Wall clock time and date at job start Wed Apr 1 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99693 * 2 1 4 4 C 1.52998 * 109.47019 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47436 * 304.99677 * 4 3 2 6 6 O 1.42899 * 109.47284 * 64.99951 * 4 3 2 7 7 C 1.42898 * 113.99814 * 269.99830 * 6 4 3 8 8 C 1.50704 * 109.47255 * 184.99652 * 4 3 2 9 9 O 1.21278 * 120.00105 * 245.00039 * 8 4 3 10 10 N 1.34778 * 119.99957 * 64.99695 * 8 4 3 11 11 C 1.46497 * 120.00298 * 180.02562 * 10 8 4 12 12 H 1.09005 * 109.50327 * 325.08168 * 11 10 8 13 13 C 1.53118 * 109.50257 * 85.19749 * 11 10 8 14 14 C 1.53115 * 109.16028 * 177.59689 * 13 11 10 15 15 C 1.53042 * 109.27905 * 302.34801 * 14 13 11 16 16 N 1.46848 * 109.52482 * 59.17833 * 15 14 13 17 17 C 1.46897 * 110.99905 * 174.16128 * 16 15 14 18 18 C 1.50706 * 109.46897 * 190.60166 * 17 16 15 19 19 O 1.21290 * 119.99844 * 6.26518 * 18 17 16 20 20 N 1.34776 * 119.99840 * 186.26876 * 18 17 16 21 21 C 1.37093 * 119.99697 * 180.02562 * 20 18 17 22 22 H 1.07999 * 120.00716 * 359.97438 * 21 20 18 23 23 C 1.38957 * 119.99914 * 180.02562 * 21 20 18 24 24 N 1.31407 * 119.99946 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00129 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47174 * 89.99422 * 25 23 21 27 27 H 1.48503 * 109.47322 * 209.99815 * 25 23 21 28 28 H 1.48509 * 109.46997 * 329.99567 * 25 23 21 29 29 C 1.46840 * 111.19644 * 298.26146 * 16 15 14 30 30 H 1.09007 * 109.47100 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47111 * 60.00406 * 1 2 3 32 32 H 1.08999 * 109.47551 * 300.00436 * 1 2 3 33 33 H 1.08997 * 109.46971 * 299.99389 * 3 2 1 34 34 H 1.09003 * 109.47129 * 59.99470 * 3 2 1 35 35 H 1.09003 * 109.47278 * 59.99787 * 7 6 4 36 36 H 1.09002 * 109.47086 * 179.97438 * 7 6 4 37 37 H 1.09004 * 109.47350 * 299.99974 * 7 6 4 38 38 H 0.97006 * 119.99829 * 0.02562 * 10 8 4 39 39 H 1.08998 * 109.52618 * 297.50362 * 13 11 10 40 40 H 1.09000 * 109.52023 * 57.69687 * 13 11 10 41 41 H 1.09000 * 109.50606 * 182.40565 * 14 13 11 42 42 H 1.09000 * 109.53594 * 62.30454 * 14 13 11 43 43 H 1.09004 * 109.46020 * 299.16268 * 15 14 13 44 44 H 1.09007 * 109.46187 * 179.19701 * 15 14 13 45 45 H 1.09000 * 109.47269 * 310.59889 * 17 16 15 46 46 H 1.08999 * 109.47065 * 70.60304 * 17 16 15 47 47 H 0.96996 * 120.00159 * 359.97438 * 20 18 17 48 48 H 0.96998 * 120.00456 * 180.02562 * 24 23 21 49 49 H 1.09006 * 109.46536 * 301.72434 * 29 16 15 50 50 H 1.09002 * 109.45298 * 181.75415 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5687 0.8427 6 8 3.9658 0.5793 -1.2201 7 6 4.0473 -0.8463 -1.1647 8 6 4.1478 2.5561 0.1244 9 8 4.8068 3.0105 -0.7868 10 7 3.9633 3.2777 1.2477 11 6 4.5581 4.6111 1.3678 12 1 5.5221 4.6267 0.8590 13 6 3.6263 5.6459 0.7311 14 6 4.2265 7.0425 0.9139 15 6 4.4335 7.3122 2.4061 16 7 5.3323 6.2961 2.9684 17 6 5.6640 6.6023 4.3663 18 6 6.7788 5.6991 4.8275 19 8 7.3274 4.9607 4.0369 20 7 7.1660 5.7117 6.1183 21 6 8.1804 4.8904 6.5377 22 1 8.6691 4.2330 5.8339 23 6 8.5793 4.9030 7.8687 24 7 7.9845 5.7026 8.7253 25 14 9.9611 3.7835 8.4404 26 1 11.2598 4.4902 8.3027 27 1 9.7450 3.4174 9.8633 28 1 9.9767 2.5527 7.6095 29 6 4.7555 4.9512 2.8468 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 1.6884 1.8464 0.8900 35 1 3.0654 -1.2575 -0.9304 36 1 4.3803 -1.2289 -2.1294 37 1 4.7579 -1.1399 -0.3920 38 1 3.4365 2.9142 1.9766 39 1 3.5174 5.4326 -0.3323 40 1 2.6501 5.6029 1.2140 41 1 3.5470 7.7877 0.5003 42 1 5.1850 7.0978 0.3978 43 1 3.4727 7.2711 2.9193 44 1 4.8740 8.3004 2.5390 45 1 5.9826 7.6417 4.4449 46 1 4.7854 6.4433 4.9914 47 1 6.7275 6.3024 6.7505 48 1 8.2632 5.7117 9.6544 49 1 3.7932 4.9211 3.3579 50 1 5.4301 4.2246 3.2997 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266239851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:54 Heat of formation + Delta-G solvation = -180.720962 kcal Electronic energy + Delta-G solvation = -30940.918357 eV Core-core repulsion = 26581.548966 eV Total energy + Delta-G solvation = -4359.369392 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.49925 -40.54453 -39.49772 -38.83057 -37.93296 -36.11102 -35.75014 -33.84714 -33.21196 -32.26297 -30.28058 -28.94966 -27.97902 -26.88574 -26.50337 -25.00913 -24.21121 -23.47610 -21.60886 -21.04687 -20.84133 -19.85509 -18.77081 -18.32560 -17.72563 -17.58869 -17.16420 -16.86812 -16.53718 -16.44240 -16.22467 -16.17362 -15.73392 -15.67422 -15.53192 -15.24675 -14.97525 -14.80469 -14.54897 -14.36394 -14.08664 -13.78794 -13.55603 -13.48916 -13.25213 -13.04876 -12.88129 -12.72109 -12.46992 -12.41119 -12.36106 -12.19952 -12.12786 -11.92691 -11.77317 -11.60249 -11.43785 -11.11184 -10.81141 -10.54102 -10.31868 -10.15104 -9.97810 -9.17978 -8.45714 -5.93652 1.35226 1.37536 1.41536 1.53527 1.63564 2.08055 2.28876 2.64913 2.74854 3.00894 3.21657 3.42251 3.61463 3.71377 3.81747 3.86594 3.90819 4.05492 4.16018 4.25164 4.27814 4.35167 4.39426 4.45950 4.50551 4.55058 4.57773 4.59809 4.64731 4.66013 4.69498 4.74075 4.85320 4.91965 4.93946 5.00063 5.06815 5.21309 5.28972 5.41284 5.42650 5.89993 5.95400 6.05947 6.08857 6.24932 6.41671 6.62983 7.08183 7.15208 7.59225 8.15845 8.71648 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010577 B = 0.002520 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2646.668839 B =11109.330434 C =12602.994709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.054 3.946 4 C 0.077 3.923 5 H 0.111 0.889 6 O -0.387 6.387 7 C 0.026 3.974 8 C 0.519 3.481 9 O -0.561 6.561 10 N -0.707 5.707 11 C 0.158 3.842 12 H 0.055 0.945 13 C -0.119 4.119 14 C -0.109 4.109 15 C 0.054 3.946 16 N -0.538 5.538 17 C 0.062 3.938 18 C 0.439 3.561 19 O -0.616 6.616 20 N -0.575 5.575 21 C -0.330 4.330 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.989 3.011 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.274 1.274 29 C 0.059 3.941 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.415 0.585 39 H 0.058 0.942 40 H 0.086 0.914 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.113 0.887 46 H 0.073 0.927 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.057 0.943 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.368 -4.673 -12.533 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.322 6.322 3 C -0.024 4.024 4 C 0.015 3.985 5 H 0.128 0.872 6 O -0.305 6.305 7 C -0.069 4.069 8 C 0.305 3.695 9 O -0.439 6.439 10 N -0.360 5.360 11 C 0.053 3.947 12 H 0.073 0.927 13 C -0.158 4.158 14 C -0.148 4.148 15 C -0.073 4.073 16 N -0.264 5.264 17 C -0.069 4.069 18 C 0.227 3.773 19 O -0.502 6.502 20 N -0.212 5.212 21 C -0.459 4.459 22 H 0.094 0.906 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.813 3.187 26 H -0.199 1.199 27 H -0.194 1.194 28 H -0.199 1.199 29 C -0.069 4.069 30 H 0.118 0.882 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.065 0.935 38 H 0.252 0.748 39 H 0.077 0.923 40 H 0.105 0.895 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.107 0.893 45 H 0.131 0.869 46 H 0.091 0.909 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.919 -4.867 -13.944 24.001 hybrid contribution -0.171 -0.423 1.673 1.734 sum -19.089 -5.290 -12.271 23.301 Atomic orbital electron populations 1.22974 0.78917 1.04134 1.01064 1.87819 1.21870 1.26876 1.95641 1.22916 0.90642 0.86157 1.02656 1.21971 0.93944 0.92015 0.90530 0.87167 1.87964 1.88214 1.22027 1.32341 1.23089 1.01830 0.78679 1.03331 1.20522 0.80238 0.86562 0.82226 1.90718 1.40792 1.71829 1.40529 1.45823 1.54155 1.17688 1.18360 1.20771 0.96734 0.81517 0.95721 0.92666 1.21903 0.98929 0.94314 1.00646 1.21536 1.01419 0.96393 0.95414 1.22281 0.94792 0.94986 0.95232 1.61252 1.45572 1.02321 1.17237 1.21722 0.96157 0.99796 0.89265 1.20872 0.87533 0.86774 0.82144 1.90506 1.59805 1.45488 1.54374 1.41935 1.33010 1.37868 1.08427 1.19601 1.12888 1.19230 0.94215 0.90625 1.25968 1.00851 0.99031 0.95294 1.69658 1.42931 1.38793 1.04717 0.84990 0.77950 0.78165 0.77617 1.19858 1.19434 1.19924 1.22152 0.98171 0.91646 0.94956 0.88175 0.93474 0.92535 0.92280 0.89316 0.91486 0.88526 0.93531 0.74804 0.92344 0.89527 0.88136 0.92818 0.92699 0.89340 0.86855 0.90880 0.76974 0.91340 0.92548 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -6.42 8.83 -144.34 -1.27 -7.70 16 3 C 0.05 0.86 5.57 71.98 0.40 1.26 16 4 C 0.08 1.69 2.91 29.85 0.09 1.77 16 5 H 0.11 2.04 7.79 -2.39 -0.02 2.02 16 6 O -0.39 -10.29 9.88 -125.59 -1.24 -11.53 16 7 C 0.03 0.50 10.71 113.37 1.21 1.71 16 8 C 0.52 14.42 7.15 87.66 0.63 15.04 16 9 O -0.56 -21.34 16.17 15.97 0.26 -21.08 16 10 N -0.71 -16.40 4.98 -442.28 -2.20 -18.60 16 11 C 0.16 4.39 2.62 45.04 0.12 4.51 16 12 H 0.06 2.07 7.58 -2.38 -0.02 2.05 16 13 C -0.12 -2.57 5.58 30.67 0.17 -2.39 16 14 C -0.11 -2.22 6.09 30.65 0.19 -2.03 16 15 C 0.05 1.15 5.46 86.33 0.47 1.62 16 16 N -0.54 -16.59 4.35 -900.90 -3.92 -20.51 16 17 C 0.06 2.01 5.45 85.56 0.47 2.48 16 18 C 0.44 20.49 7.31 87.66 0.64 21.13 16 19 O -0.62 -34.02 14.29 -3.06 -0.04 -34.06 16 20 N -0.57 -28.95 5.29 -306.98 -1.62 -30.58 16 21 C -0.33 -18.60 9.68 84.04 0.81 -17.79 16 22 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 24 N -0.92 -49.08 13.05 21.66 0.28 -48.79 16 25 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 29 C 0.06 1.76 4.59 86.33 0.40 2.16 16 30 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.09 0.95 7.77 -2.39 -0.02 0.93 16 35 H 0.07 1.14 6.40 -2.39 -0.02 1.13 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 0.82 8.09 -2.38 -0.02 0.80 16 38 H 0.41 6.73 8.31 -92.70 -0.77 5.96 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 43 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 1.71 8.01 -2.38 -0.02 1.69 16 45 H 0.11 3.24 7.98 -2.39 -0.02 3.23 16 46 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 47 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 48 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 49 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 50 H 0.06 2.32 6.06 -2.39 -0.01 2.30 16 Total: -1.00 -78.93 406.33 -0.97 -79.91 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.55 Total: 37.16 kcal Atomic # 6 Polarization: 23.51 SS G_CDS: 7.31 Total: 30.82 kcal Atomic # 7 Polarization: -111.02 SS G_CDS: -7.46 Total: -118.48 kcal Atomic # 8 Polarization: -72.06 SS G_CDS: -2.30 Total: -74.36 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -78.93 -0.97 -79.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266239851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.813 kcal (2) G-P(sol) polarization free energy of solvation -78.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds