Wall clock time and date at job start Wed Apr 1 2020 02:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42896 * 114.00132 * 2 1 4 4 C 1.52998 * 109.47350 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47323 * 305.00356 * 4 3 2 6 6 O 1.42903 * 109.46749 * 65.00240 * 4 3 2 7 7 C 1.42900 * 113.99680 * 269.99685 * 6 4 3 8 8 C 1.50700 * 109.47089 * 184.99823 * 4 3 2 9 9 O 1.21279 * 120.00344 * 244.99930 * 8 4 3 10 10 N 1.34782 * 119.99838 * 65.00431 * 8 4 3 11 11 C 1.47418 * 125.64799 * 355.30132 * 10 8 4 12 12 C 1.54908 * 104.83376 * 155.83659 * 11 10 8 13 13 C 1.55151 * 101.58106 * 37.00907 * 12 11 10 14 14 C 1.47022 * 125.64740 * 174.99500 * 10 8 4 15 15 H 1.09002 * 109.88197 * 300.51127 * 14 10 8 16 16 C 1.52995 * 109.88210 * 61.67627 * 14 10 8 17 17 N 1.46902 * 109.47151 * 185.33718 * 16 14 10 18 18 C 1.46901 * 111.00316 * 185.03296 * 17 16 14 19 19 C 1.50693 * 109.47228 * 180.02562 * 18 17 16 20 20 O 1.21292 * 120.00151 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99884 * 180.02562 * 19 18 17 22 22 C 1.37097 * 119.99794 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00337 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99898 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00036 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 119.99926 * 0.02562 * 24 22 21 27 27 H 1.48492 * 109.47376 * 90.00078 * 26 24 22 28 28 H 1.48500 * 109.46841 * 210.00016 * 26 24 22 29 29 H 1.48501 * 109.46872 * 329.99682 * 26 24 22 30 30 H 1.08999 * 109.46921 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46816 * 59.99580 * 1 2 3 32 32 H 1.09002 * 109.46893 * 299.99593 * 1 2 3 33 33 H 1.09001 * 109.47036 * 300.00462 * 3 2 1 34 34 H 1.09000 * 109.47070 * 60.00076 * 3 2 1 35 35 H 1.08997 * 109.47283 * 300.00027 * 7 6 4 36 36 H 1.08999 * 109.46978 * 60.00606 * 7 6 4 37 37 H 1.09003 * 109.46753 * 180.02562 * 7 6 4 38 38 H 1.09004 * 110.36852 * 274.67327 * 11 10 8 39 39 H 1.09004 * 110.36964 * 36.88688 * 11 10 8 40 40 H 1.08997 * 111.00804 * 155.08723 * 12 11 10 41 41 H 1.09002 * 111.00246 * 278.93513 * 12 11 10 42 42 H 1.09001 * 110.71946 * 82.86191 * 13 12 11 43 43 H 1.09007 * 110.72233 * 206.13629 * 13 12 11 44 44 H 1.09000 * 109.47293 * 305.33901 * 16 14 10 45 45 H 1.09005 * 109.47185 * 65.34344 * 16 14 10 46 46 H 1.00905 * 110.99806 * 61.08061 * 17 16 14 47 47 H 1.08995 * 109.47194 * 300.00434 * 18 17 16 48 48 H 1.09009 * 109.46767 * 60.00180 * 18 17 16 49 49 H 0.96991 * 119.99859 * 359.97438 * 21 19 18 50 50 H 0.96997 * 119.99987 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8509 0.5684 0.8427 6 8 3.9658 0.5792 -1.2202 7 6 4.0473 -0.8464 -1.1648 8 6 4.1480 2.5560 0.1244 9 8 4.8069 3.0104 -0.7867 10 7 3.9635 3.2775 1.2478 11 6 3.1103 2.8916 2.3864 12 6 3.6942 3.6602 3.5980 13 6 4.1029 5.0069 2.9449 14 6 4.5847 4.5768 1.5434 15 1 5.6703 4.4788 1.5364 16 6 4.1461 5.6114 0.5051 17 7 4.8692 6.8699 0.7321 18 6 4.3877 7.9240 -0.1706 19 6 5.1512 9.1966 0.0906 20 8 6.0122 9.2229 0.9445 21 7 4.8774 10.3057 -0.6246 22 6 5.5725 11.4634 -0.3872 23 1 6.3392 11.4867 0.3731 24 6 5.2906 12.6067 -1.1249 25 7 5.9571 13.7161 -0.8978 26 14 3.9641 12.5665 -2.4395 27 1 2.6580 12.9345 -1.8363 28 1 4.3029 13.5335 -3.5143 29 1 3.8769 11.1995 -3.0130 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 1.6887 1.8463 0.8900 35 1 4.7579 -1.1400 -0.3922 36 1 3.0654 -1.2575 -0.9306 37 1 4.3811 -1.2289 -2.1294 38 1 2.0785 3.1938 2.2069 39 1 3.1659 1.8160 2.5548 40 1 2.9362 3.8126 4.3662 41 1 4.5633 3.1442 4.0060 42 1 3.2459 5.6766 2.8734 43 1 4.9143 5.4753 3.5021 44 1 4.3690 5.2397 -0.4950 45 1 3.0742 5.7867 0.5971 46 1 5.8647 6.7375 0.6349 47 1 4.5405 7.6147 -1.2045 48 1 3.3253 8.0948 0.0042 49 1 4.1892 10.2847 -1.3077 50 1 5.7601 14.5143 -1.4125 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267964040.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:14 Heat of formation + Delta-G solvation = -139.728596 kcal Electronic energy + Delta-G solvation = -30695.210259 eV Core-core repulsion = 26337.618430 eV Total energy + Delta-G solvation = -4357.591829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.85426 -39.01576 -38.38832 -37.85795 -37.05193 -35.36128 -33.86101 -32.53812 -31.63851 -30.98338 -30.00830 -27.50878 -27.00814 -26.34492 -25.15786 -24.20636 -23.02312 -22.41374 -21.32766 -19.66181 -19.22101 -18.30698 -17.97179 -17.24170 -16.99517 -16.66841 -16.29652 -15.95938 -15.74198 -15.49835 -15.22358 -14.88437 -14.60725 -14.48677 -14.23738 -13.97857 -13.81074 -13.63085 -13.44201 -13.24016 -13.10925 -12.79726 -12.53671 -12.45971 -12.29919 -12.02336 -11.96641 -11.76611 -11.66106 -11.60600 -11.49411 -11.17328 -10.95483 -10.94222 -10.56639 -10.34177 -10.20028 -9.94881 -9.81837 -9.54158 -9.02363 -8.53252 -8.15947 -8.08347 -6.28343 -3.79503 2.13855 2.30919 3.05837 3.09459 3.17332 3.17984 3.45929 3.78051 4.12106 4.13500 4.16324 4.27426 4.31473 4.43432 4.54834 4.63031 4.72421 4.83020 4.85024 4.88428 4.93229 4.98382 5.03826 5.14167 5.15468 5.17679 5.23141 5.24147 5.31502 5.44793 5.47558 5.56134 5.67726 5.69966 5.75676 5.85881 5.90114 5.96941 6.09650 6.16012 6.49469 6.64843 7.06406 7.16610 7.59096 7.61696 7.83332 8.17522 8.62992 8.97920 9.45637 9.86162 10.84820 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.015925 B = 0.002090 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.787609 B =13395.228390 C =13982.840315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.387 6.387 3 C 0.039 3.961 4 C 0.082 3.918 5 H 0.093 0.907 6 O -0.355 6.355 7 C 0.029 3.971 8 C 0.532 3.468 9 O -0.504 6.504 10 N -0.614 5.614 11 C 0.093 3.907 12 C -0.137 4.137 13 C -0.113 4.113 14 C 0.143 3.857 15 H 0.080 0.920 16 C 0.047 3.953 17 N -0.664 5.664 18 C 0.050 3.950 19 C 0.452 3.548 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.040 3.960 25 N -0.882 5.882 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.046 0.954 45 H 0.070 0.930 46 H 0.351 0.649 47 H 0.045 0.955 48 H 0.086 0.914 49 H 0.370 0.630 50 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.443 -31.115 5.302 34.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.306 6.306 3 C -0.038 4.038 4 C 0.020 3.980 5 H 0.111 0.889 6 O -0.272 6.272 7 C -0.068 4.068 8 C 0.318 3.682 9 O -0.377 6.377 10 N -0.351 5.351 11 C -0.030 4.030 12 C -0.175 4.175 13 C -0.151 4.151 14 C 0.040 3.960 15 H 0.098 0.902 16 C -0.084 4.084 17 N -0.297 5.297 18 C -0.083 4.083 19 C 0.237 3.763 20 O -0.446 6.446 21 N -0.231 5.231 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.095 0.905 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.108 0.892 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.171 0.829 47 H 0.063 0.937 48 H 0.104 0.896 49 H 0.203 0.797 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.676 -30.538 5.581 33.532 hybrid contribution -1.040 -0.109 -1.767 2.053 sum -13.716 -30.646 3.814 33.792 Atomic orbital electron populations 1.22791 0.80387 1.03024 1.00362 1.87838 1.20287 1.26986 1.95521 1.23146 0.92507 0.85935 1.02212 1.21824 0.92516 0.93339 0.90316 0.88895 1.88027 1.87733 1.20328 1.31141 1.22962 1.01167 0.80121 1.02500 1.19729 0.81460 0.85667 0.81365 1.90767 1.39149 1.70209 1.37550 1.48536 1.47910 1.21092 1.17580 1.22511 0.94498 0.99901 0.86041 1.22846 1.01584 0.96564 0.96464 1.22602 1.02968 0.96228 0.93256 1.21556 0.97893 0.81213 0.95308 0.90234 1.22295 0.98893 0.89411 0.97761 1.60003 1.09843 1.04751 1.55076 1.21678 1.00065 0.91911 0.94658 1.19697 0.86956 0.84505 0.85097 1.90558 1.34841 1.84456 1.34759 1.42208 1.35687 1.10635 1.34572 1.19432 1.17830 0.85463 1.20526 0.86272 1.25040 0.97902 0.95210 0.98079 1.69621 1.40534 1.01065 1.40996 0.86668 0.82305 0.78359 0.82050 1.19631 1.20201 1.19503 0.89329 0.93752 0.93792 0.91620 0.91368 0.94157 0.92195 0.89391 0.90964 0.90544 0.89581 0.90466 0.89814 0.89150 0.93622 0.91163 0.82927 0.93695 0.89581 0.79693 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.91 8.83 -40.08 -0.35 -3.26 16 3 C 0.04 0.30 5.46 37.16 0.20 0.51 16 4 C 0.08 0.78 2.23 -27.88 -0.06 0.72 16 5 H 0.09 0.69 7.37 -51.93 -0.38 0.31 16 6 O -0.35 -4.17 9.88 -59.70 -0.59 -4.76 16 7 C 0.03 0.23 10.71 101.05 1.08 1.31 16 8 C 0.53 6.39 7.07 -10.98 -0.08 6.31 16 9 O -0.50 -8.36 15.30 -14.30 -0.22 -8.57 16 10 N -0.61 -5.95 3.07 -163.03 -0.50 -6.45 16 11 C 0.09 0.56 5.22 -2.53 -0.01 0.55 16 12 C -0.14 -0.80 7.08 -24.59 -0.17 -0.98 16 13 C -0.11 -1.00 6.28 -24.90 -0.16 -1.16 16 14 C 0.14 1.59 3.12 -66.96 -0.21 1.38 16 15 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 16 C 0.05 0.62 5.08 -3.83 -0.02 0.60 16 17 N -0.66 -10.62 5.91 -115.06 -0.68 -11.30 16 18 C 0.05 0.87 6.16 -4.98 -0.03 0.84 16 19 C 0.45 10.51 7.82 -10.99 -0.09 10.42 16 20 O -0.56 -15.34 15.78 5.55 0.09 -15.25 16 21 N -0.59 -14.44 5.09 -10.96 -0.06 -14.49 16 22 C -0.30 -8.74 10.16 -14.93 -0.15 -8.89 16 23 H 0.12 3.90 7.39 -52.48 -0.39 3.52 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -26.10 13.96 55.50 0.77 -25.33 16 26 Si 0.88 19.76 27.74 -169.99 -4.71 15.05 16 27 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 29 H -0.27 -5.57 6.52 56.52 0.37 -5.21 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.39 5.28 -51.93 -0.27 0.12 16 35 H 0.04 0.27 8.08 -51.93 -0.42 -0.15 16 36 H 0.06 0.45 6.40 -51.93 -0.33 0.11 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.36 7.24 -51.93 -0.38 -0.02 16 39 H 0.08 0.33 7.22 -51.93 -0.38 -0.04 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.79 7.77 -51.93 -0.40 0.39 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.70 6.55 -51.93 -0.34 0.36 16 45 H 0.07 0.87 8.00 -51.93 -0.42 0.45 16 46 H 0.35 5.99 8.48 -39.29 -0.33 5.66 16 47 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.09 1.33 8.14 -51.92 -0.42 0.90 16 49 H 0.37 7.98 5.76 -40.82 -0.24 7.75 16 50 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 402.60 15.07 6.07 6.07 Total: -1.00 -36.51 402.60 -6.96 -43.47 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -8.09 Total: 10.95 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 1.32 Total: 13.89 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.46 Total: -57.57 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -1.08 Total: -31.85 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.71 Total: 15.05 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -36.51 -6.96 -43.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267964040.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.259 kcal (2) G-P(sol) polarization free energy of solvation -36.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds