Wall clock time and date at job start Wed Apr 1 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99693 * 2 1 4 4 C 1.52998 * 109.47019 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47436 * 304.99677 * 4 3 2 6 6 O 1.42899 * 109.47284 * 64.99951 * 4 3 2 7 7 C 1.42898 * 113.99814 * 269.99830 * 6 4 3 8 8 C 1.50704 * 109.47255 * 184.99652 * 4 3 2 9 9 O 1.21278 * 120.00105 * 245.00039 * 8 4 3 10 10 N 1.34778 * 119.99957 * 64.99695 * 8 4 3 11 11 C 1.46497 * 120.00298 * 180.02562 * 10 8 4 12 12 H 1.09005 * 109.50327 * 325.08168 * 11 10 8 13 13 C 1.53118 * 109.50257 * 85.19749 * 11 10 8 14 14 C 1.53115 * 109.16028 * 177.59689 * 13 11 10 15 15 C 1.53042 * 109.27905 * 302.34801 * 14 13 11 16 16 N 1.46848 * 109.52482 * 59.17833 * 15 14 13 17 17 C 1.46897 * 110.99905 * 174.16128 * 16 15 14 18 18 C 1.50706 * 109.46897 * 190.60166 * 17 16 15 19 19 O 1.21290 * 119.99844 * 6.26518 * 18 17 16 20 20 N 1.34776 * 119.99840 * 186.26876 * 18 17 16 21 21 C 1.37093 * 119.99697 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00716 * 359.97438 * 21 20 18 23 23 C 1.38957 * 119.99914 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99946 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00129 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47174 * 89.99422 * 25 23 21 27 27 H 1.48503 * 109.47322 * 209.99815 * 25 23 21 28 28 H 1.48509 * 109.46997 * 329.99567 * 25 23 21 29 29 C 1.46840 * 111.19644 * 298.26146 * 16 15 14 30 30 H 1.09007 * 109.47100 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47111 * 60.00406 * 1 2 3 32 32 H 1.08999 * 109.47551 * 300.00436 * 1 2 3 33 33 H 1.08997 * 109.46971 * 299.99389 * 3 2 1 34 34 H 1.09003 * 109.47129 * 59.99470 * 3 2 1 35 35 H 1.09003 * 109.47278 * 59.99787 * 7 6 4 36 36 H 1.09002 * 109.47086 * 179.97438 * 7 6 4 37 37 H 1.09004 * 109.47350 * 299.99974 * 7 6 4 38 38 H 0.97006 * 119.99829 * 0.02562 * 10 8 4 39 39 H 1.08998 * 109.52618 * 297.50362 * 13 11 10 40 40 H 1.09000 * 109.52023 * 57.69687 * 13 11 10 41 41 H 1.09000 * 109.50606 * 182.40565 * 14 13 11 42 42 H 1.09000 * 109.53594 * 62.30454 * 14 13 11 43 43 H 1.09004 * 109.46020 * 299.16268 * 15 14 13 44 44 H 1.09007 * 109.46187 * 179.19701 * 15 14 13 45 45 H 1.09000 * 109.47269 * 310.59889 * 17 16 15 46 46 H 1.08999 * 109.47065 * 70.60304 * 17 16 15 47 47 H 0.96996 * 120.00159 * 359.97438 * 20 18 17 48 48 H 0.96998 * 120.00456 * 180.02562 * 24 23 21 49 49 H 1.09006 * 109.46536 * 301.72434 * 29 16 15 50 50 H 1.09002 * 109.45298 * 181.75415 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5687 0.8427 6 8 3.9658 0.5793 -1.2201 7 6 4.0473 -0.8463 -1.1647 8 6 4.1478 2.5561 0.1244 9 8 4.8068 3.0105 -0.7868 10 7 3.9633 3.2777 1.2477 11 6 4.5581 4.6111 1.3678 12 1 5.5221 4.6267 0.8590 13 6 3.6263 5.6459 0.7311 14 6 4.2265 7.0425 0.9139 15 6 4.4335 7.3122 2.4061 16 7 5.3323 6.2961 2.9684 17 6 5.6640 6.6023 4.3663 18 6 6.7788 5.6991 4.8275 19 8 7.3274 4.9607 4.0369 20 7 7.1660 5.7117 6.1183 21 6 8.1804 4.8904 6.5377 22 1 8.6691 4.2330 5.8339 23 6 8.5793 4.9030 7.8687 24 7 7.9845 5.7026 8.7253 25 14 9.9611 3.7835 8.4404 26 1 11.2598 4.4902 8.3027 27 1 9.7450 3.4174 9.8633 28 1 9.9767 2.5527 7.6095 29 6 4.7555 4.9512 2.8468 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 1.6884 1.8464 0.8900 35 1 3.0654 -1.2575 -0.9304 36 1 4.3803 -1.2289 -2.1294 37 1 4.7579 -1.1399 -0.3920 38 1 3.4365 2.9142 1.9766 39 1 3.5174 5.4326 -0.3323 40 1 2.6501 5.6029 1.2140 41 1 3.5470 7.7877 0.5003 42 1 5.1850 7.0978 0.3978 43 1 3.4727 7.2711 2.9193 44 1 4.8740 8.3004 2.5390 45 1 5.9826 7.6417 4.4449 46 1 4.7854 6.4433 4.9914 47 1 6.7275 6.3024 6.7505 48 1 8.2632 5.7117 9.6544 49 1 3.7932 4.9211 3.3579 50 1 5.4301 4.2246 3.2997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266239851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:55 Heat of formation + Delta-G solvation = -152.988946 kcal Electronic energy + Delta-G solvation = -30939.715807 eV Core-core repulsion = 26581.548966 eV Total energy + Delta-G solvation = -4358.166841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.43281 -39.24419 -38.35757 -37.57485 -37.07020 -34.78145 -33.93118 -32.68859 -31.37864 -31.22612 -29.28274 -27.50304 -27.33474 -26.20003 -24.71567 -24.16417 -22.95326 -22.46529 -20.51256 -19.91356 -19.17489 -17.88193 -17.83708 -17.43667 -16.79107 -16.27566 -16.03905 -15.95353 -15.59531 -15.22147 -14.98473 -14.66985 -14.59880 -14.40131 -14.29105 -14.05076 -13.90900 -13.42589 -13.29178 -13.22758 -13.07103 -12.86211 -12.50924 -12.18978 -11.99213 -11.84287 -11.55157 -11.49894 -11.45830 -11.31617 -11.07918 -10.88005 -10.67729 -10.53870 -10.40378 -10.22779 -10.21664 -10.07201 -9.64498 -9.49322 -9.11102 -8.46412 -7.99448 -7.90634 -6.43075 -3.83743 2.38093 2.62054 3.17008 3.25816 3.31424 3.33604 3.73101 3.89236 4.01896 4.24223 4.44058 4.59180 4.64386 4.82154 4.85632 4.90924 4.93662 4.96246 4.98986 5.04612 5.14139 5.22074 5.25283 5.25743 5.31126 5.37095 5.37964 5.58813 5.59900 5.61766 5.68117 5.77414 5.82151 5.95799 6.07100 6.10725 6.22307 6.26522 6.37763 6.40976 6.61088 6.79627 7.20077 7.33762 7.38098 7.54138 8.05223 8.10184 8.60633 9.17179 9.53248 10.05156 10.74671 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.002520 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.668839 B =11109.330434 C =12602.994709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.046 3.954 4 C 0.076 3.924 5 H 0.096 0.904 6 O -0.355 6.355 7 C 0.028 3.972 8 C 0.520 3.480 9 O -0.509 6.509 10 N -0.721 5.721 11 C 0.152 3.848 12 H 0.102 0.898 13 C -0.129 4.129 14 C -0.112 4.112 15 C 0.053 3.947 16 N -0.511 5.511 17 C 0.048 3.952 18 C 0.441 3.559 19 O -0.575 6.575 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.051 3.949 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.398 0.602 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.030 0.970 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.047 0.953 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.027 0.973 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.916 -5.115 -13.385 22.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C -0.032 4.032 4 C 0.014 3.986 5 H 0.114 0.886 6 O -0.272 6.272 7 C -0.068 4.068 8 C 0.304 3.696 9 O -0.382 6.382 10 N -0.374 5.374 11 C 0.047 3.953 12 H 0.120 0.880 13 C -0.168 4.168 14 C -0.151 4.151 15 C -0.075 4.075 16 N -0.236 5.236 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.458 6.458 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 C -0.077 4.077 30 H 0.106 0.894 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.232 0.768 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.048 0.952 44 H 0.095 0.905 45 H 0.110 0.890 46 H 0.065 0.935 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.045 0.955 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -16.417 -5.319 -14.834 22.756 hybrid contribution -0.922 -0.265 1.985 2.205 sum -17.339 -5.584 -12.849 22.291 Atomic orbital electron populations 1.22782 0.80529 1.02990 1.00245 1.87857 1.20174 1.27049 1.95485 1.23032 0.92571 0.85785 1.01765 1.21922 0.92330 0.93805 0.90582 0.88596 1.88009 1.87755 1.20283 1.31177 1.22962 1.01186 0.80196 1.02479 1.19992 0.81121 0.85741 0.82748 1.90746 1.38348 1.70464 1.38629 1.45955 1.54805 1.18349 1.18269 1.20981 0.97779 0.79787 0.96719 0.88006 1.21976 0.98468 0.95052 1.01288 1.21516 1.01767 0.95873 0.95900 1.22176 0.94449 0.95845 0.95067 1.61327 1.43242 1.01117 1.17871 1.21857 0.97726 1.00617 0.88115 1.19763 0.87131 0.87214 0.83244 1.90524 1.58158 1.43722 1.53433 1.41880 1.33058 1.37735 1.07503 1.19692 1.11186 1.17993 0.93873 0.87925 1.25253 0.99004 0.97954 0.95727 1.69607 1.42178 1.38237 1.04367 0.85872 0.80637 0.80170 0.77704 1.20378 1.20964 1.19423 1.22332 0.98122 0.92737 0.94508 0.89383 0.93853 0.93819 0.91635 0.91823 0.92289 0.89515 0.93973 0.76793 0.91405 0.92298 0.91304 0.90569 0.95161 0.90471 0.88997 0.93521 0.77530 0.91891 0.95491 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.43 8.83 -40.09 -0.35 -3.78 16 3 C 0.05 0.40 5.57 37.16 0.21 0.61 16 4 C 0.08 0.84 2.91 -27.88 -0.08 0.76 16 5 H 0.10 0.92 7.79 -51.93 -0.40 0.52 16 6 O -0.35 -4.66 9.88 -59.70 -0.59 -5.25 16 7 C 0.03 0.27 10.71 101.05 1.08 1.35 16 8 C 0.52 7.08 7.15 -10.98 -0.08 7.00 16 9 O -0.51 -9.17 16.17 -14.30 -0.23 -9.40 16 10 N -0.72 -8.47 4.98 -53.73 -0.27 -8.73 16 11 C 0.15 2.10 2.62 -67.85 -0.18 1.92 16 12 H 0.10 1.78 7.58 -51.93 -0.39 1.38 16 13 C -0.13 -1.50 5.58 -26.61 -0.15 -1.65 16 14 C -0.11 -1.26 6.09 -26.65 -0.16 -1.42 16 15 C 0.05 0.64 5.46 -3.83 -0.02 0.62 16 16 N -0.51 -8.19 4.35 -236.11 -1.03 -9.21 16 17 C 0.05 0.83 5.45 -4.97 -0.03 0.80 16 18 C 0.44 10.14 7.31 -10.98 -0.08 10.06 16 19 O -0.57 -15.23 14.29 5.55 0.08 -15.15 16 20 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 16 21 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 25 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 29 C 0.05 0.78 4.59 -3.84 -0.02 0.76 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.43 7.77 -51.93 -0.40 0.02 16 35 H 0.06 0.53 6.40 -51.93 -0.33 0.20 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 38 H 0.40 3.53 8.31 -40.82 -0.34 3.19 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 45 H 0.09 1.43 7.98 -51.93 -0.41 1.01 16 46 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 47 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 49 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.10 1.95 6.06 -51.93 -0.31 1.64 16 LS Contribution 406.33 15.07 6.12 6.12 Total: -1.00 -34.53 406.33 -7.60 -42.12 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -8.34 Total: 10.72 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 1.37 Total: 14.27 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.63 Total: -55.56 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.10 Total: -33.58 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.53 -7.60 -42.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266239851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.865 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds