Wall clock time and date at job start Wed Apr 1 2020 02:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42897 * 109.47060 * 2 1 4 4 C 1.42907 * 113.99865 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47219 * 179.97438 * 4 3 2 6 6 O 1.42901 * 109.46781 * 64.99989 * 5 4 3 7 7 C 1.42899 * 113.99694 * 179.97438 * 6 5 4 8 8 C 1.53074 * 109.43928 * 89.79715 * 7 6 5 9 9 C 1.53200 * 109.29270 * 181.23499 * 8 7 6 10 10 N 1.46924 * 108.89456 * 305.57637 * 9 8 7 11 11 C 1.34775 * 120.63159 * 233.55608 * 10 9 8 12 12 O 1.21585 * 119.99810 * 354.96981 * 11 10 9 13 13 N 1.34773 * 119.99548 * 174.96204 * 11 10 9 14 14 C 1.46509 * 119.99865 * 185.07796 * 13 11 10 15 15 C 1.50691 * 109.47308 * 180.02562 * 14 13 11 16 16 O 1.21299 * 120.00146 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00272 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00206 * 179.97438 * 17 15 14 19 19 H 1.07992 * 120.00081 * 0.02562 * 18 17 15 20 20 C 1.38951 * 119.99861 * 180.02562 * 18 17 15 21 21 N 1.31417 * 119.99936 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00149 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46825 * 89.99775 * 22 20 18 24 24 H 1.48493 * 109.47449 * 210.00048 * 22 20 18 25 25 H 1.48500 * 109.46939 * 330.00306 * 22 20 18 26 26 C 1.46925 * 118.73744 * 53.54010 * 10 9 8 27 27 C 1.53041 * 109.46041 * 210.00130 * 7 6 5 28 28 H 1.09001 * 109.47369 * 300.00393 * 1 2 3 29 29 H 1.09007 * 109.47138 * 59.99832 * 1 2 3 30 30 H 1.08999 * 109.47732 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47369 * 239.99607 * 2 1 3 32 32 H 1.08999 * 109.46836 * 119.99985 * 2 1 3 33 33 H 1.08997 * 109.47088 * 60.00235 * 4 3 2 34 34 H 1.08998 * 109.47115 * 299.99812 * 4 3 2 35 35 H 1.08997 * 109.47089 * 305.00462 * 5 4 3 36 36 H 1.08999 * 109.47070 * 184.99866 * 5 4 3 37 37 H 1.08997 * 109.46054 * 329.97664 * 7 6 5 38 38 H 1.08999 * 109.39304 * 61.36118 * 8 7 6 39 39 H 1.09001 * 109.62443 * 301.24975 * 8 7 6 40 40 H 1.09003 * 109.58604 * 185.71544 * 9 8 7 41 41 H 1.09006 * 109.58223 * 65.43764 * 9 8 7 42 42 H 0.97000 * 120.00552 * 5.07719 * 13 11 10 43 43 H 1.09005 * 109.46845 * 300.00179 * 14 13 11 44 44 H 1.09003 * 109.47202 * 59.99741 * 14 13 11 45 45 H 0.96998 * 119.99384 * 0.02562 * 17 15 14 46 46 H 0.96996 * 119.99850 * 179.97438 * 21 20 18 47 47 H 1.08998 * 109.59207 * 66.17170 * 26 10 9 48 48 H 1.09002 * 109.59022 * 186.46095 * 26 10 9 49 49 H 1.08996 * 109.49614 * 58.67679 * 27 7 6 50 50 H 1.08998 * 109.52116 * 298.59581 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8254 2.9384 -0.0001 6 8 3.3976 3.5461 1.2204 7 6 3.7193 4.9346 1.3222 8 6 2.5727 5.7671 0.7429 9 6 2.9344 7.2535 0.8256 10 7 3.2803 7.5824 2.2151 11 6 2.6654 8.5974 2.8540 12 8 1.8828 9.3083 2.2537 13 7 2.9181 8.8241 4.1583 14 6 2.1688 9.8549 4.8812 15 6 2.6393 9.9077 6.3118 16 8 3.5142 9.1578 6.6906 17 7 2.0881 10.7882 7.1705 18 6 2.5158 10.8358 8.4722 19 1 3.2947 10.1682 8.8094 20 6 1.9471 11.7432 9.3575 21 7 0.9988 12.5554 8.9473 22 14 2.5303 11.8087 11.1309 23 1 3.6511 12.7759 11.2479 24 1 1.4102 12.2409 12.0048 25 1 2.9935 10.4614 11.5497 26 6 4.3090 6.7835 2.8951 27 6 3.9308 5.3025 2.7926 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.8340 0.9764 -0.8892 34 1 3.8333 0.9767 0.8908 35 1 3.3500 3.4409 -0.8424 36 1 4.9083 3.0253 -0.0892 37 1 4.6320 5.1380 0.7621 38 1 1.6647 5.5811 1.3165 39 1 2.4089 5.4899 -0.2985 40 1 2.0823 7.8550 0.5089 41 1 3.7871 7.4586 0.1783 42 1 3.5960 8.3050 4.6185 43 1 2.3344 10.8231 4.4086 44 1 1.1056 9.6157 4.8566 45 1 1.3882 11.3876 6.8677 46 1 0.6015 13.1885 9.5654 47 1 5.2746 6.9479 2.4170 48 1 4.3657 7.0767 3.9434 49 1 4.7328 4.6926 3.2085 50 1 3.0110 5.1226 3.3490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001248536707.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:33:48 Heat of formation + Delta-G solvation = -157.964971 kcal Electronic energy + Delta-G solvation = -29827.081681 eV Core-core repulsion = 25468.699064 eV Total energy + Delta-G solvation = -4358.382618 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.42719 -39.09276 -38.36098 -37.94961 -36.36059 -34.49165 -33.72741 -32.59198 -31.59528 -31.35689 -31.20664 -29.29755 -27.53607 -24.98595 -24.24874 -23.42234 -23.15629 -22.78287 -21.18560 -19.65966 -19.46884 -18.43941 -17.86942 -17.39737 -17.20325 -16.20946 -16.04983 -15.71468 -15.53771 -15.39377 -15.25875 -14.72922 -14.46824 -14.39007 -14.16474 -14.02897 -13.92575 -13.57576 -13.37154 -13.19835 -12.83620 -12.81454 -12.51007 -12.24596 -12.13477 -11.88970 -11.76641 -11.65933 -11.61549 -11.44919 -11.25142 -11.18491 -11.11151 -10.78727 -10.44716 -10.30316 -9.98979 -9.97583 -9.69542 -9.61898 -8.93845 -8.60669 -8.45907 -8.08067 -6.49598 -3.91576 2.70398 3.12938 3.20857 3.23282 3.27848 3.28703 3.44511 3.77099 3.99213 4.16355 4.46212 4.56332 4.61443 4.65375 4.75875 4.79343 4.86295 4.87851 4.90479 4.95939 4.97085 5.02693 5.07978 5.18866 5.19600 5.27588 5.38214 5.39639 5.43735 5.54495 5.63207 5.64299 5.75491 5.76940 5.92913 5.95450 6.03120 6.07009 6.10615 6.49146 6.77677 6.80308 6.97629 7.04022 7.47734 7.94307 8.16860 8.47138 8.78842 9.06420 9.41521 9.89392 10.67285 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.001742 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.310929 B =16072.743735 C =16701.867807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.064 3.936 5 C 0.063 3.937 6 O -0.372 6.372 7 C 0.093 3.907 8 C -0.155 4.155 9 C 0.134 3.866 10 N -0.633 5.633 11 C 0.710 3.290 12 O -0.595 6.595 13 N -0.725 5.725 14 C 0.127 3.873 15 C 0.429 3.571 16 O -0.599 6.599 17 N -0.549 5.549 18 C -0.305 4.305 19 H 0.105 0.895 20 C 0.025 3.975 21 N -0.894 5.894 22 Si 0.933 3.067 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.269 1.269 26 C 0.113 3.887 27 C -0.131 4.131 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.406 0.594 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.396 0.604 46 H 0.274 0.726 47 H 0.070 0.930 48 H 0.091 0.909 49 H 0.082 0.918 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.969 -20.978 -20.303 29.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.300 6.300 4 C -0.012 4.012 5 C -0.013 4.013 6 O -0.291 6.291 7 C 0.035 3.965 8 C -0.194 4.194 9 C 0.010 3.990 10 N -0.371 5.371 11 C 0.411 3.589 12 O -0.474 6.474 13 N -0.385 5.385 14 C -0.001 4.001 15 C 0.215 3.785 16 O -0.486 6.486 17 N -0.184 5.184 18 C -0.434 4.434 19 H 0.123 0.877 20 C -0.177 4.177 21 N -0.534 5.534 22 Si 0.760 3.240 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.011 4.011 27 C -0.169 4.169 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.246 0.754 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.230 0.770 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.109 0.891 49 H 0.101 0.899 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.618 -20.716 -20.179 29.286 hybrid contribution 0.456 0.042 0.725 0.857 sum 5.073 -20.674 -19.454 28.838 Atomic orbital electron populations 1.21739 0.93636 1.02186 1.03363 1.22458 0.95820 0.83847 0.99849 1.87987 1.20415 1.26193 1.95359 1.22510 0.82327 0.95670 1.00726 1.22542 0.98034 0.92501 0.88267 1.88011 1.80942 1.22706 1.37464 1.22069 0.96554 0.81083 0.96768 1.22456 1.00074 0.94877 1.01981 1.21364 1.01700 0.94711 0.81177 1.47221 1.42088 1.33635 1.14159 1.15738 0.80788 0.80838 0.81556 1.90889 1.40370 1.49617 1.66541 1.44970 1.43482 1.41246 1.08755 1.20798 0.96131 0.91839 0.91367 1.19760 0.86726 0.85153 0.86878 1.90483 1.34742 1.44945 1.78389 1.41784 1.34652 1.32216 1.09712 1.19726 1.19896 1.19115 0.84692 0.87685 1.25325 0.96022 0.95688 1.00699 1.69618 1.25378 1.21591 1.36858 0.85810 0.78122 0.78843 0.81229 1.20293 1.20817 1.19345 1.21633 0.90987 0.89851 0.98605 1.21985 1.03743 0.95697 0.95509 0.91618 0.91881 0.91159 0.93643 0.93397 0.92028 0.92439 0.92457 0.91851 0.92134 0.90417 0.90618 0.88444 0.91901 0.75383 0.89934 0.90071 0.77005 0.91609 0.91133 0.89104 0.89937 0.90245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.40 6.66 37.16 0.25 0.65 16 3 O -0.38 -3.71 10.31 -40.08 -0.41 -4.12 16 4 C 0.06 0.47 6.32 37.16 0.23 0.70 16 5 C 0.06 0.47 6.13 37.16 0.23 0.70 16 6 O -0.37 -3.86 9.95 -40.08 -0.40 -4.26 16 7 C 0.09 0.85 2.57 -26.67 -0.07 0.78 16 8 C -0.16 -1.52 5.70 -26.59 -0.15 -1.67 16 9 C 0.13 1.47 6.41 -3.71 -0.02 1.45 16 10 N -0.63 -8.30 2.97 -178.49 -0.53 -8.83 16 11 C 0.71 12.12 8.30 -86.92 -0.72 11.40 16 12 O -0.60 -11.97 15.79 5.29 0.08 -11.89 16 13 N -0.72 -12.72 5.44 -66.41 -0.36 -13.09 16 14 C 0.13 2.43 6.16 -5.19 -0.03 2.40 16 15 C 0.43 9.96 7.85 -10.99 -0.09 9.87 16 16 O -0.60 -15.35 15.24 5.54 0.08 -15.27 16 17 N -0.55 -13.72 5.29 -10.97 -0.06 -13.78 16 18 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 19 H 0.11 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 21 N -0.89 -23.99 13.05 55.50 0.72 -23.26 16 22 Si 0.93 20.62 29.55 -169.99 -5.02 15.59 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 C 0.11 1.18 6.43 -3.71 -0.02 1.16 16 27 C -0.13 -1.27 5.73 -26.61 -0.15 -1.43 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.42 7.84 -51.93 -0.41 0.01 16 36 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 37 H 0.06 0.45 7.79 -51.93 -0.40 0.05 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 0.64 7.84 -51.93 -0.41 0.23 16 40 H 0.10 1.23 7.03 -51.93 -0.37 0.87 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.41 6.91 4.89 -40.82 -0.20 6.71 16 43 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 45 H 0.40 9.54 7.90 -40.82 -0.32 9.22 16 46 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.09 1.03 5.56 -51.93 -0.29 0.74 16 49 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 409.03 15.07 6.16 6.16 Total: -1.00 -33.48 409.03 -8.38 -41.86 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: -8.24 Total: 13.37 kcal Atomic # 6 Polarization: 17.92 SS G_CDS: -0.41 Total: 17.52 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: -0.23 Total: -58.95 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.64 Total: -35.54 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.48 -8.38 -41.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248536707.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.107 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds