Wall clock time and date at job start Wed Apr 1 2020 02:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42891 * 114.00408 * 2 1 4 4 C 1.53002 * 109.47522 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.46665 * 64.99902 * 4 3 2 6 6 C 1.42904 * 113.99903 * 180.02562 * 5 4 3 7 7 C 1.50696 * 109.47111 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00098 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99810 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99826 * 179.97438 * 9 7 6 11 11 C 1.53119 * 109.51978 * 204.99618 * 10 9 7 12 12 C 1.53039 * 109.27478 * 182.37658 * 11 10 9 13 13 N 1.46852 * 109.52336 * 59.18093 * 12 11 10 14 14 C 1.46900 * 111.00118 * 174.15791 * 13 12 11 15 15 C 1.50697 * 109.47237 * 293.61170 * 14 13 12 16 16 O 1.21294 * 119.99957 * 353.73088 * 15 14 13 17 17 N 1.34777 * 120.00218 * 173.72893 * 15 14 13 18 18 C 1.37099 * 120.00043 * 179.97438 * 17 15 14 19 19 H 1.07997 * 119.99929 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99738 * 180.02562 * 18 17 15 21 21 N 1.31412 * 120.00132 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99888 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47241 * 90.00085 * 22 20 18 24 24 H 1.48497 * 109.47231 * 210.00154 * 22 20 18 25 25 H 1.48508 * 109.47072 * 330.00134 * 22 20 18 26 26 C 1.46845 * 111.19897 * 298.25829 * 13 12 11 27 27 C 1.53038 * 109.52423 * 61.74130 * 26 13 12 28 28 H 1.08997 * 109.47402 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46944 * 300.00162 * 1 2 3 30 30 H 1.08995 * 109.47165 * 59.99807 * 1 2 3 31 31 H 1.09003 * 109.47132 * 60.00240 * 3 2 1 32 32 H 1.08999 * 109.47570 * 300.00299 * 3 2 1 33 33 H 1.09008 * 109.47098 * 305.00400 * 4 3 2 34 34 H 1.08991 * 109.47748 * 184.99999 * 4 3 2 35 35 H 1.09000 * 109.47347 * 59.99646 * 6 5 4 36 36 H 1.09009 * 109.46845 * 299.99879 * 6 5 4 37 37 H 0.97000 * 120.00090 * 359.97438 * 9 7 6 38 38 H 1.08994 * 109.52080 * 325.12579 * 10 9 7 39 39 H 1.08998 * 109.50519 * 62.44346 * 11 10 9 40 40 H 1.08998 * 109.50523 * 302.31571 * 11 10 9 41 41 H 1.08994 * 109.46299 * 299.16822 * 12 11 10 42 42 H 1.09003 * 109.45395 * 179.18930 * 12 11 10 43 43 H 1.08996 * 109.46919 * 173.61386 * 14 13 12 44 44 H 1.08994 * 109.47139 * 53.61230 * 14 13 12 45 45 H 0.97002 * 119.99804 * 0.02562 * 17 15 14 46 46 H 0.96995 * 120.00108 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.46555 * 181.75400 * 26 13 12 48 48 H 1.09004 * 109.46392 * 301.72721 * 26 13 12 49 49 H 1.08998 * 109.50374 * 180.88473 * 27 26 13 50 50 H 1.09001 * 109.50604 * 60.76106 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9658 0.5790 -1.2202 6 6 5.3821 0.4184 -1.3217 7 6 5.7214 -0.2253 -2.6413 8 8 4.8374 -0.5182 -3.4182 9 7 7.0072 -0.4765 -2.9577 10 6 7.3370 -1.1028 -4.2404 11 6 8.6788 -1.8312 -4.1241 12 6 9.0464 -2.4329 -5.4824 13 7 9.1347 -1.3637 -6.4851 14 6 9.6204 -1.8854 -7.7696 15 6 11.0479 -2.3437 -7.6182 16 8 11.6427 -2.1423 -6.5805 17 7 11.6638 -2.9774 -8.6358 18 6 12.9628 -3.3938 -8.4982 19 1 13.4923 -3.2145 -7.5743 20 6 13.5979 -4.0467 -9.5476 21 7 12.9536 -4.2645 -10.6721 22 14 15.3674 -4.6148 -9.3599 23 1 15.3888 -5.9962 -8.8154 24 1 16.0370 -4.5948 -10.6853 25 1 16.0834 -3.7049 -8.4299 26 6 7.8449 -0.6809 -6.6483 27 6 7.4415 -0.0268 -5.3248 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8464 -0.8899 33 1 3.8508 0.5683 0.8427 34 1 3.9786 2.1763 0.0902 35 1 5.7354 -0.2138 -0.5070 36 1 5.8638 1.3943 -1.2594 37 1 7.7142 -0.2426 -2.3362 38 1 6.5575 -1.8159 -4.5086 39 1 8.5981 -2.6268 -3.3835 40 1 9.4508 -1.1252 -3.8180 41 1 8.2810 -3.1489 -5.7815 42 1 10.0083 -2.9399 -5.4065 43 1 9.5690 -1.0999 -8.5235 44 1 8.9996 -2.7264 -8.0783 45 1 11.1883 -3.1382 -9.4659 46 1 13.3971 -4.7199 -11.4047 47 1 7.9341 0.0845 -7.4192 48 1 7.0850 -1.4052 -6.9419 49 1 6.4766 0.4666 -5.4420 50 1 8.1940 0.7076 -5.0375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226648946.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:47 Heat of formation + Delta-G solvation = -155.715718 kcal Electronic energy + Delta-G solvation = -29516.921745 eV Core-core repulsion = 25158.636662 eV Total energy + Delta-G solvation = -4358.285083 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.23851 -39.09073 -38.56228 -37.65626 -37.14220 -34.95392 -33.83301 -31.96608 -31.20349 -30.90433 -30.71530 -28.22873 -26.83285 -26.46654 -24.46509 -23.14976 -23.00884 -22.57710 -20.68065 -19.87684 -19.14694 -17.84193 -17.57660 -17.38794 -17.26056 -16.36418 -16.18245 -15.91961 -15.62932 -15.53555 -15.14050 -14.92645 -14.69088 -14.53299 -14.16538 -13.86383 -13.81735 -13.46380 -13.33672 -13.01566 -12.97369 -12.78113 -12.45668 -12.26504 -11.86798 -11.84385 -11.59769 -11.51832 -11.43766 -11.22898 -11.08423 -11.02602 -10.75843 -10.41385 -10.37206 -10.20279 -10.15511 -10.08696 -9.87169 -9.45798 -9.15129 -8.41534 -7.95314 -7.82983 -6.39970 -3.80719 2.44707 2.53524 3.18651 3.27303 3.33007 3.33858 3.61039 3.93459 4.00863 4.25925 4.41409 4.56943 4.68543 4.72025 4.78126 4.81583 4.85314 4.88422 4.91827 4.98748 5.03768 5.09935 5.15636 5.24873 5.27072 5.31135 5.33912 5.49226 5.53530 5.68026 5.72740 5.83775 5.89561 6.03388 6.03687 6.14889 6.24080 6.32569 6.40988 6.43545 6.60488 6.75930 7.28751 7.35012 7.44062 7.56663 8.06847 8.08438 8.64081 9.20030 9.56983 10.08856 10.77834 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.038379 B = 0.001481 C = 0.001464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.396871 B =18901.676887 C =19123.670469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.355 6.355 6 C 0.043 3.957 7 C 0.513 3.487 8 O -0.518 6.518 9 N -0.724 5.724 10 C 0.145 3.855 11 C -0.118 4.118 12 C 0.059 3.941 13 N -0.515 5.515 14 C 0.046 3.954 15 C 0.444 3.556 16 O -0.577 6.577 17 N -0.565 5.565 18 C -0.299 4.299 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.270 1.270 26 C 0.058 3.942 27 C -0.122 4.122 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.400 0.600 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.026 0.974 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.047 0.953 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.077 0.923 48 H 0.032 0.968 49 H 0.068 0.932 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.047 11.322 19.785 30.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.302 6.302 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.273 6.273 6 C -0.037 4.037 7 C 0.297 3.703 8 O -0.392 6.392 9 N -0.377 5.377 10 C 0.041 3.959 11 C -0.156 4.156 12 C -0.070 4.070 13 N -0.240 5.240 14 C -0.085 4.085 15 C 0.229 3.771 16 O -0.461 6.461 17 N -0.202 5.202 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.194 1.194 26 C -0.071 4.071 27 C -0.161 4.161 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.234 0.766 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.044 0.956 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.065 0.935 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.050 0.950 49 H 0.087 0.913 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.928 11.266 19.764 30.243 hybrid contribution 0.328 -0.499 -0.339 0.686 sum -19.600 10.768 19.425 29.621 Atomic orbital electron populations 1.22753 0.80936 1.02996 0.99848 1.87976 1.19717 1.27118 1.95361 1.22538 0.92094 0.85736 1.01004 1.22606 0.93795 0.97603 0.87540 1.88095 1.19405 1.82049 1.37742 1.22215 0.84279 1.00868 0.96311 1.20212 0.82910 0.79151 0.87979 1.90744 1.46899 1.50539 1.51037 1.46003 1.07258 1.63569 1.20821 1.21125 0.97721 0.94731 0.82304 1.21827 0.95521 1.00218 0.98053 1.22115 1.02353 0.92095 0.90388 1.61525 1.25880 1.29023 1.07591 1.21845 0.95798 0.99350 0.91536 1.19758 0.87961 0.83873 0.85496 1.90494 1.66818 1.60060 1.28762 1.41885 1.13157 1.50691 1.14468 1.19694 0.88133 1.33622 1.01383 0.87930 1.25251 1.00242 0.97482 0.94951 1.69612 1.37923 1.42531 1.04274 0.85869 0.81912 0.79049 0.77516 1.20465 1.20958 1.19433 1.22054 0.89836 0.97979 0.97240 1.21933 1.01561 0.98278 0.94359 0.89494 0.94223 0.93898 0.91667 0.92183 0.92136 0.91475 0.90206 0.90283 0.76556 0.89714 0.91194 0.90178 0.95613 0.87930 0.89244 0.93519 0.77507 0.91905 0.90468 0.94973 0.91294 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.79 10.67 -40.09 -0.43 -4.22 16 3 C 0.06 0.45 6.32 37.16 0.23 0.68 16 4 C 0.06 0.42 6.32 37.16 0.23 0.66 16 5 O -0.35 -3.89 9.84 -59.73 -0.59 -4.47 16 6 C 0.04 0.35 6.42 36.00 0.23 0.58 16 7 C 0.51 5.95 7.88 -10.99 -0.09 5.86 16 8 O -0.52 -8.55 16.16 -14.35 -0.23 -8.78 16 9 N -0.72 -6.99 5.08 -53.68 -0.27 -7.26 16 10 C 0.15 1.73 2.52 -67.80 -0.17 1.56 16 11 C -0.12 -1.47 5.57 -26.65 -0.15 -1.62 16 12 C 0.06 0.93 5.12 -3.83 -0.02 0.91 16 13 N -0.52 -8.51 4.35 -236.12 -1.03 -9.54 16 14 C 0.05 0.82 5.45 -4.98 -0.03 0.80 16 15 C 0.44 10.36 7.31 -10.99 -0.08 10.28 16 16 O -0.58 -15.25 14.29 5.55 0.08 -15.17 16 17 N -0.57 -14.25 5.29 -10.96 -0.06 -14.30 16 18 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 19 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.53 13.05 55.50 0.72 -23.81 16 22 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 26 C 0.06 0.78 5.46 -3.83 -0.02 0.76 16 27 C -0.12 -1.51 5.68 -26.65 -0.15 -1.66 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.18 8.14 -51.92 -0.42 -0.24 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 34 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 37 H 0.40 2.65 8.61 -40.82 -0.35 2.29 16 38 H 0.08 1.17 7.58 -51.93 -0.39 0.78 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.10 1.96 6.06 -51.93 -0.31 1.64 16 43 H 0.09 1.46 7.98 -51.93 -0.41 1.04 16 44 H 0.05 0.78 8.12 -51.93 -0.42 0.35 16 45 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 46 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.08 0.98 8.01 -51.93 -0.42 0.56 16 48 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 411.65 15.07 6.20 6.20 Total: -1.00 -36.02 411.65 -8.24 -44.26 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -8.49 Total: 8.94 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 0.87 Total: 12.20 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.63 Total: -54.91 kcal Atomic # 8 Polarization: -31.48 SS G_CDS: -1.17 Total: -32.65 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.02 -8.24 -44.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226648946.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.460 kcal (2) G-P(sol) polarization free energy of solvation -36.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds