Wall clock time and date at job start Wed Apr 1 2020 02:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00000 * 2 1 4 4 C 1.52996 * 109.47007 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47052 * 304.99361 * 4 3 2 6 6 O 1.42899 * 109.47392 * 64.99716 * 4 3 2 7 7 C 1.42896 * 113.99952 * 269.99949 * 6 4 3 8 8 C 1.50706 * 109.46892 * 185.00014 * 4 3 2 9 9 O 1.21281 * 119.99699 * 244.99452 * 8 4 3 10 10 N 1.34773 * 120.00080 * 64.99942 * 8 4 3 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 4 12 12 C 1.53117 * 109.51996 * 274.59411 * 11 10 8 13 13 C 1.53044 * 109.27347 * 182.50149 * 12 11 10 14 14 N 1.46842 * 109.57507 * 59.08447 * 13 12 11 15 15 C 1.46898 * 111.00175 * 174.18900 * 14 13 12 16 16 C 1.50702 * 109.47304 * 294.21355 * 15 14 13 17 17 O 1.21287 * 119.99777 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99972 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00005 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99795 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00276 * 179.97438 * 19 18 16 22 22 N 1.31420 * 119.99705 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00234 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47361 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47245 * 120.00216 * 23 21 19 26 26 H 1.48500 * 109.47082 * 239.99573 * 23 21 19 27 27 C 1.46844 * 111.20089 * 298.29252 * 14 13 12 28 28 C 1.53038 * 109.52583 * 61.73632 * 27 14 13 29 29 H 1.08998 * 109.47149 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47290 * 300.00431 * 1 2 3 31 31 H 1.09005 * 109.46809 * 60.00125 * 1 2 3 32 32 H 1.09000 * 109.47361 * 59.99589 * 3 2 1 33 33 H 1.09007 * 109.47122 * 299.99567 * 3 2 1 34 34 H 1.08997 * 109.46965 * 59.99984 * 7 6 4 35 35 H 1.09003 * 109.47204 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.47432 * 299.99953 * 7 6 4 37 37 H 0.97005 * 120.00161 * 359.72088 * 10 8 4 38 38 H 1.08996 * 109.52288 * 34.71840 * 11 10 8 39 39 H 1.09000 * 109.50654 * 302.38056 * 12 11 10 40 40 H 1.09007 * 109.50377 * 62.50030 * 12 11 10 41 41 H 1.08996 * 109.41182 * 299.06975 * 13 12 11 42 42 H 1.09005 * 109.44978 * 179.12783 * 13 12 11 43 43 H 1.08998 * 109.47242 * 54.21116 * 15 14 13 44 44 H 1.09001 * 109.47346 * 174.20798 * 15 14 13 45 45 H 0.97003 * 119.99619 * 359.97438 * 18 16 15 46 46 H 0.96999 * 119.99957 * 180.02562 * 22 21 19 47 47 H 1.09008 * 109.45902 * 301.72288 * 27 14 13 48 48 H 1.08999 * 109.45964 * 181.75229 * 27 14 13 49 49 H 1.08998 * 109.50143 * 180.88033 * 28 27 14 50 50 H 1.09005 * 109.49917 * 60.76506 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8514 0.5682 0.8410 6 8 3.9649 0.5796 -1.2219 7 6 4.0463 -0.8460 -1.1670 8 6 4.1480 2.5560 0.1232 9 8 4.8063 3.0106 -0.7883 10 7 3.9644 3.2771 1.2469 11 6 4.5594 4.6105 1.3670 12 6 6.0001 4.4844 1.8701 13 6 6.5955 5.8823 2.0531 14 7 5.7853 6.6401 3.0152 15 6 6.4049 7.9368 3.3192 16 6 7.7101 7.7135 4.0387 17 8 8.0868 6.5852 4.2753 18 7 8.4588 8.7677 4.4192 19 6 9.6459 8.5646 5.0741 20 1 9.9814 7.5598 5.2848 21 6 10.4180 9.6513 5.4659 22 7 10.0105 10.8739 5.2081 23 14 12.0358 9.3746 6.3577 24 1 12.2661 7.9170 6.5247 25 1 13.1450 9.9639 5.5653 26 1 11.9824 10.0230 7.6926 27 6 4.4102 6.8146 2.5303 28 6 3.7491 5.4446 2.3630 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8901 34 1 3.0646 -1.2572 -0.9322 35 1 4.3794 -1.2283 -2.1319 36 1 4.7575 -1.1399 -0.3951 37 1 3.4346 2.9151 1.9744 38 1 4.5552 5.1003 0.3933 39 1 6.0075 3.9588 2.8250 40 1 6.5920 3.9280 1.1432 41 1 6.6015 6.4017 1.0948 42 1 7.6161 5.7962 2.4260 43 1 6.5896 8.4778 2.3911 44 1 5.7360 8.5196 3.9525 45 1 8.1576 9.6701 4.2295 46 1 10.5497 11.6325 5.4813 47 1 4.4265 7.3297 1.5697 48 1 3.8438 7.4058 3.2498 49 1 2.7338 5.5738 1.9882 50 1 3.7200 4.9346 3.3259 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229116219.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:08 Heat of formation + Delta-G solvation = -152.920009 kcal Electronic energy + Delta-G solvation = -30384.373319 eV Core-core repulsion = 26026.209467 eV Total energy + Delta-G solvation = -4358.163852 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.54137 -39.25069 -38.46536 -37.61340 -37.14713 -35.02896 -33.85478 -32.31464 -31.23674 -30.76103 -30.54052 -27.56019 -27.12244 -26.26481 -24.73316 -23.94296 -23.13438 -22.46660 -20.66844 -19.90047 -19.17622 -17.93744 -17.84489 -17.54689 -16.92245 -16.37299 -16.09885 -15.92345 -15.66877 -15.36472 -14.98422 -14.80452 -14.68397 -14.47203 -14.34673 -13.91621 -13.75677 -13.55112 -13.35913 -13.17086 -13.07134 -12.97431 -12.33884 -12.26941 -11.96252 -11.88837 -11.68067 -11.56400 -11.48914 -11.18517 -11.10440 -11.07256 -10.65915 -10.53691 -10.33124 -10.31902 -10.21437 -10.17885 -9.75848 -9.48562 -9.19610 -8.42296 -7.96336 -7.83058 -6.40554 -3.81134 2.24145 2.52353 3.17212 3.22947 3.27799 3.34967 3.67344 3.91588 3.99125 4.25434 4.32072 4.45181 4.52936 4.65962 4.73815 4.84298 4.88588 4.89326 5.02789 5.03088 5.06806 5.17171 5.19489 5.26505 5.27408 5.33219 5.42632 5.51648 5.53934 5.62291 5.68898 5.80793 5.82307 5.96784 5.99632 6.10014 6.21386 6.30121 6.45236 6.51256 6.54624 6.68505 7.21801 7.31130 7.43215 7.56747 7.95973 8.08179 8.63321 9.19705 9.56152 10.07930 10.77291 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024850 B = 0.001799 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.493859 B =15561.028372 C =16155.675252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.045 3.955 4 C 0.076 3.924 5 H 0.095 0.905 6 O -0.355 6.355 7 C 0.028 3.972 8 C 0.517 3.483 9 O -0.509 6.509 10 N -0.722 5.722 11 C 0.144 3.856 12 C -0.121 4.121 13 C 0.055 3.945 14 N -0.516 5.516 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.297 4.297 20 H 0.104 0.896 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.058 3.942 28 C -0.120 4.120 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.399 0.601 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.107 0.893 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.392 0.608 46 H 0.270 0.730 47 H 0.032 0.968 48 H 0.079 0.921 49 H 0.070 0.930 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.127 -16.859 -9.319 28.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.032 4.032 4 C 0.014 3.986 5 H 0.113 0.887 6 O -0.272 6.272 7 C -0.068 4.068 8 C 0.301 3.699 9 O -0.383 6.383 10 N -0.375 5.375 11 C 0.040 3.960 12 C -0.159 4.159 13 C -0.073 4.073 14 N -0.241 5.241 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.202 5.202 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.071 4.071 28 C -0.158 4.158 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.060 0.940 37 H 0.233 0.767 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.125 0.875 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.051 0.949 48 H 0.098 0.902 49 H 0.088 0.912 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.147 -17.447 -9.543 28.308 hybrid contribution 0.074 0.907 0.223 0.937 sum -20.073 -16.540 -9.320 27.629 Atomic orbital electron populations 1.22790 0.80429 1.03041 1.00304 1.87852 1.20259 1.27025 1.95495 1.23038 0.92537 0.85834 1.01822 1.21926 0.92401 0.93745 0.90536 0.88690 1.88019 1.87766 1.20320 1.31140 1.22963 1.01178 0.80153 1.02512 1.20059 0.81217 0.85983 0.82661 1.90758 1.38502 1.70152 1.38839 1.46081 1.54650 1.18551 1.18209 1.21171 0.93395 0.81490 0.99943 1.21925 0.94411 0.97873 1.01739 1.22215 1.00014 0.92436 0.92622 1.61533 1.00970 1.17427 1.44165 1.21832 0.96574 0.90536 0.99558 1.19748 0.86271 0.85839 0.85209 1.90483 1.73065 1.22833 1.59720 1.41879 1.19629 1.07491 1.51167 1.19746 0.95997 0.94916 1.32033 0.87863 1.25258 0.99935 0.94646 0.98169 1.69624 1.39324 0.97958 1.47452 0.85806 0.81138 0.78699 0.78731 1.19236 1.20800 1.20787 1.22027 0.90432 0.95850 0.98777 1.21832 0.98163 0.96149 0.99642 0.89347 0.93777 0.93802 0.91782 0.91613 0.92245 0.89463 0.94044 0.76652 0.89614 0.90632 0.91333 0.95789 0.87476 0.93436 0.89312 0.77507 0.91963 0.94945 0.90250 0.91159 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.93 8.83 -40.09 -0.35 -3.28 16 3 C 0.05 0.33 5.57 37.16 0.21 0.54 16 4 C 0.08 0.71 2.91 -27.88 -0.08 0.63 16 5 H 0.10 0.72 7.79 -51.93 -0.40 0.31 16 6 O -0.36 -4.17 9.88 -59.70 -0.59 -4.76 16 7 C 0.03 0.23 10.71 101.05 1.08 1.32 16 8 C 0.52 6.03 7.15 -10.98 -0.08 5.95 16 9 O -0.51 -8.35 16.17 -14.30 -0.23 -8.58 16 10 N -0.72 -6.71 4.98 -53.69 -0.27 -6.98 16 11 C 0.14 1.64 2.52 -67.81 -0.17 1.46 16 12 C -0.12 -1.70 5.68 -26.65 -0.15 -1.86 16 13 C 0.06 0.92 5.10 -3.83 -0.02 0.90 16 14 N -0.52 -8.33 4.40 -236.11 -1.04 -9.37 16 15 C 0.05 0.81 5.45 -4.98 -0.03 0.79 16 16 C 0.44 10.37 7.46 -10.98 -0.08 10.29 16 17 O -0.58 -15.33 13.90 5.55 0.08 -15.25 16 18 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 19 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 23 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.06 0.69 5.46 -3.83 -0.02 0.67 16 28 C -0.12 -1.16 5.57 -26.65 -0.15 -1.31 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.06 0.32 7.76 -51.93 -0.40 -0.08 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.46 6.40 -51.93 -0.33 0.12 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.04 0.30 8.09 -51.93 -0.42 -0.12 16 37 H 0.40 2.47 8.30 -40.82 -0.34 2.13 16 38 H 0.09 1.12 7.57 -51.93 -0.39 0.72 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.11 2.18 5.78 -51.93 -0.30 1.88 16 43 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 44 H 0.09 1.39 7.99 -51.93 -0.41 0.98 16 45 H 0.39 9.46 7.90 -40.82 -0.32 9.13 16 46 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.03 0.38 8.14 -51.92 -0.42 -0.05 16 48 H 0.08 0.85 8.02 -51.93 -0.42 0.44 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 405.87 15.07 6.12 6.12 Total: -1.00 -34.86 405.87 -7.59 -42.45 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.33 Total: 8.99 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 1.38 Total: 12.70 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.64 Total: -54.47 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -1.10 Total: -31.87 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.86 -7.59 -42.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229116219.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.471 kcal (2) G-P(sol) polarization free energy of solvation -34.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds