66402 -33.30101 -31.88413 -30.87778 -29.11933 -28.09083 -27.49492 -26.17048 -25.20586 -22.80389 -22.20288 -21.63840 -21.32609 -20.99831 -19.88964 -18.64590 -18.08434 -17.81227 -17.75662 -17.07044 -16.63690 -16.57162 -16.31523 -16.13132 -15.99670 -15.90670 -15.77138 -15.22178 -15.06098 -14.83478 -14.34169 -14.20904 -14.10954 -13.94201 -13.68420 -13.44182 -13.35233 -13.21998 -13.15323 -12.96632 -12.57908 -12.54299 -12.42806 -12.41540 -12.20575 -12.13035 -12.03637 -12.00419 -11.51206 -11.48662 -11.05557 -10.90780 -10.49420 -10.37625 -10.09621 -10.01867 -9.48756 -8.47031 -5.95856 1.37673 1.41740 1.54491 1.66499 2.02098 2.04037 2.29081 2.78138 2.92418 3.12931 3.19103 3.30959 3.48398 3.73922 3.79701 3.84416 4.04228 4.13837 4.17676 4.24178 4.25511 4.33797 4.38228 4.41794 4.48192 4.53674 4.55477 4.62522 4.65915 4.72657 4.81625 4.84642 4.90993 4.93073 4.98877 5.01225 5.08818 5.24257 5.33945 5.40173 5.41965 5.72628 5.78631 6.02754 6.36093 6.59179 6.61306 6.76095 7.11948 7.31334 7.54813 8.10056 8.70411 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.001773 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.350004 B =15790.272726 C =16337.649452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.085 3.915 4 H 0.081 0.919 5 C -0.174 4.174 6 C -0.099 4.099 7 C -0.128 4.128 8 C 0.508 3.492 9 O -0.585 6.585 10 N -0.700 5.700 11 C 0.153 3.847 12 H 0.093 0.907 13 C 0.026 3.974 14 N -0.501 5.501 15 C 0.048 3.952 16 C 0.444 3.556 17 O -0.613 6.613 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.994 3.006 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.008 3.992 28 C 0.113 3.887 29 H 0.083 0.917 30 O -0.562 6.562 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.055 0.945 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.419 0.581 42 H 0.082 0.918 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.395 0.605 47 H 0.277 0.723 48 H 0.076 0.924 49 H 0.054 0.946 50 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.846 14.531 -15.765 29.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.028 3.972 4 H 0.099 0.901 5 C -0.232 4.232 6 C -0.137 4.137 7 C -0.167 4.167 8 C 0.297 3.703 9 O -0.465 6.465 10 N -0.353 5.353 11 C 0.047 3.953 12 H 0.111 0.889 13 C -0.103 4.103 14 N -0.226 5.226 15 C -0.084 4.084 16 C 0.231 3.769 17 O -0.499 6.499 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.098 0.902 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.195 1.195 25 H -0.197 1.197 26 H -0.198 1.198 27 C -0.120 4.120 28 C 0.052 3.948 29 H 0.100 0.900 30 O -0.370 6.370 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.258 0.742 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.124 0.876 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.073 0.927 50 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -19.290 15.145 -16.348 29.474 hybrid contribution -0.449 -1.188 1.342 1.848 sum -19.739 13.957 -15.006 28.454 Atomic orbital electron populations 1.22941 0.79945 1.03466 1.00842 1.87926 1.21017 1.28617 1.95230 1.22220 0.94295 0.84693 0.96007 0.90099 1.22269 1.02517 1.01999 0.96413 1.21420 0.96162 1.02812 0.93303 1.21624 0.93448 1.05968 0.95687 1.21384 0.92278 0.74764 0.81888 1.90695 1.38028 1.51070 1.66757 1.45737 1.09646 1.70876 1.09076 1.21530 0.86470 0.96504 0.90827 0.88925 1.23560 0.97959 0.96773 0.91967 1.65022 1.42817 1.12320 1.02427 1.21924 0.99990 0.90352 0.96122 1.20595 0.84806 0.83140 0.88388 1.90470 1.58531 1.39064 1.61846 1.41920 1.49598 1.06794 1.22791 1.19668 1.31947 0.93611 1.00962 0.90162 1.26054 0.98576 0.94159 1.02543 1.69679 1.46947 0.98696 1.40871 0.84912 0.78094 0.77818 0.77414 1.19510 1.19672 1.19800 1.23862 0.94532 0.96499 0.97129 1.22540 0.83444 0.95997 0.92819 0.89950 1.86210 1.23148 1.94554 1.33124 0.92732 0.93442 0.89247 0.92961 0.91663 0.90553 0.90070 0.92656 0.87472 0.86433 0.74239 0.89956 0.92303 0.90998 0.87554 0.77090 0.91320 0.90607 0.92744 0.74496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.82 113.37 1.23 1.45 16 2 O -0.41 -6.25 9.88 -148.98 -1.47 -7.72 16 3 C 0.09 1.06 2.72 30.60 0.08 1.14 16 4 H 0.08 0.68 7.79 -2.39 -0.02 0.66 16 5 C -0.17 -1.99 9.53 71.98 0.69 -1.31 16 6 C -0.10 -1.58 4.21 30.60 0.13 -1.45 16 7 C -0.13 -1.82 5.60 29.85 0.17 -1.65 16 8 C 0.51 11.09 7.83 87.66 0.69 11.78 16 9 O -0.59 -17.76 15.63 -3.03 -0.05 -17.81 16 10 N -0.70 -13.88 4.85 -438.30 -2.13 -16.01 16 11 C 0.15 3.70 3.41 45.88 0.16 3.86 16 12 H 0.09 2.53 7.56 -2.39 -0.02 2.51 16 13 C 0.03 0.71 6.20 86.45 0.54 1.25 16 14 N -0.50 -16.53 5.06 -886.03 -4.49 -21.01 16 15 C 0.05 1.69 5.30 85.56 0.45 2.15 16 16 C 0.44 21.16 7.59 87.66 0.66 21.82 16 17 O -0.61 -33.50 14.42 -3.06 -0.04 -33.54 16 18 N -0.57 -29.53 5.29 -306.98 -1.62 -31.15 16 19 C -0.33 -18.85 9.68 84.04 0.81 -18.03 16 20 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 22 N -0.92 -49.80 13.05 21.66 0.28 -49.52 16 23 Si 0.99 42.87 29.55 68.60 2.03 44.89 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 C 0.01 0.24 5.53 86.45 0.48 0.72 16 28 C 0.11 2.49 4.43 31.49 0.14 2.63 16 29 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 30 O -0.56 -9.10 11.53 -148.98 -1.72 -10.82 16 31 H 0.05 0.35 8.09 -2.39 -0.02 0.33 16 32 H 0.05 0.35 7.87 -2.39 -0.02 0.33 16 33 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.62 7.87 -2.39 -0.02 0.60 16 36 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 1.32 8.10 -2.39 -0.02 1.30 16 38 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 39 H 0.11 1.41 7.82 -2.39 -0.02 1.39 16 40 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.42 6.73 7.26 -92.71 -0.67 6.05 16 42 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.06 1.48 7.91 -2.39 -0.02 1.46 16 44 H 0.07 2.26 7.88 -2.39 -0.02 2.24 16 45 H 0.11 3.47 8.13 -2.39 -0.02 3.45 16 46 H 0.40 19.43 7.90 -92.71 -0.73 18.69 16 47 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 48 H 0.08 2.69 6.91 -2.39 -0.02 2.67 16 49 H 0.05 1.52 7.76 -2.39 -0.02 1.50 16 50 H 0.40 3.76 9.11 -74.06 -0.67 3.09 16 Total: -1.00 -74.34 409.29 -3.63 -77.98 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -1.11 Total: 40.63 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 6.69 Total: 24.08 kcal Atomic # 7 Polarization: -109.74 SS G_CDS: -7.95 Total: -117.70 kcal Atomic # 8 Polarization: -66.61 SS G_CDS: -3.28 Total: -69.89 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -74.34 -3.63 -77.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219500257.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.485 kcal (2) G-P(sol) polarization free energy of solvation -74.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds