Wall clock time and date at job start Wed Apr 1 2020 02:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 114.00294 * 2 1 4 4 C 1.52999 * 109.47224 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.46889 * 65.00060 * 4 3 2 6 6 C 1.42905 * 113.99778 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46972 * 180.02562 * 6 5 4 8 8 O 1.21282 * 120.00041 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.47423 * 125.64790 * 359.68719 * 9 7 6 11 11 C 1.55125 * 104.72302 * 155.81984 * 10 9 7 12 12 H 1.09001 * 110.93732 * 155.28906 * 11 10 9 13 13 C 1.53004 * 111.19498 * 279.19281 * 11 10 9 14 14 C 1.55157 * 101.48300 * 37.29842 * 11 10 9 15 15 H 1.09003 * 110.72343 * 82.69995 * 14 11 10 16 16 N 1.46905 * 110.86950 * 205.89590 * 14 11 10 17 17 C 1.46903 * 111.00032 * 200.06060 * 16 14 11 18 18 C 1.50697 * 109.47260 * 180.02562 * 17 16 14 19 19 O 1.21293 * 119.99895 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00419 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00612 * 180.02562 * 20 18 17 22 22 H 1.08007 * 119.99943 * 359.97438 * 21 20 18 23 23 C 1.38951 * 120.00662 * 179.97438 * 21 20 18 24 24 N 1.31420 * 119.99558 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00548 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46946 * 59.99727 * 25 23 21 27 27 H 1.48493 * 109.47080 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.46754 * 299.99747 * 25 23 21 29 29 C 1.47016 * 125.64721 * 180.02562 * 9 7 6 30 30 H 1.08994 * 109.47642 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47247 * 300.00013 * 1 2 3 32 32 H 1.09005 * 109.46915 * 60.00061 * 1 2 3 33 33 H 1.09004 * 109.46812 * 59.99840 * 3 2 1 34 34 H 1.08993 * 109.46802 * 300.00210 * 3 2 1 35 35 H 1.08997 * 109.47286 * 305.00043 * 4 3 2 36 36 H 1.08997 * 109.46848 * 185.00141 * 4 3 2 37 37 H 1.09000 * 109.47187 * 300.00233 * 6 5 4 38 38 H 1.09001 * 109.46558 * 60.00281 * 6 5 4 39 39 H 1.09000 * 110.36737 * 274.75059 * 10 9 7 40 40 H 1.09003 * 110.36552 * 37.07227 * 10 9 7 41 41 H 1.08992 * 109.47214 * 172.18420 * 13 11 10 42 42 H 1.09000 * 109.46892 * 292.19044 * 13 11 10 43 43 H 1.09007 * 109.46434 * 52.18706 * 13 11 10 44 44 H 1.00896 * 111.00192 * 324.01875 * 16 14 11 45 45 H 1.08997 * 109.47413 * 300.00710 * 17 16 14 46 46 H 1.09002 * 109.46883 * 60.00211 * 17 16 14 47 47 H 0.97007 * 119.99976 * 359.97438 * 20 18 17 48 48 H 0.96996 * 119.99551 * 180.02562 * 24 23 21 49 49 H 1.09004 * 109.88620 * 300.43089 * 29 9 7 50 50 H 1.08998 * 109.88920 * 61.59816 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3822 0.4196 -1.3220 7 6 5.7215 -0.2242 -2.6417 8 8 4.8375 -0.5171 -3.4186 9 7 7.0074 -0.4745 -2.9585 10 6 8.1760 -0.1657 -2.1145 11 6 9.2742 -1.1555 -2.5842 12 1 10.2687 -0.7647 -2.3690 13 6 9.0819 -2.5357 -1.9523 14 6 9.0141 -1.2027 -4.1131 15 1 9.4907 -0.3587 -4.6117 16 7 9.4814 -2.4728 -4.6845 17 6 9.6844 -2.3546 -6.1347 18 6 10.1620 -3.6740 -6.6842 19 8 10.3175 -4.6199 -5.9411 20 7 10.4164 -3.8030 -8.0014 21 6 10.8504 -5.0035 -8.5015 22 1 10.9888 -5.8458 -7.8398 23 6 11.1121 -5.1366 -9.8596 24 7 10.9432 -4.1118 -10.6649 25 14 11.7041 -6.7721 -10.5409 26 1 10.6876 -7.8195 -10.2671 27 1 11.9088 -6.6527 -12.0068 28 1 12.9861 -7.1444 -9.8903 29 6 7.4774 -1.0944 -4.2060 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8899 35 1 3.8508 0.5685 0.8427 36 1 3.9784 2.1765 0.0902 37 1 5.8632 1.3958 -1.2601 38 1 5.7361 -0.2123 -0.5074 39 1 8.4970 0.8638 -2.2731 40 1 7.9397 -0.3327 -1.0636 41 1 9.7784 -3.2421 -2.4037 42 1 9.2703 -2.4739 -0.8805 43 1 8.0597 -2.8739 -2.1227 44 1 10.3232 -2.7876 -4.2260 45 1 8.7435 -2.0816 -6.6123 46 1 10.4303 -1.5856 -6.3356 47 1 10.2917 -3.0466 -8.5958 48 1 11.1256 -4.2049 -11.6130 49 1 7.0418 -2.0879 -4.3134 50 1 7.2002 -0.4720 -5.0567 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274180474.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:13:18 Heat of formation + Delta-G solvation = -177.157084 kcal Electronic energy + Delta-G solvation = -29722.766931 eV Core-core repulsion = 25363.552080 eV Total energy + Delta-G solvation = -4359.214850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.36267 -40.19434 -39.53415 -38.91633 -37.88416 -36.21954 -35.57515 -33.35248 -33.04359 -31.75172 -30.43997 -28.75911 -27.57761 -27.45800 -27.00757 -25.75766 -23.50930 -23.38828 -21.19583 -20.77062 -20.45980 -19.89008 -18.49318 -17.98141 -17.91659 -17.62124 -17.37479 -16.80164 -16.73917 -16.61322 -16.23672 -16.14961 -15.92083 -15.75055 -15.38995 -15.17822 -14.94776 -14.40600 -14.40166 -14.03158 -13.71511 -13.66236 -13.48840 -13.29939 -13.18343 -13.13065 -13.01781 -12.93973 -12.83663 -12.43627 -12.35808 -12.13557 -12.05032 -12.01171 -11.79553 -11.56247 -11.50312 -10.91409 -10.71799 -10.62475 -10.34746 -10.01989 -9.70710 -9.38157 -8.46854 -5.95770 1.39452 1.41372 1.52314 1.52950 1.62612 2.05041 2.28851 2.80574 2.87935 2.96932 3.20501 3.33388 3.49439 3.52759 3.79746 4.07301 4.07520 4.18656 4.21506 4.24871 4.28455 4.29498 4.31197 4.43615 4.46902 4.48473 4.56324 4.57873 4.58380 4.60514 4.66976 4.77051 4.78367 4.84765 4.86484 4.95860 5.06859 5.17322 5.28633 5.40310 5.54677 5.88122 6.05451 6.09371 6.26531 6.39346 6.49489 6.59506 7.10673 7.12053 7.55843 8.10933 8.70244 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.018428 B = 0.001696 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.099209 B =16500.999753 C =17289.369076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.054 3.946 4 C 0.056 3.944 5 O -0.400 6.400 6 C 0.057 3.943 7 C 0.516 3.484 8 O -0.584 6.584 9 N -0.611 5.611 10 C 0.101 3.899 11 C -0.096 4.096 12 H 0.125 0.875 13 C -0.134 4.134 14 C 0.081 3.919 15 H 0.084 0.916 16 N -0.670 5.670 17 C 0.064 3.936 18 C 0.438 3.562 19 O -0.622 6.622 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.275 1.275 27 H -0.270 1.270 28 H -0.269 1.269 29 C 0.117 3.883 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.097 0.903 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.031 0.969 44 H 0.355 0.645 45 H 0.093 0.907 46 H 0.075 0.925 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.044 0.956 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.219 19.554 25.505 33.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.022 4.022 4 C -0.019 4.019 5 O -0.319 6.319 6 C -0.022 4.022 7 C 0.306 3.694 8 O -0.464 6.464 9 N -0.346 5.346 10 C -0.021 4.021 11 C -0.115 4.115 12 H 0.143 0.857 13 C -0.191 4.191 14 C -0.029 4.029 15 H 0.102 0.898 16 N -0.305 5.305 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.509 6.509 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.097 0.903 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.200 1.200 27 H -0.195 1.195 28 H -0.194 1.194 29 C -0.007 4.007 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.136 0.864 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.070 0.930 42 H 0.097 0.903 43 H 0.050 0.950 44 H 0.177 0.823 45 H 0.111 0.889 46 H 0.093 0.907 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.063 0.937 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.279 18.329 25.200 32.812 hybrid contribution 0.627 -0.055 -1.274 1.421 sum -9.651 18.273 23.926 31.615 Atomic orbital electron populations 1.22884 0.79749 1.03484 1.00870 1.87930 1.21333 1.29089 1.95603 1.22798 0.92480 0.84877 1.02027 1.22885 0.93681 0.99193 0.86174 1.88050 1.20869 1.82967 1.40030 1.22268 0.83647 1.02608 0.93689 1.20786 0.80794 0.78720 0.89147 1.90728 1.47984 1.54186 1.53497 1.48401 1.05740 1.60448 1.20032 1.22850 0.83237 0.99967 0.96023 1.22611 1.00724 0.96434 0.91762 0.85747 1.21579 1.01022 0.95740 1.00779 1.22597 0.92737 0.91003 0.96557 0.89849 1.59957 1.39720 1.29123 1.01707 1.21586 1.01654 0.93383 0.90198 1.20855 0.82802 0.91376 0.82430 1.90490 1.58693 1.42923 1.58748 1.41930 1.59045 1.12930 1.07141 1.19646 1.43164 0.90919 0.92817 0.90273 1.26048 0.97139 1.02439 0.95633 1.69672 1.48992 1.31944 1.05474 0.84983 0.78733 0.77294 0.77284 1.19997 1.19478 1.19435 1.21858 0.95176 0.97147 0.86522 0.89456 0.92013 0.93951 0.88517 0.93088 0.91232 0.88129 0.86421 0.87650 0.87677 0.87464 0.92994 0.90345 0.94989 0.82311 0.88864 0.90689 0.77016 0.91311 0.93698 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.42 -8.80 10.67 -144.34 -1.54 -10.34 16 3 C 0.05 0.76 6.32 71.98 0.45 1.21 16 4 C 0.06 0.71 6.32 71.98 0.45 1.17 16 5 O -0.40 -9.08 9.84 -125.55 -1.24 -10.31 16 6 C 0.06 0.91 5.42 71.24 0.39 1.30 16 7 C 0.52 13.61 7.93 87.66 0.69 14.31 16 8 O -0.58 -22.91 16.83 16.00 0.27 -22.64 16 9 N -0.61 -13.07 3.31 -811.36 -2.69 -15.76 16 10 C 0.10 1.07 6.17 86.93 0.54 1.60 16 11 C -0.10 -1.34 3.47 -9.32 -0.03 -1.38 16 12 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 13 C -0.13 -2.48 8.77 71.98 0.63 -1.84 16 14 C 0.08 1.72 3.02 46.10 0.14 1.86 16 15 H 0.08 1.45 7.89 -2.39 -0.02 1.43 16 16 N -0.67 -20.01 5.13 -489.43 -2.51 -22.52 16 17 C 0.06 2.17 6.02 85.56 0.52 2.69 16 18 C 0.44 20.92 7.82 87.66 0.69 21.61 16 19 O -0.62 -34.52 15.78 -3.07 -0.05 -34.57 16 20 N -0.57 -29.79 5.29 -306.99 -1.62 -31.41 16 21 C -0.34 -19.34 9.68 84.04 0.81 -18.53 16 22 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 24 N -0.92 -50.28 13.05 21.66 0.28 -49.99 16 25 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 29 C 0.12 3.10 6.23 86.73 0.54 3.64 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 33 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.11 1.11 7.85 -2.39 -0.02 1.09 16 39 H 0.11 0.55 8.14 -2.39 -0.02 0.54 16 40 H 0.11 0.59 7.40 -2.39 -0.02 0.57 16 41 H 0.05 1.19 6.70 -2.39 -0.02 1.17 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.03 0.77 7.91 -2.38 -0.02 0.75 16 44 H 0.36 10.63 7.01 -89.70 -0.63 10.01 16 45 H 0.09 3.06 8.13 -2.39 -0.02 3.04 16 46 H 0.08 2.12 8.08 -2.39 -0.02 2.10 16 47 H 0.40 19.58 7.90 -92.70 -0.73 18.85 16 48 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 49 H 0.04 1.55 8.03 -2.39 -0.02 1.53 16 50 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -87.00 414.50 0.06 -86.94 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: -0.41 Total: 36.03 kcal Atomic # 6 Polarization: 21.48 SS G_CDS: 7.54 Total: 29.01 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -6.54 Total: -119.68 kcal Atomic # 8 Polarization: -75.30 SS G_CDS: -2.55 Total: -77.86 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -87.00 0.06 -86.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274180474.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.220 kcal (2) G-P(sol) polarization free energy of solvation -86.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds