Wall clock time and date at job start Wed Apr 1 2020 02:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00362 * 2 1 4 4 C 1.52996 * 109.47556 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47078 * 305.00116 * 4 3 2 6 6 O 1.42904 * 109.47028 * 64.99697 * 4 3 2 7 7 C 1.42898 * 113.99876 * 270.00291 * 6 4 3 8 8 C 1.50699 * 109.47464 * 184.99969 * 4 3 2 9 9 O 1.21280 * 119.99966 * 245.00288 * 8 4 3 10 10 N 1.34775 * 119.99968 * 64.99540 * 8 4 3 11 11 C 1.46494 * 120.00226 * 180.02562 * 10 8 4 12 12 H 1.09003 * 109.49966 * 35.08265 * 11 10 8 13 13 C 1.53122 * 109.50368 * 275.00570 * 11 10 8 14 14 C 1.53119 * 109.15843 * 182.40107 * 13 11 10 15 15 C 1.53045 * 109.27942 * 57.65498 * 14 13 11 16 16 N 1.46843 * 109.51801 * 300.81823 * 15 14 13 17 17 C 1.46902 * 110.99758 * 185.83903 * 16 15 14 18 18 C 1.50702 * 109.47027 * 66.04468 * 17 16 15 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00005 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00057 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47191 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46534 * 120.00189 * 25 23 21 28 28 H 1.48498 * 109.47283 * 240.00132 * 25 23 21 29 29 C 1.46845 * 111.20143 * 61.74309 * 16 15 14 30 30 H 1.09000 * 109.47358 * 299.99919 * 1 2 3 31 31 H 1.09004 * 109.47071 * 60.00178 * 1 2 3 32 32 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47036 * 59.99407 * 3 2 1 34 34 H 1.08998 * 109.46965 * 300.00417 * 3 2 1 35 35 H 1.09000 * 109.47240 * 299.99513 * 7 6 4 36 36 H 1.09000 * 109.47714 * 59.99940 * 7 6 4 37 37 H 1.09007 * 109.46978 * 180.02562 * 7 6 4 38 38 H 0.96998 * 119.99864 * 0.02562 * 10 8 4 39 39 H 1.08998 * 109.52375 * 62.50170 * 13 11 10 40 40 H 1.08998 * 109.57623 * 302.33714 * 13 11 10 41 41 H 1.08996 * 109.50539 * 297.71239 * 14 13 11 42 42 H 1.09000 * 109.50615 * 177.59509 * 14 13 11 43 43 H 1.08998 * 109.46085 * 180.80300 * 15 14 13 44 44 H 1.08994 * 109.45072 * 60.82559 * 15 14 13 45 45 H 1.09004 * 109.47131 * 306.04712 * 17 16 15 46 46 H 1.09000 * 109.47732 * 186.04822 * 17 16 15 47 47 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 48 48 H 0.96996 * 120.00330 * 179.97438 * 24 23 21 49 49 H 1.09009 * 109.46022 * 58.27123 * 29 16 15 50 50 H 1.09002 * 109.46467 * 178.23340 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8508 0.5685 0.8427 6 8 3.9658 0.5791 -1.2201 7 6 4.0472 -0.8465 -1.1647 8 6 4.1480 2.5559 0.1245 9 8 4.8069 3.0103 -0.7867 10 7 3.9634 3.2775 1.2477 11 6 4.5584 4.6108 1.3679 12 1 4.5490 5.1025 0.3951 13 6 6.0019 4.4837 1.8626 14 6 6.5964 5.8833 2.0427 15 6 5.7314 6.6772 3.0243 16 7 4.3609 6.7711 2.5056 17 6 3.5360 7.6430 3.3526 18 6 4.0492 9.0574 3.2677 19 8 5.0075 9.3140 2.5699 20 7 3.4396 10.0383 3.9625 21 6 3.9029 11.3260 3.8809 22 1 4.7562 11.5544 3.2595 23 6 3.2748 12.3372 4.5975 24 7 2.2368 12.0591 5.3540 25 14 3.9067 14.0916 4.4868 26 1 5.0780 14.1393 3.5753 27 1 2.8332 14.9718 3.9593 28 1 4.3106 14.5584 5.8374 29 6 3.7525 5.4416 2.3690 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8899 35 1 4.7578 -1.1401 -0.3921 36 1 3.0653 -1.2577 -0.9304 37 1 4.3811 -1.2291 -2.1292 38 1 3.4366 2.9140 1.9766 39 1 6.5902 3.9295 1.1312 40 1 6.0161 3.9565 2.8164 41 1 6.6190 6.3956 1.0809 42 1 7.6098 5.8005 2.4354 43 1 6.1440 7.6790 3.1438 44 1 5.7205 6.1714 3.9897 45 1 3.5868 7.2994 4.3859 46 1 2.5019 7.6105 3.0094 47 1 2.6730 9.8332 4.5204 48 1 1.7985 12.7649 5.8546 49 1 3.7508 4.9417 3.3377 50 1 2.7277 5.5460 2.0127 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266239853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:02 Heat of formation + Delta-G solvation = -152.306482 kcal Electronic energy + Delta-G solvation = -30505.268966 eV Core-core repulsion = 26147.131718 eV Total energy + Delta-G solvation = -4358.137247 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.56504 -39.28271 -38.45967 -37.62032 -37.15510 -34.86884 -33.86818 -32.78162 -31.47691 -31.19383 -29.35168 -27.52049 -27.38070 -26.29802 -24.72334 -24.25266 -22.86411 -22.57667 -20.68895 -19.91233 -19.19250 -17.98683 -17.86810 -17.51206 -16.92299 -16.30244 -16.15733 -15.95383 -15.65739 -15.31278 -14.91489 -14.80901 -14.68028 -14.49692 -14.36031 -14.01151 -13.81055 -13.46515 -13.42113 -13.26406 -13.12684 -12.95289 -12.48856 -12.28567 -12.09338 -11.93334 -11.58628 -11.55076 -11.47084 -11.32148 -11.08874 -10.83733 -10.61338 -10.48296 -10.34338 -10.30722 -10.23213 -10.17838 -9.78162 -9.48302 -9.26667 -8.46477 -7.99325 -7.88490 -6.42715 -3.83320 2.21565 2.47706 3.15840 3.23420 3.26665 3.33951 3.60261 3.88784 4.03115 4.24333 4.31801 4.44072 4.52820 4.73025 4.75957 4.79570 4.88122 4.91995 5.02417 5.03382 5.10872 5.17692 5.21221 5.23762 5.25277 5.28636 5.34958 5.49612 5.54836 5.60385 5.69765 5.77998 5.88590 5.95510 6.05810 6.09070 6.19849 6.27501 6.46269 6.53008 6.54923 6.66334 7.17535 7.26401 7.36089 7.54919 7.94254 8.05884 8.60813 9.17598 9.53481 10.05172 10.75111 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.020383 B = 0.001913 C = 0.001797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.372986 B =14634.859696 C =15576.418962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.044 3.956 4 C 0.077 3.923 5 H 0.094 0.906 6 O -0.355 6.355 7 C 0.029 3.971 8 C 0.518 3.482 9 O -0.505 6.505 10 N -0.723 5.723 11 C 0.149 3.851 12 H 0.101 0.899 13 C -0.129 4.129 14 C -0.111 4.111 15 C 0.050 3.950 16 N -0.511 5.511 17 C 0.048 3.952 18 C 0.444 3.556 19 O -0.575 6.575 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.051 3.949 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.040 0.960 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.398 0.602 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.106 0.894 44 H 0.022 0.978 45 H 0.048 0.952 46 H 0.089 0.911 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.034 0.966 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.035 -26.455 -4.327 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.307 6.307 3 C -0.033 4.033 4 C 0.015 3.985 5 H 0.112 0.888 6 O -0.272 6.272 7 C -0.068 4.068 8 C 0.302 3.698 9 O -0.378 6.378 10 N -0.377 5.377 11 C 0.045 3.955 12 H 0.119 0.881 13 C -0.168 4.168 14 C -0.149 4.149 15 C -0.077 4.077 16 N -0.235 5.235 17 C -0.083 4.083 18 C 0.229 3.771 19 O -0.459 6.459 20 N -0.201 5.201 21 C -0.427 4.427 22 H 0.122 0.878 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.078 4.078 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.232 0.768 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.124 0.876 44 H 0.041 0.959 45 H 0.066 0.934 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.052 0.948 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.827 -25.661 -6.011 26.419 hybrid contribution -0.995 0.193 1.870 2.127 sum -2.822 -25.468 -4.141 25.956 Atomic orbital electron populations 1.22794 0.80342 1.03018 1.00428 1.87834 1.20332 1.27028 1.95524 1.23043 0.92424 0.85849 1.02030 1.21912 0.92507 0.93617 0.90454 0.88818 1.88030 1.87721 1.20263 1.31184 1.22960 1.01177 0.80203 1.02443 1.20026 0.81263 0.85976 0.82526 1.90769 1.38355 1.70101 1.38602 1.46003 1.54997 1.18421 1.18266 1.21002 0.92217 0.80965 1.01277 0.88051 1.21982 0.95600 0.98241 1.00933 1.21508 0.98142 0.94102 1.01158 1.22325 0.88299 1.02695 0.94403 1.61375 1.02237 1.08800 1.51131 1.21836 0.97680 0.93435 0.95358 1.19707 0.86713 0.85957 0.84733 1.90498 1.29307 1.82993 1.43084 1.41871 1.29542 1.07217 1.41516 1.19750 1.13868 0.82767 1.26268 0.87821 1.25260 0.96067 1.00397 0.96293 1.69617 1.21046 1.34255 1.29475 0.85803 0.78822 0.81707 0.78039 1.19196 1.20769 1.20805 1.22247 0.98378 0.89955 0.97205 0.93742 0.93705 0.89363 0.91740 0.91435 0.94166 0.92204 0.89457 0.76828 0.91457 0.92295 0.90515 0.91372 0.87568 0.95950 0.93410 0.89306 0.77530 0.91954 0.94762 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.97 8.83 -40.08 -0.35 -3.32 16 3 C 0.04 0.33 5.57 37.16 0.21 0.54 16 4 C 0.08 0.70 2.91 -27.89 -0.08 0.62 16 5 H 0.09 0.64 7.79 -51.93 -0.40 0.24 16 6 O -0.35 -4.05 9.88 -59.70 -0.59 -4.64 16 7 C 0.03 0.22 10.71 101.05 1.08 1.30 16 8 C 0.52 5.92 7.14 -10.99 -0.08 5.84 16 9 O -0.51 -8.20 16.17 -14.30 -0.23 -8.43 16 10 N -0.72 -6.59 4.98 -53.73 -0.27 -6.86 16 11 C 0.15 1.76 2.62 -67.85 -0.18 1.58 16 12 H 0.10 1.50 7.58 -51.93 -0.39 1.10 16 13 C -0.13 -1.53 5.58 -26.61 -0.15 -1.67 16 14 C -0.11 -1.51 6.09 -26.65 -0.16 -1.67 16 15 C 0.05 0.79 5.11 -3.83 -0.02 0.77 16 16 N -0.51 -8.17 4.39 -236.11 -1.04 -9.20 16 17 C 0.05 0.82 5.45 -4.97 -0.03 0.80 16 18 C 0.44 10.21 7.46 -10.98 -0.08 10.13 16 19 O -0.57 -15.17 13.92 5.55 0.08 -15.09 16 20 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 21 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 25 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 C 0.05 0.60 4.93 -3.84 -0.02 0.59 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.35 7.77 -51.93 -0.40 -0.06 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.04 0.26 8.08 -51.93 -0.42 -0.16 16 36 H 0.06 0.44 6.40 -51.93 -0.33 0.11 16 37 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 38 H 0.40 2.33 8.31 -40.82 -0.34 1.99 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.11 2.06 5.80 -51.93 -0.30 1.76 16 44 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 46 H 0.09 1.36 7.98 -51.93 -0.41 0.95 16 47 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 48 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 49 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 50 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 LS Contribution 405.91 15.07 6.12 6.12 Total: -1.00 -34.46 405.91 -7.61 -42.06 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -8.33 Total: 8.88 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: 1.37 Total: 12.24 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.64 Total: -53.73 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.10 Total: -31.48 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.46 -7.61 -42.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266239853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.243 kcal (2) G-P(sol) polarization free energy of solvation -34.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds