Wall clock time and date at job start Wed Apr 1 2020 02:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 H 1.09008 * 109.47017 * 55.00070 * 4 3 2 6 6 O 1.42903 * 109.47386 * 295.00474 * 4 3 2 7 7 C 1.42900 * 114.00543 * 149.99728 * 6 4 3 8 8 C 1.50698 * 109.47721 * 175.00196 * 4 3 2 9 9 O 1.21282 * 120.00142 * 114.99319 * 8 4 3 10 10 N 1.34776 * 119.99835 * 295.00729 * 8 4 3 11 11 C 1.46500 * 120.00140 * 179.97438 * 10 8 4 12 12 C 1.53116 * 109.52253 * 274.67692 * 11 10 8 13 13 C 1.53038 * 109.27983 * 182.44053 * 12 11 10 14 14 N 1.46845 * 109.52347 * 59.18153 * 13 12 11 15 15 C 1.46898 * 111.00039 * 174.16131 * 14 13 12 16 16 C 1.50699 * 109.47203 * 294.21253 * 15 14 13 17 17 O 1.21289 * 119.99956 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00066 * 180.02562 * 16 15 14 19 19 C 1.37091 * 120.00115 * 179.97438 * 18 16 15 20 20 H 1.08004 * 120.00199 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00385 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00578 * 179.97438 * 21 19 18 23 23 Si 1.86808 * 119.99758 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47149 * 90.00164 * 23 21 19 25 25 H 1.48501 * 109.47226 * 209.99864 * 23 21 19 26 26 H 1.48496 * 109.47149 * 330.00150 * 23 21 19 27 27 C 1.46848 * 111.19529 * 298.25591 * 14 13 12 28 28 C 1.53037 * 109.52276 * 61.74408 * 27 14 13 29 29 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 30 30 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 32 32 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 33 33 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 34 34 H 1.09004 * 109.46816 * 300.00223 * 7 6 4 35 35 H 1.09002 * 109.46675 * 60.00118 * 7 6 4 36 36 H 1.08997 * 109.47146 * 180.02562 * 7 6 4 37 37 H 0.97002 * 120.00011 * 359.97438 * 10 8 4 38 38 H 1.08995 * 109.52255 * 34.86666 * 11 10 8 39 39 H 1.09003 * 109.50407 * 302.38473 * 12 11 10 40 40 H 1.09007 * 109.50415 * 62.49686 * 12 11 10 41 41 H 1.09004 * 109.46100 * 299.16615 * 13 12 11 42 42 H 1.09005 * 109.45230 * 179.19236 * 13 12 11 43 43 H 1.09010 * 109.46879 * 54.20797 * 15 14 13 44 44 H 1.09003 * 109.47106 * 174.20574 * 15 14 13 45 45 H 0.97003 * 120.00234 * 359.97438 * 18 16 15 46 46 H 0.97006 * 120.00789 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.46819 * 301.72804 * 27 14 13 48 48 H 1.09001 * 109.45514 * 181.74860 * 27 14 13 49 49 H 1.09001 * 109.50508 * 180.87484 * 28 27 14 50 50 H 1.09007 * 109.50581 * 60.75807 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8508 0.5684 -0.8428 6 8 3.9659 0.5791 1.2201 7 6 5.1691 -0.1822 1.0987 8 6 4.1481 2.5559 -0.1244 9 8 4.8070 3.0102 0.7868 10 7 3.9635 3.2775 -1.2477 11 6 4.5586 4.6108 -1.3678 12 6 3.6258 5.6464 -0.7340 13 6 4.2234 7.0434 -0.9163 14 7 4.3922 7.3219 -2.3482 15 6 4.8340 8.7057 -2.5669 16 6 3.7448 9.6546 -2.1375 17 8 2.7029 9.2207 -1.6935 18 7 3.9282 10.9852 -2.2479 19 6 2.9372 11.8484 -1.8578 20 1 2.0093 11.4621 -1.4623 21 6 3.1263 13.2203 -1.9710 22 7 2.1762 14.0477 -1.5975 23 14 4.7314 13.8885 -2.6543 24 1 4.6200 14.0329 -4.1280 25 1 5.0142 15.2139 -2.0471 26 1 5.8359 12.9500 -2.3309 27 6 5.3211 6.3686 -2.9686 28 6 4.7562 4.9515 -2.8475 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 1.6887 1.8463 0.8900 34 1 5.0198 -0.9850 0.3766 35 1 5.9767 0.4664 0.7592 36 1 5.4283 -0.6090 2.0676 37 1 3.4367 2.9140 -1.9765 38 1 5.5220 4.6269 -0.8585 39 1 2.6501 5.6020 -1.2179 40 1 3.5151 5.4339 0.3294 41 1 5.1929 7.0913 -0.4203 42 1 3.5545 7.7844 -0.4786 43 1 5.7337 8.8966 -1.9818 44 1 5.0500 8.8552 -3.6248 45 1 4.7613 11.3322 -2.6034 46 1 2.3081 15.0054 -1.6769 47 1 6.2854 6.4196 -2.4630 48 1 5.4494 6.6196 -4.0216 49 1 5.4532 4.2425 -3.2943 50 1 3.7983 4.8961 -3.3648 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229116224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:12 Heat of formation + Delta-G solvation = -146.409275 kcal Electronic energy + Delta-G solvation = -30549.194858 eV Core-core repulsion = 26191.313332 eV Total energy + Delta-G solvation = -4357.881525 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.61275 -39.31923 -38.38039 -37.76173 -37.18365 -35.09034 -33.92189 -32.38539 -31.66498 -30.82282 -30.69212 -27.50456 -27.10423 -26.37739 -24.68320 -23.88532 -23.21761 -22.47096 -20.67097 -19.98771 -19.36497 -18.27826 -17.98691 -17.56810 -16.81716 -16.33899 -16.07938 -15.94277 -15.66626 -15.42793 -15.07213 -14.97835 -14.79098 -14.59289 -14.39445 -14.05082 -13.69522 -13.47410 -13.37668 -13.27892 -13.01061 -12.81794 -12.49747 -12.27187 -12.18621 -11.85291 -11.80150 -11.76459 -11.48970 -11.29702 -11.18004 -11.17321 -10.84736 -10.73597 -10.61208 -10.56508 -10.14797 -9.97793 -9.61380 -9.54104 -9.23666 -8.56273 -8.18107 -7.96285 -6.31082 -3.82403 2.18137 2.67042 3.02313 3.06455 3.14851 3.31101 3.43710 3.73407 3.89998 4.10152 4.37317 4.42903 4.52249 4.61417 4.78034 4.82617 4.83805 4.94578 4.96045 4.99529 5.03541 5.12803 5.20050 5.21346 5.25689 5.30665 5.33367 5.40704 5.44709 5.55663 5.59379 5.65755 5.71989 5.86066 5.90586 5.94440 6.03507 6.16994 6.39337 6.46633 6.59158 6.66642 7.14389 7.21623 7.32386 7.58636 7.91430 8.14686 8.60272 8.95391 9.42584 9.83561 10.81999 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020379 B = 0.001952 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.611331 B =14342.169556 C =14956.191519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.384 6.384 3 C 0.069 3.931 4 C 0.077 3.923 5 H 0.094 0.906 6 O -0.350 6.350 7 C 0.031 3.969 8 C 0.492 3.508 9 O -0.515 6.515 10 N -0.722 5.722 11 C 0.142 3.858 12 C -0.120 4.120 13 C 0.054 3.946 14 N -0.516 5.516 15 C 0.043 3.957 16 C 0.452 3.548 17 O -0.559 6.559 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.041 3.959 22 N -0.882 5.882 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.058 3.942 28 C -0.120 4.120 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.090 0.910 37 H 0.399 0.601 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.108 0.892 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.032 0.968 48 H 0.079 0.921 49 H 0.070 0.930 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.063 -27.727 -2.894 28.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.008 4.008 4 C 0.015 3.985 5 H 0.112 0.888 6 O -0.267 6.267 7 C -0.066 4.066 8 C 0.277 3.723 9 O -0.390 6.390 10 N -0.375 5.375 11 C 0.038 3.962 12 C -0.159 4.159 13 C -0.074 4.074 14 N -0.241 5.241 15 C -0.088 4.088 16 C 0.238 3.762 17 O -0.440 6.440 18 N -0.231 5.231 19 C -0.432 4.432 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.196 1.196 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.071 4.071 28 C -0.158 4.158 29 H 0.062 0.938 30 H 0.107 0.893 31 H 0.063 0.937 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.234 0.766 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.043 0.957 42 H 0.126 0.874 43 H 0.067 0.933 44 H 0.108 0.892 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.051 0.949 48 H 0.098 0.902 49 H 0.089 0.911 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.319 -27.688 -1.911 28.259 hybrid contribution 1.783 0.930 -0.786 2.159 sum 7.101 -26.758 -2.698 27.816 Atomic orbital electron populations 1.22797 0.80302 1.03060 1.00430 1.87884 1.20186 1.26680 1.95510 1.22482 0.90235 0.85968 1.02117 1.21998 0.94130 0.91993 0.90398 0.88781 1.88035 1.42168 1.66963 1.29503 1.22867 0.86466 0.94278 1.02967 1.21098 0.81445 0.87176 0.82627 1.90748 1.39037 1.70830 1.38356 1.46199 1.54680 1.18155 1.18513 1.21158 0.97488 0.80844 0.96685 1.21917 0.99630 0.93452 1.00918 1.22232 0.99884 0.97676 0.87569 1.61537 1.46930 1.01112 1.14500 1.21869 0.96302 0.88803 1.01835 1.19644 0.89242 0.82500 0.84799 1.90524 1.28404 1.76449 1.48663 1.42217 1.16851 1.05510 1.58511 1.19417 0.97621 0.86662 1.39533 0.86273 1.25040 0.97681 0.95768 0.97731 1.69618 1.32538 1.03278 1.46726 0.86673 0.83263 0.79560 0.79889 1.19622 1.20215 1.19543 1.22030 0.93457 0.91558 1.00010 1.21834 1.02564 0.96463 0.94965 0.93754 0.89328 0.93655 0.91167 0.91407 0.93770 0.93758 0.89108 0.76640 0.89734 0.90578 0.91299 0.95724 0.87441 0.93334 0.89167 0.79739 0.91629 0.94946 0.90231 0.91123 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.38 -3.46 10.67 -40.08 -0.43 -3.89 16 3 C 0.07 0.58 5.57 37.16 0.21 0.78 16 4 C 0.08 0.71 2.80 -27.89 -0.08 0.63 16 5 H 0.09 0.64 7.79 -51.92 -0.40 0.24 16 6 O -0.35 -4.02 9.85 -59.70 -0.59 -4.61 16 7 C 0.03 0.26 10.81 101.05 1.09 1.35 16 8 C 0.49 5.46 7.10 -10.99 -0.08 5.38 16 9 O -0.52 -8.00 16.17 -14.31 -0.23 -8.24 16 10 N -0.72 -6.41 4.98 -53.69 -0.27 -6.68 16 11 C 0.14 1.54 2.52 -67.81 -0.17 1.37 16 12 C -0.12 -1.63 5.67 -26.65 -0.15 -1.78 16 13 C 0.05 0.86 5.10 -3.83 -0.02 0.84 16 14 N -0.52 -7.89 4.40 -236.10 -1.04 -8.92 16 15 C 0.04 0.71 5.45 -4.98 -0.03 0.68 16 16 C 0.45 10.09 7.46 -10.99 -0.08 10.01 16 17 O -0.56 -14.58 13.90 5.55 0.08 -14.50 16 18 N -0.59 -13.94 5.09 -10.97 -0.06 -13.99 16 19 C -0.30 -8.52 10.16 -14.94 -0.15 -8.67 16 20 H 0.12 3.82 7.39 -52.48 -0.39 3.44 16 21 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.70 13.96 55.50 0.77 -24.92 16 23 Si 0.88 19.29 27.74 -169.99 -4.71 14.57 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 27 C 0.06 0.65 5.46 -3.83 -0.02 0.63 16 28 C -0.12 -1.10 5.57 -26.65 -0.15 -1.25 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.42 7.77 -51.93 -0.40 0.02 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.04 0.29 8.09 -51.93 -0.42 -0.13 16 35 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.40 2.34 8.31 -40.82 -0.34 2.00 16 38 H 0.08 1.06 7.58 -51.93 -0.39 0.67 16 39 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.11 2.12 5.78 -51.93 -0.30 1.82 16 43 H 0.05 0.72 8.12 -51.92 -0.42 0.30 16 44 H 0.09 1.26 7.99 -51.93 -0.41 0.85 16 45 H 0.37 7.66 5.76 -40.82 -0.24 7.42 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.08 0.78 8.02 -51.93 -0.42 0.37 16 49 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 406.27 15.07 6.12 6.12 Total: -1.00 -36.03 406.27 -7.34 -43.37 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -8.38 Total: 9.40 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: 1.39 Total: 12.29 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.59 Total: -54.52 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.17 Total: -31.24 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.03 -7.34 -43.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229116224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.038 kcal (2) G-P(sol) polarization free energy of solvation -36.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds