Wall clock time and date at job start Wed Apr 1 2020 02:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00294 * 2 1 4 4 C 1.52999 * 109.47224 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.46889 * 65.00060 * 4 3 2 6 6 C 1.42905 * 113.99778 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46972 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00041 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.47423 * 125.64790 * 359.68719 * 9 7 6 11 11 C 1.55125 * 104.72302 * 155.81984 * 10 9 7 12 12 H 1.09001 * 110.93732 * 155.28906 * 11 10 9 13 13 C 1.53004 * 111.19498 * 279.19281 * 11 10 9 14 14 C 1.55157 * 101.48300 * 37.29842 * 11 10 9 15 15 H 1.09003 * 110.72343 * 82.69995 * 14 11 10 16 16 N 1.46905 * 110.86950 * 205.89590 * 14 11 10 17 17 C 1.46903 * 111.00032 * 200.06060 * 16 14 11 18 18 C 1.50697 * 109.47260 * 180.02562 * 17 16 14 19 19 O 1.21293 * 119.99895 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00419 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00612 * 180.02562 * 20 18 17 22 22 H 1.08007 * 119.99943 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00662 * 179.97438 * 21 20 18 24 24 N 1.31420 * 119.99558 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00548 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46946 * 59.99727 * 25 23 21 27 27 H 1.48493 * 109.47080 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46754 * 299.99747 * 25 23 21 29 29 C 1.47016 * 125.64721 * 180.02562 * 9 7 6 30 30 H 1.08994 * 109.47642 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47247 * 300.00013 * 1 2 3 32 32 H 1.09005 * 109.46915 * 60.00061 * 1 2 3 33 33 H 1.09004 * 109.46812 * 59.99840 * 3 2 1 34 34 H 1.08993 * 109.46802 * 300.00210 * 3 2 1 35 35 H 1.08997 * 109.47286 * 305.00043 * 4 3 2 36 36 H 1.08997 * 109.46848 * 185.00141 * 4 3 2 37 37 H 1.09000 * 109.47187 * 300.00233 * 6 5 4 38 38 H 1.09001 * 109.46558 * 60.00281 * 6 5 4 39 39 H 1.09000 * 110.36737 * 274.75059 * 10 9 7 40 40 H 1.09003 * 110.36552 * 37.07227 * 10 9 7 41 41 H 1.08992 * 109.47214 * 172.18420 * 13 11 10 42 42 H 1.09000 * 109.46892 * 292.19044 * 13 11 10 43 43 H 1.09007 * 109.46434 * 52.18706 * 13 11 10 44 44 H 1.00896 * 111.00192 * 324.01875 * 16 14 11 45 45 H 1.08997 * 109.47413 * 300.00710 * 17 16 14 46 46 H 1.09002 * 109.46883 * 60.00211 * 17 16 14 47 47 H 0.97007 * 119.99976 * 359.97438 * 20 18 17 48 48 H 0.96996 * 119.99551 * 180.02562 * 24 23 21 49 49 H 1.09004 * 109.88620 * 300.43089 * 29 9 7 50 50 H 1.08998 * 109.88920 * 61.59816 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4196 -1.3220 7 6 5.7215 -0.2242 -2.6417 8 8 4.8375 -0.5171 -3.4186 9 7 7.0074 -0.4745 -2.9585 10 6 8.1760 -0.1657 -2.1145 11 6 9.2742 -1.1555 -2.5842 12 1 10.2687 -0.7647 -2.3690 13 6 9.0819 -2.5357 -1.9523 14 6 9.0141 -1.2027 -4.1131 15 1 9.4907 -0.3587 -4.6117 16 7 9.4814 -2.4728 -4.6845 17 6 9.6844 -2.3546 -6.1347 18 6 10.1620 -3.6740 -6.6842 19 8 10.3175 -4.6199 -5.9411 20 7 10.4164 -3.8030 -8.0014 21 6 10.8504 -5.0035 -8.5015 22 1 10.9888 -5.8458 -7.8398 23 6 11.1121 -5.1366 -9.8596 24 7 10.9432 -4.1118 -10.6649 25 14 11.7041 -6.7721 -10.5409 26 1 10.6876 -7.8195 -10.2671 27 1 11.9088 -6.6527 -12.0068 28 1 12.9861 -7.1444 -9.8903 29 6 7.4774 -1.0944 -4.2060 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 3.8508 0.5685 0.8427 36 1 3.9784 2.1765 0.0902 37 1 5.8632 1.3958 -1.2601 38 1 5.7361 -0.2123 -0.5074 39 1 8.4970 0.8638 -2.2731 40 1 7.9397 -0.3327 -1.0636 41 1 9.7784 -3.2421 -2.4037 42 1 9.2703 -2.4739 -0.8805 43 1 8.0597 -2.8739 -2.1227 44 1 10.3232 -2.7876 -4.2260 45 1 8.7435 -2.0816 -6.6123 46 1 10.4303 -1.5856 -6.3356 47 1 10.2917 -3.0466 -8.5958 48 1 11.1256 -4.2049 -11.6130 49 1 7.0418 -2.0879 -4.3134 50 1 7.2002 -0.4720 -5.0567 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274180474.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:18 Heat of formation + Delta-G solvation = -147.692981 kcal Electronic energy + Delta-G solvation = -29721.489271 eV Core-core repulsion = 25363.552080 eV Total energy + Delta-G solvation = -4357.937191 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.43879 -38.96487 -38.36521 -37.87435 -37.09354 -34.77331 -33.79667 -32.18943 -31.19089 -31.13686 -29.50391 -27.66518 -26.81270 -26.56447 -25.92412 -24.08953 -22.96664 -22.43927 -19.98974 -19.64362 -19.16432 -17.88620 -17.66648 -17.29564 -17.06866 -16.73092 -16.00533 -15.93240 -15.76575 -15.47299 -15.16144 -15.04743 -14.72711 -14.45323 -14.11756 -13.77862 -13.73629 -13.55792 -13.30231 -12.99312 -12.83028 -12.57671 -12.47250 -12.29837 -12.20535 -11.96193 -11.77761 -11.74706 -11.52072 -11.47260 -11.16551 -11.03551 -10.94904 -10.72773 -10.43088 -10.20129 -10.11272 -10.04530 -9.86985 -9.48937 -8.76649 -8.48643 -8.13929 -7.95291 -6.40472 -3.81384 2.43110 2.49013 3.21402 3.27174 3.31512 3.37966 3.50037 3.91153 4.06406 4.15088 4.22222 4.29542 4.52216 4.63229 4.71938 4.73552 4.77479 4.86554 4.90812 4.95233 5.02533 5.06175 5.08268 5.08844 5.18820 5.22211 5.28495 5.29499 5.36376 5.37551 5.60499 5.69726 5.75346 5.83551 5.93320 6.00318 6.05309 6.12692 6.27514 6.37672 6.64722 6.80748 7.15517 7.32380 7.56198 7.58579 8.05527 8.06905 8.61985 9.18771 9.55130 10.06337 10.77107 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.001696 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.099209 B =16500.999753 C =17289.369076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.063 3.937 4 C 0.062 3.938 5 O -0.355 6.355 6 C 0.051 3.949 7 C 0.528 3.472 8 O -0.514 6.514 9 N -0.615 5.615 10 C 0.102 3.898 11 C -0.104 4.104 12 H 0.091 0.909 13 C -0.136 4.136 14 C 0.078 3.922 15 H 0.060 0.940 16 N -0.654 5.654 17 C 0.048 3.952 18 C 0.441 3.559 19 O -0.583 6.583 20 N -0.563 5.563 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.117 3.883 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.355 0.645 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.086 0.914 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.494 17.187 23.354 30.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.273 6.273 6 C -0.029 4.029 7 C 0.315 3.685 8 O -0.389 6.389 9 N -0.353 5.353 10 C -0.022 4.022 11 C -0.124 4.124 12 H 0.109 0.891 13 C -0.194 4.194 14 C -0.033 4.033 15 H 0.078 0.922 16 N -0.288 5.288 17 C -0.084 4.084 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.005 4.005 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.177 0.823 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.104 0.896 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.586 15.917 23.014 30.286 hybrid contribution 1.058 0.676 -0.669 1.423 sum -10.528 16.593 22.345 29.757 Atomic orbital electron populations 1.22753 0.80935 1.03030 0.99809 1.87986 1.19716 1.27050 1.95352 1.22536 0.92069 0.85785 1.00979 1.22600 0.93833 0.97530 0.87539 1.88096 1.19392 1.82040 1.37758 1.22147 0.84140 1.00584 0.96072 1.19807 0.81083 0.79504 0.88131 1.90768 1.45892 1.51081 1.51112 1.48312 1.04952 1.61716 1.20274 1.22494 0.85671 0.98761 0.95244 1.22550 0.98424 0.96865 0.94536 0.89087 1.21621 1.03551 0.95176 0.99025 1.22538 0.94437 0.92176 0.94188 0.92181 1.60065 1.39569 1.26315 1.02896 1.21763 1.00929 0.96779 0.88969 1.19756 0.84716 0.89573 0.83340 1.90523 1.57515 1.40764 1.57971 1.41851 1.58375 1.13458 1.06222 1.19657 1.40911 0.90233 0.92207 0.87956 1.25265 0.97642 0.99047 0.95941 1.69608 1.49037 1.30512 1.05101 0.85911 0.79329 0.81517 0.77416 1.19876 1.20990 1.19934 1.22008 0.93830 0.99306 0.85390 0.89465 0.94246 0.93907 0.91676 0.92186 0.92124 0.91533 0.90457 0.90243 0.91015 0.90397 0.90859 0.93050 0.92015 0.82322 0.89514 0.93677 0.77451 0.91821 0.89582 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.38 -4.03 10.67 -40.08 -0.43 -4.45 16 3 C 0.06 0.48 6.32 37.16 0.23 0.71 16 4 C 0.06 0.46 6.32 37.16 0.23 0.69 16 5 O -0.35 -4.20 9.84 -59.73 -0.59 -4.79 16 6 C 0.05 0.47 5.42 36.01 0.20 0.66 16 7 C 0.53 7.04 7.93 -10.99 -0.09 6.96 16 8 O -0.51 -9.53 16.83 -14.35 -0.24 -9.77 16 9 N -0.62 -6.99 3.31 -170.38 -0.56 -7.55 16 10 C 0.10 0.76 6.17 -2.41 -0.01 0.74 16 11 C -0.10 -0.90 3.47 -88.35 -0.31 -1.21 16 12 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 13 C -0.14 -1.37 8.77 37.16 0.33 -1.04 16 14 C 0.08 0.89 3.02 -65.87 -0.20 0.69 16 15 H 0.06 0.63 7.89 -51.93 -0.41 0.22 16 16 N -0.65 -9.86 5.13 -106.05 -0.54 -10.40 16 17 C 0.05 0.82 6.02 -4.98 -0.03 0.79 16 18 C 0.44 10.29 7.82 -10.99 -0.09 10.21 16 19 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 20 N -0.56 -14.26 5.29 -10.97 -0.06 -14.31 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 23 C 0.02 0.61 5.50 -17.46 -0.10 0.52 16 24 N -0.90 -24.63 13.05 55.50 0.72 -23.90 16 25 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 C 0.12 1.54 6.23 -3.07 -0.02 1.52 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.56 7.85 -51.93 -0.41 0.15 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.43 7.40 -51.93 -0.38 0.05 16 41 H 0.07 0.85 6.70 -51.93 -0.35 0.51 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.75 7.91 -51.92 -0.41 0.34 16 44 H 0.35 5.39 7.01 -39.29 -0.28 5.12 16 45 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 46 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 47 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.09 1.37 8.03 -51.93 -0.42 0.96 16 50 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 414.50 15.07 6.25 6.25 Total: -1.00 -36.78 414.50 -7.67 -44.45 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -8.40 Total: 9.87 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 1.12 Total: 14.02 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.44 Total: -56.17 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -1.17 Total: -34.57 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -36.78 -7.67 -44.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274180474.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.246 kcal (2) G-P(sol) polarization free energy of solvation -36.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds