Wall clock time and date at job start Wed Apr 1 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00000 * 2 1 4 4 C 1.52996 * 109.47007 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.47052 * 304.99361 * 4 3 2 6 6 O 1.42899 * 109.47392 * 64.99716 * 4 3 2 7 7 C 1.42896 * 113.99952 * 269.99949 * 6 4 3 8 8 C 1.50706 * 109.46892 * 185.00014 * 4 3 2 9 9 O 1.21281 * 119.99699 * 244.99452 * 8 4 3 10 10 N 1.34773 * 120.00080 * 64.99942 * 8 4 3 11 11 C 1.46506 * 119.99969 * 180.02562 * 10 8 4 12 12 C 1.53117 * 109.51996 * 274.59411 * 11 10 8 13 13 C 1.53044 * 109.27347 * 182.50149 * 12 11 10 14 14 N 1.46842 * 109.57507 * 59.08447 * 13 12 11 15 15 C 1.46898 * 111.00175 * 174.18900 * 14 13 12 16 16 C 1.50702 * 109.47304 * 294.21355 * 15 14 13 17 17 O 1.21287 * 119.99777 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99972 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00005 * 179.97438 * 18 16 15 20 20 H 1.08006 * 119.99795 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00276 * 179.97438 * 19 18 16 22 22 N 1.31420 * 119.99705 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00234 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.47361 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47245 * 120.00216 * 23 21 19 26 26 H 1.48500 * 109.47082 * 239.99573 * 23 21 19 27 27 C 1.46844 * 111.20089 * 298.29252 * 14 13 12 28 28 C 1.53038 * 109.52583 * 61.73632 * 27 14 13 29 29 H 1.08998 * 109.47149 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47290 * 300.00431 * 1 2 3 31 31 H 1.09005 * 109.46809 * 60.00125 * 1 2 3 32 32 H 1.09000 * 109.47361 * 59.99589 * 3 2 1 33 33 H 1.09007 * 109.47122 * 299.99567 * 3 2 1 34 34 H 1.08997 * 109.46965 * 59.99984 * 7 6 4 35 35 H 1.09003 * 109.47204 * 180.02562 * 7 6 4 36 36 H 1.09002 * 109.47432 * 299.99953 * 7 6 4 37 37 H 0.97005 * 120.00161 * 359.72088 * 10 8 4 38 38 H 1.08996 * 109.52288 * 34.71840 * 11 10 8 39 39 H 1.09000 * 109.50654 * 302.38056 * 12 11 10 40 40 H 1.09007 * 109.50377 * 62.50030 * 12 11 10 41 41 H 1.08996 * 109.41182 * 299.06975 * 13 12 11 42 42 H 1.09005 * 109.44978 * 179.12783 * 13 12 11 43 43 H 1.08998 * 109.47242 * 54.21116 * 15 14 13 44 44 H 1.09001 * 109.47346 * 174.20798 * 15 14 13 45 45 H 0.97003 * 119.99619 * 359.97438 * 18 16 15 46 46 H 0.96999 * 119.99957 * 180.02562 * 22 21 19 47 47 H 1.09008 * 109.45902 * 301.72288 * 27 14 13 48 48 H 1.08999 * 109.45964 * 181.75229 * 27 14 13 49 49 H 1.08998 * 109.50143 * 180.88033 * 28 27 14 50 50 H 1.09005 * 109.49917 * 60.76506 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8514 0.5682 0.8410 6 8 3.9649 0.5796 -1.2219 7 6 4.0463 -0.8460 -1.1670 8 6 4.1480 2.5560 0.1232 9 8 4.8063 3.0106 -0.7883 10 7 3.9644 3.2771 1.2469 11 6 4.5594 4.6105 1.3670 12 6 6.0001 4.4844 1.8701 13 6 6.5955 5.8823 2.0531 14 7 5.7853 6.6401 3.0152 15 6 6.4049 7.9368 3.3192 16 6 7.7101 7.7135 4.0387 17 8 8.0868 6.5852 4.2753 18 7 8.4588 8.7677 4.4192 19 6 9.6459 8.5646 5.0741 20 1 9.9814 7.5598 5.2848 21 6 10.4180 9.6513 5.4659 22 7 10.0105 10.8739 5.2081 23 14 12.0358 9.3746 6.3577 24 1 12.2661 7.9170 6.5247 25 1 13.1450 9.9639 5.5653 26 1 11.9824 10.0230 7.6926 27 6 4.4102 6.8146 2.5303 28 6 3.7491 5.4446 2.3630 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8901 34 1 3.0646 -1.2572 -0.9322 35 1 4.3794 -1.2283 -2.1319 36 1 4.7575 -1.1399 -0.3951 37 1 3.4346 2.9151 1.9744 38 1 4.5552 5.1003 0.3933 39 1 6.0075 3.9588 2.8250 40 1 6.5920 3.9280 1.1432 41 1 6.6015 6.4017 1.0948 42 1 7.6161 5.7962 2.4260 43 1 6.5896 8.4778 2.3911 44 1 5.7360 8.5196 3.9525 45 1 8.1576 9.6701 4.2295 46 1 10.5497 11.6325 5.4813 47 1 4.4265 7.3297 1.5697 48 1 3.8438 7.4058 3.2498 49 1 2.7338 5.5738 1.9882 50 1 3.7200 4.9346 3.3259 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229116219.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:07 Heat of formation + Delta-G solvation = -180.966193 kcal Electronic energy + Delta-G solvation = -30385.589493 eV Core-core repulsion = 26026.209467 eV Total energy + Delta-G solvation = -4359.380026 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.45917 -40.55085 -39.50460 -38.80609 -37.91699 -36.25419 -35.73715 -33.43790 -33.11513 -31.81282 -31.41550 -28.67551 -27.95563 -26.93968 -26.30782 -24.89343 -24.22395 -23.54133 -21.57966 -21.05868 -20.87271 -19.86067 -18.71454 -18.28858 -17.71195 -17.59756 -17.12296 -16.78632 -16.64507 -16.37293 -16.35306 -16.20922 -15.72110 -15.67405 -15.39095 -15.31524 -15.00367 -14.83439 -14.41564 -14.32445 -14.04600 -13.76642 -13.50810 -13.48209 -13.18082 -12.95892 -12.85723 -12.77437 -12.46448 -12.40648 -12.29959 -12.17645 -12.17264 -12.10885 -11.86004 -11.57106 -11.43747 -11.07861 -10.79975 -10.51941 -10.30835 -10.10878 -9.96868 -9.19123 -8.45608 -5.93758 1.36545 1.37871 1.41640 1.55665 1.71544 2.07636 2.29006 2.67485 2.77557 2.99400 3.21390 3.39475 3.63848 3.73360 3.82390 3.86946 3.93987 4.07760 4.20721 4.27709 4.31101 4.37718 4.41334 4.48583 4.51785 4.53305 4.56693 4.57488 4.61614 4.64246 4.67806 4.76749 4.87257 4.90877 4.93994 4.99940 5.08302 5.13357 5.29138 5.42273 5.42846 5.89991 5.98622 6.07952 6.08711 6.26573 6.47462 6.62605 7.12802 7.14904 7.58822 8.14960 8.72048 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.024850 B = 0.001799 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.493859 B =15561.028372 C =16155.675252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.051 3.949 4 C 0.077 3.923 5 H 0.115 0.885 6 O -0.390 6.390 7 C 0.027 3.973 8 C 0.517 3.483 9 O -0.564 6.564 10 N -0.703 5.703 11 C 0.152 3.848 12 C -0.112 4.112 13 C 0.060 3.940 14 N -0.530 5.530 15 C 0.057 3.943 16 C 0.441 3.559 17 O -0.614 6.614 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.274 1.274 25 H -0.272 1.272 26 H -0.270 1.270 27 C 0.053 3.947 28 C -0.109 4.109 29 H 0.099 0.901 30 H 0.058 0.942 31 H 0.044 0.956 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.419 0.581 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.025 0.975 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.117 0.883 45 H 0.396 0.604 46 H 0.277 0.723 47 H 0.040 0.960 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.575 -17.016 -8.591 30.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.026 4.026 4 C 0.015 3.985 5 H 0.133 0.867 6 O -0.308 6.308 7 C -0.069 4.069 8 C 0.302 3.698 9 O -0.441 6.441 10 N -0.356 5.356 11 C 0.047 3.953 12 C -0.151 4.151 13 C -0.068 4.068 14 N -0.255 5.255 15 C -0.074 4.074 16 C 0.228 3.772 17 O -0.500 6.500 18 N -0.213 5.213 19 C -0.460 4.460 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.199 1.199 25 H -0.198 1.198 26 H -0.195 1.195 27 C -0.074 4.074 28 C -0.147 4.147 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.257 0.743 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.043 0.957 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.135 0.865 45 H 0.230 0.770 46 H 0.086 0.914 47 H 0.058 0.942 48 H 0.119 0.881 49 H 0.124 0.876 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -22.655 -17.606 -8.788 30.008 hybrid contribution 0.802 0.897 -0.026 1.203 sum -21.854 -16.709 -8.814 28.887 Atomic orbital electron populations 1.22969 0.78970 1.04092 1.01060 1.87816 1.21809 1.26997 1.95644 1.22956 0.90892 0.86106 1.02670 1.22005 0.93759 0.92223 0.90517 0.86731 1.87972 1.88227 1.22008 1.32590 1.23074 1.01814 0.78707 1.03286 1.20553 0.80266 0.86712 0.82236 1.90736 1.41030 1.71514 1.40840 1.45869 1.53894 1.17644 1.18224 1.20966 0.91990 0.82674 0.99678 1.21796 0.96315 0.95997 1.00984 1.22007 0.98216 0.94148 0.92473 1.61516 1.02752 1.16572 1.44644 1.21731 0.93831 0.91933 0.99886 1.20832 0.87605 0.84768 0.83987 1.90463 1.74360 1.24304 1.60827 1.41946 1.19500 1.08151 1.51740 1.19677 0.97893 0.94264 1.34149 0.90413 1.26013 1.02739 0.94214 0.98376 1.69680 1.40426 0.98432 1.47671 0.84886 0.77307 0.78192 0.78040 1.19903 1.19769 1.19524 1.22228 0.87812 0.97721 0.99653 1.21810 0.99106 0.94386 0.99401 0.88256 0.92338 0.93703 0.88934 0.92694 0.91591 0.88828 0.93254 0.74349 0.91048 0.91202 0.93116 0.95652 0.92040 0.91895 0.86530 0.77042 0.91378 0.94156 0.88114 0.87638 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 11.01 113.37 1.25 1.43 16 2 O -0.40 -5.24 8.83 -144.34 -1.27 -6.51 16 3 C 0.05 0.64 5.57 71.98 0.40 1.04 16 4 C 0.08 1.34 2.91 29.85 0.09 1.42 16 5 H 0.12 1.50 7.79 -2.38 -0.02 1.49 16 6 O -0.39 -9.06 9.88 -125.59 -1.24 -10.30 16 7 C 0.03 0.43 10.71 113.37 1.21 1.64 16 8 C 0.52 11.68 7.15 87.66 0.63 12.31 16 9 O -0.56 -18.89 16.17 15.96 0.26 -18.63 16 10 N -0.70 -11.69 4.98 -442.16 -2.20 -13.90 16 11 C 0.15 3.22 2.52 45.07 0.11 3.33 16 12 C -0.11 -3.20 5.68 30.65 0.17 -3.03 16 13 C 0.06 2.04 5.10 86.33 0.44 2.48 16 14 N -0.53 -16.50 4.40 -900.92 -3.96 -20.46 16 15 C 0.06 1.96 5.45 85.56 0.47 2.42 16 16 C 0.44 21.01 7.46 87.66 0.65 21.67 16 17 O -0.61 -33.91 13.90 -3.05 -0.04 -33.95 16 18 N -0.58 -29.69 5.29 -306.98 -1.62 -31.32 16 19 C -0.33 -18.90 9.68 84.04 0.81 -18.08 16 20 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 21 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 22 N -0.92 -49.97 13.05 21.66 0.28 -49.69 16 23 Si 0.99 43.42 29.55 68.60 2.03 45.45 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 C 0.05 1.11 5.46 86.33 0.47 1.58 16 28 C -0.11 -1.73 5.57 30.64 0.17 -1.56 16 29 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.04 0.31 8.14 -2.38 -0.02 0.29 16 32 H 0.09 0.60 7.76 -2.39 -0.02 0.58 16 33 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.07 0.94 6.40 -2.39 -0.02 0.92 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 0.68 8.09 -2.39 -0.02 0.66 16 37 H 0.42 3.80 8.30 -92.70 -0.77 3.03 16 38 H 0.07 1.79 7.57 -2.39 -0.02 1.77 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.06 2.66 5.78 -2.38 -0.01 2.64 16 43 H 0.06 1.98 8.12 -2.39 -0.02 1.96 16 44 H 0.12 3.36 7.99 -2.39 -0.02 3.34 16 45 H 0.40 19.36 7.90 -92.71 -0.73 18.62 16 46 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 47 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 48 H 0.10 1.72 8.02 -2.39 -0.02 1.70 16 49 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -79.40 405.87 -0.98 -80.37 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.55 Total: 32.55 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 7.35 Total: 26.37 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -7.51 Total: -115.36 kcal Atomic # 8 Polarization: -67.09 SS G_CDS: -2.30 Total: -69.39 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -79.40 -0.98 -80.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229116219.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.592 kcal (2) G-P(sol) polarization free energy of solvation -79.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds